Ggra117.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra117.t1
Unique Name	Ggra117.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	479

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000221_pilon	contig	tig00000221_pilon:54172..55608 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	391612.CY0110_09812
Preferred name	amgP
PFAMs	APH
Max annot lvl	2\|Bacteria
Evalue	6.21e-20
EggNOG OGs	COG3173@1\|root,COG3173@2\|Bacteria
Description	very-long-chain-acyl-CoA dehydrogenase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra117	Ggra117	Gracilaria gracilis GNS1m male	gene	tig00000221_pilon 54172..55608 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra117.t1.start1	Ggra117.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000221_pilon 54172..54174 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra117.t1.CDS1	Ggra117.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000221_pilon 54172..55608 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra117.t1.exon1	Ggra117.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000221_pilon 54172..55608 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra117.t1.stop1	Ggra117.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000221_pilon 55606..55608 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra117.t1	Ggra117.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000221_pilon 54172..55608 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000221_pilon:54172..55608+
coding sequence from alignment at tig00000221_pilon:54172..55608+

mRNA sequence

>Ggra117.t1 ID=Ggra117.t1|Name=Ggra117.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=479bp
MSSARFVVVLHPQTGAILARENYQLPSIDYDGDSVTNLRELCQNVQKLLC
ISFGIFLLRAEGEDTRSSGEGSTLDHRMNVLIFEVLSQAVAPTLPGLLWV
PKTEALRISSGSKETYVTQFLHKYQQRGLSNAENRMYSYSIPGWITEASN
WIREESYSHGLCVSEIEQVTRKVEGCIIRTLTRCGSIVYFKAIGATAFVD
ELTVTASIAQVMPMYFDEPLSVDKNRKWMLMRDQGQRFVNGNAMSTKTNR
NTFRAVLTKWGSIQRESIPLISDFQEKGVQVVGGTFLRGLVTEMFSDSDW
TSKCYEEVQRMIGSVPVSFDAEDTLLIDLLSDTCAQLSQYELPMTLVHGD
LNESNILYEKNAFRFIDFASTCVSYPLRDAYWFAHDCGVEESDLDFYFEI
WEHYESIERLHELYGLIGKFESVMSCISLYRWFCSVEYSKELSRMEACKL
FSLMMIHIHLQEQGNDEDVQNLANSANL*

spliced messenger RNA

>Ggra117.t1 ID=Ggra117.t1|Name=Ggra117.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1437bp|location=Sequence derived from alignment at tig00000221_pilon:54172..55608+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCAGCGCGCTTTGTTGTTGTCCTTCATCCTCAAACTGGCGCGAT
TCTTGCTAGGGAGAATTATCAACTACCAAGCATTGACTACGATGGAGACA
GCGTTACAAACTTGAGGGAGCTTTGCCAGAATGTTCAGAAACTGTTATGT
ATAAGTTTCGGAATATTTTTATTGAGAGCAGAGGGTGAAGACACTAGGAG
CTCGGGAGAAGGAAGCACTCTGGATCATCGAATGAATGTGTTGATCTTTG
AAGTTTTGTCGCAAGCAGTTGCCCCAACTCTGCCGGGTTTGCTGTGGGTA
CCTAAAACTGAGGCTTTGCGTATCTCGTCGGGGTCAAAAGAGACCTATGT
AACGCAATTCCTTCACAAATACCAGCAAAGGGGGCTTTCAAACGCGGAGA
ACCGTATGTATTCGTACTCTATTCCGGGCTGGATCACAGAAGCTTCCAAC
TGGATACGGGAAGAATCCTATTCGCATGGCTTATGCGTATCAGAGATTGA
GCAAGTCACTCGGAAGGTTGAAGGATGCATAATCCGCACCTTAACGAGAT
GCGGGTCAATAGTATATTTCAAAGCAATTGGTGCCACGGCATTTGTGGAC
GAGTTGACTGTCACCGCAAGCATTGCACAGGTGATGCCCATGTATTTTGA
CGAACCTCTGAGCGTGGACAAGAATCGGAAGTGGATGCTCATGCGGGATC
AAGGACAAAGGTTTGTTAATGGAAATGCCATGTCAACCAAAACGAATCGC
AATACATTCCGAGCTGTGCTGACAAAGTGGGGGAGCATTCAGCGGGAATC
AATCCCACTGATCAGCGATTTCCAAGAGAAAGGGGTCCAAGTAGTTGGCG
GAACTTTCCTTCGTGGCCTGGTTACTGAAATGTTTTCCGATTCTGATTGG
ACTTCGAAGTGCTACGAAGAAGTGCAGAGAATGATCGGCAGTGTTCCTGT
TTCATTTGACGCAGAAGACACCTTGTTGATAGACCTTCTCTCCGATACTT
GTGCACAGCTTTCCCAATATGAGCTTCCAATGACGCTCGTTCATGGTGAT
TTGAACGAAAGTAATATATTATATGAAAAGAATGCGTTTCGTTTCATCGA
CTTTGCCTCTACCTGTGTATCTTATCCGCTTCGAGACGCGTACTGGTTTG
CTCATGATTGTGGTGTTGAGGAGAGCGACTTGGATTTCTACTTTGAAATT
TGGGAACACTATGAAAGCATTGAAAGACTTCATGAACTGTATGGATTAAT
AGGAAAGTTCGAATCGGTTATGAGTTGCATATCTCTCTATAGGTGGTTTT
GCTCCGTTGAGTATAGCAAGGAGTTATCTCGAATGGAAGCTTGTAAGTTA
TTCAGCTTGATGATGATTCACATACATCTGCAAGAACAGGGAAATGATGA
AGATGTTCAGAATCTGGCCAATAGCGCAAACCTCTAA

