Ggra1171.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1171.t1
Unique NameGgra1171.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length441
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:42382..43704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4432.XP_010267507.1
PFAMsUBA_4,UBX
Max annot lvl35493|Streptophyta
KEGG koko:K18726
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
Evalue3.15e-34
EggNOG OGsKOG1363@1|root,KOG1363@2759|Eukaryota,37NUQ@33090|Viridiplantae,3GC80@35493|Streptophyta
DescriptionFas-associated factor
COG categoryT
BRITEko00000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1171Ggra1171Gracilaria gracilis GNS1m malegenetig00000237_pilon 42382..43704 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1171.t1.stop1Ggra1171.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000237_pilon 42382..42384 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1171.t1.CDS1Ggra1171.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000237_pilon 42382..43704 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1171.t1.exon1Ggra1171.t1.exon1Gracilaria gracilis GNS1m maleexontig00000237_pilon 42382..43704 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1171.t1.start1Ggra1171.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000237_pilon 43702..43704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1171.t1Ggra1171.t1Gracilaria gracilis GNS1m malepolypeptidetig00000237_pilon 42382..43704 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1171.t1 ID=Ggra1171.t1|Name=Ggra1171.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp
MVPSEPSGEQRAQAIATLRAATSLESDEHAVRLLRAHDWDLDRAASAFFD
GPETSSPDPLPAPVSDSRAVAVRSASRTAAVVTPRASTPRWLLALLSPFR
FVWSFLARLTTSILNALGGPARLIEAAPGETPTHRFLNFFNDKYGTRHPS
FMTTTYLQALHTAHAQLKFLLVYIHSESHRLTPAFVGHVISNQRFINTVD
ETMLTWAGSVTQRDAAAVQSALRAPALPFLAIVAAPSRVSSELTRSNYGT
VLSIRAGSSALVGGADATVAWIARVVERHAPILNAIREERVERESARLLR
EQQDAEYAAALEADRLTERQAAEQREKEEKEKRRVEELEIRRERKREALG
PEPEKGPGIASLVLRLPDGSRVGRRFEKHDALEKVFDWAEVNRVDIEVAC
LVVAYPRKNFRYPEDADITIEKAGLFPSSMLLLEERSTDA*
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spliced messenger RNA

>Ggra1171.t1 ID=Ggra1171.t1|Name=Ggra1171.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000237_pilon:42382..43704- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCCGTCGGAGCCTTCGGGGGAGCAGCGTGCGCAAGCCATTGCAAC
TCTACGAGCCGCCACTTCTTTGGAGTCCGATGAGCATGCTGTCCGACTTC
TTCGTGCTCACGATTGGGACCTTGATCGCGCAGCGTCCGCCTTCTTCGAT
GGGCCCGAAACGTCGTCACCAGATCCATTGCCCGCGCCCGTTTCTGATTC
TCGTGCTGTTGCAGTCCGTTCTGCAAGTCGAACAGCTGCTGTTGTAACTC
