Ggra1170.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1170.t1
Unique NameGgra1170.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:41139..41768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1170Ggra1170Gracilaria gracilis GNS1m malegenetig00000237_pilon 41139..41768 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1170.t1.start1Ggra1170.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000237_pilon 41139..41141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1170.t1.CDS1Ggra1170.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000237_pilon 41139..41768 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1170.t1.exon1Ggra1170.t1.exon1Gracilaria gracilis GNS1m maleexontig00000237_pilon 41139..41768 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1170.t1.stop1Ggra1170.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000237_pilon 41766..41768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1170.t1Ggra1170.t1Gracilaria gracilis GNS1m malepolypeptidetig00000237_pilon 41139..41768 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1170.t1 ID=Ggra1170.t1|Name=Ggra1170.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=210bp
MENVAPQPLRPASRPRKPLANPSRLEGKLALHDSNRNGATQGRRRALGDI
TNRAGEQSNIFASQNLNKPSNTASKLDGKTTINEKAILNTSRTFQIPTDQ
FGQVLDPEIIPAPVPDAPYAPVLFDDDELESARRRLEEQAALDDDDRYDF
RGMPYVRTELKFQEKVEMPYDPVEMMNETDGDLLSVTNLDLFNPDQLIPK
TEFSTIELA*
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spliced messenger RNA

>Ggra1170.t1 ID=Ggra1170.t1|Name=Ggra1170.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00000237_pilon:41139..41768+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAACGTGGCACCACAACCGCTGCGCCCTGCTTCACGACCAAGAAA
GCCCTTGGCGAACCCATCGCGACTCGAGGGAAAGCTAGCACTCCATGATT
CTAATCGCAATGGTGCAACCCAAGGCAGGCGAAGAGCCTTGGGCGACATC
ACGAACCGAGCTGGTGAACAGAGCAATATCTTTGCTTCGCAGAACCTGAA
CAAACCTTCTAACACAGCTTCTAAGCTGGATGGAAAGACGACAATTAACG
AAAAGGCAATTCTCAACACTTCTCGTACTTTTCAAATTCCAACTGACCAG
TTTGGGCAAGTGCTAGACCCGGAGATTATTCCGGCCCCTGTTCCTGACGC
TCCGTACGCTCCCGTGCTTTTTGACGATGACGAGCTGGAGAGTGCTCGTC
GAAGACTAGAAGAGCAAGCGGCGCTGGATGATGATGATAGGTATGACTTC
AGGGGGATGCCTTACGTCAGGACGGAGCTTAAGTTTCAAGAGAAAGTTGA
AATGCCGTATGACCCAGTTGAAATGATGAATGAAACGGACGGAGATTTGC
TGAGCGTTACTAATCTGGACTTGTTCAATCCCGACCAACTCATTCCGAAG
ACTGAGTTCTCCACCATCGAACTTGCATGA
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protein sequence of Ggra1170.t1

>Ggra1170.t1 ID=Ggra1170.t1|Name=Ggra1170.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=210bp
MENVAPQPLRPASRPRKPLANPSRLEGKLALHDSNRNGATQGRRRALGDI
TNRAGEQSNIFASQNLNKPSNTASKLDGKTTINEKAILNTSRTFQIPTDQ
FGQVLDPEIIPAPVPDAPYAPVLFDDDELESARRRLEEQAALDDDDRYDF
RGMPYVRTELKFQEKVEMPYDPVEMMNETDGDLLSVTNLDLFNPDQLIPK
TEFSTIELA*
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mRNA from alignment at tig00000237_pilon:41139..41768+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1170.t1 ID=Ggra1170.t1|Name=Ggra1170.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00000237_pilon:41139..41768+ (Gracilaria gracilis GNS1m male)
ATGGAGAACGTGGCACCACAACCGCTGCGCCCTGCTTCACGACCAAGAAA
GCCCTTGGCGAACCCATCGCGACTCGAGGGAAAGCTAGCACTCCATGATT
CTAATCGCAATGGTGCAACCCAAGGCAGGCGAAGAGCCTTGGGCGACATC
ACGAACCGAGCTGGTGAACAGAGCAATATCTTTGCTTCGCAGAACCTGAA
CAAACCTTCTAACACAGCTTCTAAGCTGGATGGAAAGACGACAATTAACG
AAAAGGCAATTCTCAACACTTCTCGTACTTTTCAAATTCCAACTGACCAG
TTTGGGCAAGTGCTAGACCCGGAGATTATTCCGGCCCCTGTTCCTGACGC
TCCGTACGCTCCCGTGCTTTTTGACGATGACGAGCTGGAGAGTGCTCGTC
GAAGACTAGAAGAGCAAGCGGCGCTGGATGATGATGATAGGTATGACTTC
AGGGGGATGCCTTACGTCAGGACGGAGCTTAAGTTTCAAGAGAAAGTTGA
AATGCCGTATGACCCAGTTGAAATGATGAATGAAACGGACGGAGATTTGC
TGAGCGTTACTAATCTGGACTTGTTCAATCCCGACCAACTCATTCCGAAG
ACTGAGTTCTCCACCATCGAACTTGCATGA
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Coding sequence (CDS) from alignment at tig00000237_pilon:41139..41768+

>Ggra1170.t1 ID=Ggra1170.t1|Name=Ggra1170.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=630bp|location=Sequence derived from alignment at tig00000237_pilon:41139..41768+ (Gracilaria gracilis GNS1m male)
ATGGAGAACGTGGCACCACAACCGCTGCGCCCTGCTTCACGACCAAGAAA
GCCCTTGGCGAACCCATCGCGACTCGAGGGAAAGCTAGCACTCCATGATT
CTAATCGCAATGGTGCAACCCAAGGCAGGCGAAGAGCCTTGGGCGACATC
ACGAACCGAGCTGGTGAACAGAGCAATATCTTTGCTTCGCAGAACCTGAA
CAAACCTTCTAACACAGCTTCTAAGCTGGATGGAAAGACGACAATTAACG
AAAAGGCAATTCTCAACACTTCTCGTACTTTTCAAATTCCAACTGACCAG
TTTGGGCAAGTGCTAGACCCGGAGATTATTCCGGCCCCTGTTCCTGACGC
TCCGTACGCTCCCGTGCTTTTTGACGATGACGAGCTGGAGAGTGCTCGTC
GAAGACTAGAAGAGCAAGCGGCGCTGGATGATGATGATAGGTATGACTTC
AGGGGGATGCCTTACGTCAGGACGGAGCTTAAGTTTCAAGAGAAAGTTGA
AATGCCGTATGACCCAGTTGAAATGATGAATGAAACGGACGGAGATTTGC
TGAGCGTTACTAATCTGGACTTGTTCAATCCCGACCAACTCATTCCGAAG
ACTGAGTTCTCCACCATCGAACTTGCATGA
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