CCCGTGCTTCCACACCGCGATGGTTGCTTGCCCTTCTTTCTCCGTTTCGT
TTTGTGTGGTCCTTCCTCGCCAGATTAACCACTTCTATCCTAAATGCGCT
TGGCGGTCCTGCACGCTTAATTGAAGCCGCTCCGGGAGAGACTCCTACGC
ACCGCTTCCTAAACTTTTTCAATGATAAGTATGGCACCCGGCATCCTTCC
TTCATGACAACCACCTATTTGCAAGCTCTCCACACCGCCCATGCGCAGCT
CAAATTCCTTTTGGTCTACATCCACTCCGAATCTCATAGGCTCACGCCAG
CATTTGTGGGCCATGTCATCTCAAATCAGCGTTTCATCAACACCGTTGAT
GAAACCATGCTCACGTGGGCTGGGTCAGTCACTCAGCGGGATGCAGCTGC
TGTGCAGAGCGCCTTGCGTGCCCCTGCTTTACCTTTTCTGGCCATTGTCG
CAGCCCCATCTCGTGTTTCGTCCGAGTTGACGCGGTCTAACTATGGGACC
GTTCTTTCAATCCGTGCCGGGTCTTCTGCACTAGTTGGGGGCGCCGACGC
CACTGTGGCCTGGATCGCACGAGTTGTAGAGCGACACGCTCCGATACTGA
ATGCTATTAGAGAGGAGCGCGTAGAAAGAGAGAGTGCACGCTTACTTCGC
GAACAGCAGGACGCTGAGTATGCGGCTGCATTGGAGGCTGATCGATTGAC
GGAGCGACAAGCTGCTGAACAGCGCGAAAAGGAAGAGAAGGAAAAGCGAC
GAGTGGAGGAATTGGAAATAAGACGTGAACGGAAACGAGAGGCTTTGGGT
CCAGAACCAGAAAAAGGGCCTGGGATTGCGAGCCTTGTGCTGCGGTTACC
GGATGGTAGTCGTGTTGGAAGACGTTTTGAGAAGCATGATGCGTTGGAGA
AAGTGTTCGATTGGGCAGAAGTTAATAGAGTTGATATTGAGGTGGCTTGT
TTAGTTGTGGCTTACCCTCGAAAGAACTTCCGATACCCGGAAGATGCTGA
CATAACAATCGAAAAAGCTGGTCTGTTTCCAAGCAGTATGCTGCTACTGG
AAGAGCGCTCGACAGACGCATAA
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protein sequence of Ggra1171.t1

>Ggra1171.t1 ID=Ggra1171.t1|Name=Ggra1171.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=441bp
MVPSEPSGEQRAQAIATLRAATSLESDEHAVRLLRAHDWDLDRAASAFFD
GPETSSPDPLPAPVSDSRAVAVRSASRTAAVVTPRASTPRWLLALLSPFR
FVWSFLARLTTSILNALGGPARLIEAAPGETPTHRFLNFFNDKYGTRHPS
FMTTTYLQALHTAHAQLKFLLVYIHSESHRLTPAFVGHVISNQRFINTVD
ETMLTWAGSVTQRDAAAVQSALRAPALPFLAIVAAPSRVSSELTRSNYGT
VLSIRAGSSALVGGADATVAWIARVVERHAPILNAIREERVERESARLLR
EQQDAEYAAALEADRLTERQAAEQREKEEKEKRRVEELEIRRERKREALG
PEPEKGPGIASLVLRLPDGSRVGRRFEKHDALEKVFDWAEVNRVDIEVAC
LVVAYPRKNFRYPEDADITIEKAGLFPSSMLLLEERSTDA*
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mRNA from alignment at tig00000237_pilon:42382..43704-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1171.t1 ID=Ggra1171.t1|Name=Ggra1171.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000237_pilon:42382..43704- (Gracilaria gracilis GNS1m male)
ATGGTTCCGTCGGAGCCTTCGGGGGAGCAGCGTGCGCAAGCCATTGCAAC
TCTACGAGCCGCCACTTCTTTGGAGTCCGATGAGCATGCTGTCCGACTTC
TTCGTGCTCACGATTGGGACCTTGATCGCGCAGCGTCCGCCTTCTTCGAT
GGGCCCGAAACGTCGTCACCAGATCCATTGCCCGCGCCCGTTTCTGATTC
TCGTGCTGTTGCAGTCCGTTCTGCAAGTCGAACAGCTGCTGTTGTAACTC
CCCGTGCTTCCACACCGCGATGGTTGCTTGCCCTTCTTTCTCCGTTTCGT
TTTGTGTGGTCCTTCCTCGCCAGATTAACCACTTCTATCCTAAATGCGCT
TGGCGGTCCTGCACGCTTAATTGAAGCCGCTCCGGGAGAGACTCCTACGC
ACCGCTTCCTAAACTTTTTCAATGATAAGTATGGCACCCGGCATCCTTCC
TTCATGACAACCACCTATTTGCAAGCTCTCCACACCGCCCATGCGCAGCT
CAAATTCCTTTTGGTCTACATCCACTCCGAATCTCATAGGCTCACGCCAG
CATTTGTGGGCCATGTCATCTCAAATCAGCGTTTCATCAACACCGTTGAT
GAAACCATGCTCACGTGGGCTGGGTCAGTCACTCAGCGGGATGCAGCTGC
TGTGCAGAGCGCCTTGCGTGCCCCTGCTTTACCTTTTCTGGCCATTGTCG
CAGCCCCATCTCGTGTTTCGTCCGAGTTGACGCGGTCTAACTATGGGACC
GTTCTTTCAATCCGTGCCGGGTCTTCTGCACTAGTTGGGGGCGCCGACGC
CACTGTGGCCTGGATCGCACGAGTTGTAGAGCGACACGCTCCGATACTGA
ATGCTATTAGAGAGGAGCGCGTAGAAAGAGAGAGTGCACGCTTACTTCGC
GAACAGCAGGACGCTGAGTATGCGGCTGCATTGGAGGCTGATCGATTGAC
GGAGCGACAAGCTGCTGAACAGCGCGAAAAGGAAGAGAAGGAAAAGCGAC
GAGTGGAGGAATTGGAAATAAGACGTGAACGGAAACGAGAGGCTTTGGGT
CCAGAACCAGAAAAAGGGCCTGGGATTGCGAGCCTTGTGCTGCGGTTACC
GGATGGTAGTCGTGTTGGAAGACGTTTTGAGAAGCATGATGCGTTGGAGA
AAGTGTTCGATTGGGCAGAAGTTAATAGAGTTGATATTGAGGTGGCTTGT
TTAGTTGTGGCTTACCCTCGAAAGAACTTCCGATACCCGGAAGATGCTGA
CATAACAATCGAAAAAGCTGGTCTGTTTCCAAGCAGTATGCTGCTACTGG
AAGAGCGCTCGACAGACGCATAA
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Coding sequence (CDS) from alignment at tig00000237_pilon:42382..43704-

>Ggra1171.t1 ID=Ggra1171.t1|Name=Ggra1171.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1323bp|location=Sequence derived from alignment at tig00000237_pilon:42382..43704- (Gracilaria gracilis GNS1m male)
ATGGTTCCGTCGGAGCCTTCGGGGGAGCAGCGTGCGCAAGCCATTGCAAC
TCTACGAGCCGCCACTTCTTTGGAGTCCGATGAGCATGCTGTCCGACTTC
TTCGTGCTCACGATTGGGACCTTGATCGCGCAGCGTCCGCCTTCTTCGAT
GGGCCCGAAACGTCGTCACCAGATCCATTGCCCGCGCCCGTTTCTGATTC
TCGTGCTGTTGCAGTCCGTTCTGCAAGTCGAACAGCTGCTGTTGTAACTC
CCCGTGCTTCCACACCGCGATGGTTGCTTGCCCTTCTTTCTCCGTTTCGT
TTTGTGTGGTCCTTCCTCGCCAGATTAACCACTTCTATCCTAAATGCGCT
TGGCGGTCCTGCACGCTTAATTGAAGCCGCTCCGGGAGAGACTCCTACGC
ACCGCTTCCTAAACTTTTTCAATGATAAGTATGGCACCCGGCATCCTTCC
TTCATGACAACCACCTATTTGCAAGCTCTCCACACCGCCCATGCGCAGCT
CAAATTCCTTTTGGTCTACATCCACTCCGAATCTCATAGGCTCACGCCAG
CATTTGTGGGCCATGTCATCTCAAATCAGCGTTTCATCAACACCGTTGAT
GAAACCATGCTCACGTGGGCTGGGTCAGTCACTCAGCGGGATGCAGCTGC
TGTGCAGAGCGCCTTGCGTGCCCCTGCTTTACCTTTTCTGGCCATTGTCG
CAGCCCCATCTCGTGTTTCGTCCGAGTTGACGCGGTCTAACTATGGGACC
GTTCTTTCAATCCGTGCCGGGTCTTCTGCACTAGTTGGGGGCGCCGACGC
CACTGTGGCCTGGATCGCACGAGTTGTAGAGCGACACGCTCCGATACTGA
ATGCTATTAGAGAGGAGCGCGTAGAAAGAGAGAGTGCACGCTTACTTCGC
GAACAGCAGGACGCTGAGTATGCGGCTGCATTGGAGGCTGATCGATTGAC
GGAGCGACAAGCTGCTGAACAGCGCGAAAAGGAAGAGAAGGAAAAGCGAC
GAGTGGAGGAATTGGAAATAAGACGTGAACGGAAACGAGAGGCTTTGGGT
CCAGAACCAGAAAAAGGGCCTGGGATTGCGAGCCTTGTGCTGCGGTTACC
GGATGGTAGTCGTGTTGGAAGACGTTTTGAGAAGCATGATGCGTTGGAGA
AAGTGTTCGATTGGGCAGAAGTTAATAGAGTTGATATTGAGGTGGCTTGT
TTAGTTGTGGCTTACCCTCGAAAGAACTTCCGATACCCGGAAGATGCTGA
CATAACAATCGAAAAAGCTGGTCTGTTTCCAAGCAGTATGCTGCTACTGG
AAGAGCGCTCGACAGACGCATAA
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