protein sequence of Ggra117.t1

>Ggra117.t1 ID=Ggra117.t1|Name=Ggra117.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=479bp
MSSARFVVVLHPQTGAILARENYQLPSIDYDGDSVTNLRELCQNVQKLLC
ISFGIFLLRAEGEDTRSSGEGSTLDHRMNVLIFEVLSQAVAPTLPGLLWV
PKTEALRISSGSKETYVTQFLHKYQQRGLSNAENRMYSYSIPGWITEASN
WIREESYSHGLCVSEIEQVTRKVEGCIIRTLTRCGSIVYFKAIGATAFVD
ELTVTASIAQVMPMYFDEPLSVDKNRKWMLMRDQGQRFVNGNAMSTKTNR
NTFRAVLTKWGSIQRESIPLISDFQEKGVQVVGGTFLRGLVTEMFSDSDW
TSKCYEEVQRMIGSVPVSFDAEDTLLIDLLSDTCAQLSQYELPMTLVHGD
LNESNILYEKNAFRFIDFASTCVSYPLRDAYWFAHDCGVEESDLDFYFEI
WEHYESIERLHELYGLIGKFESVMSCISLYRWFCSVEYSKELSRMEACKL
FSLMMIHIHLQEQGNDEDVQNLANSANL*

mRNA from alignment at tig00000221_pilon:54172..55608+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra117.t1 ID=Ggra117.t1|Name=Ggra117.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1437bp|location=Sequence derived from alignment at tig00000221_pilon:54172..55608+ (Gracilaria gracilis GNS1m male)
ATGTCATCAGCGCGCTTTGTTGTTGTCCTTCATCCTCAAACTGGCGCGAT
TCTTGCTAGGGAGAATTATCAACTACCAAGCATTGACTACGATGGAGACA
GCGTTACAAACTTGAGGGAGCTTTGCCAGAATGTTCAGAAACTGTTATGT
ATAAGTTTCGGAATATTTTTATTGAGAGCAGAGGGTGAAGACACTAGGAG
CTCGGGAGAAGGAAGCACTCTGGATCATCGAATGAATGTGTTGATCTTTG
AAGTTTTGTCGCAAGCAGTTGCCCCAACTCTGCCGGGTTTGCTGTGGGTA
CCTAAAACTGAGGCTTTGCGTATCTCGTCGGGGTCAAAAGAGACCTATGT
AACGCAATTCCTTCACAAATACCAGCAAAGGGGGCTTTCAAACGCGGAGA
ACCGTATGTATTCGTACTCTATTCCGGGCTGGATCACAGAAGCTTCCAAC
TGGATACGGGAAGAATCCTATTCGCATGGCTTATGCGTATCAGAGATTGA
GCAAGTCACTCGGAAGGTTGAAGGATGCATAATCCGCACCTTAACGAGAT
GCGGGTCAATAGTATATTTCAAAGCAATTGGTGCCACGGCATTTGTGGAC
GAGTTGACTGTCACCGCAAGCATTGCACAGGTGATGCCCATGTATTTTGA
CGAACCTCTGAGCGTGGACAAGAATCGGAAGTGGATGCTCATGCGGGATC
AAGGACAAAGGTTTGTTAATGGAAATGCCATGTCAACCAAAACGAATCGC
AATACATTCCGAGCTGTGCTGACAAAGTGGGGGAGCATTCAGCGGGAATC
AATCCCACTGATCAGCGATTTCCAAGAGAAAGGGGTCCAAGTAGTTGGCG
GAACTTTCCTTCGTGGCCTGGTTACTGAAATGTTTTCCGATTCTGATTGG
ACTTCGAAGTGCTACGAAGAAGTGCAGAGAATGATCGGCAGTGTTCCTGT
TTCATTTGACGCAGAAGACACCTTGTTGATAGACCTTCTCTCCGATACTT
GTGCACAGCTTTCCCAATATGAGCTTCCAATGACGCTCGTTCATGGTGAT
TTGAACGAAAGTAATATATTATATGAAAAGAATGCGTTTCGTTTCATCGA
CTTTGCCTCTACCTGTGTATCTTATCCGCTTCGAGACGCGTACTGGTTTG
CTCATGATTGTGGTGTTGAGGAGAGCGACTTGGATTTCTACTTTGAAATT
TGGGAACACTATGAAAGCATTGAAAGACTTCATGAACTGTATGGATTAAT
AGGAAAGTTCGAATCGGTTATGAGTTGCATATCTCTCTATAGGTGGTTTT
GCTCCGTTGAGTATAGCAAGGAGTTATCTCGAATGGAAGCTTGTAAGTTA
TTCAGCTTGATGATGATTCACATACATCTGCAAGAACAGGGAAATGATGA
AGATGTTCAGAATCTGGCCAATAGCGCAAACCTCTAA

Coding sequence (CDS) from alignment at tig00000221_pilon:54172..55608+

>Ggra117.t1 ID=Ggra117.t1|Name=Ggra117.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1437bp|location=Sequence derived from alignment at tig00000221_pilon:54172..55608+ (Gracilaria gracilis GNS1m male)
ATGTCATCAGCGCGCTTTGTTGTTGTCCTTCATCCTCAAACTGGCGCGAT
TCTTGCTAGGGAGAATTATCAACTACCAAGCATTGACTACGATGGAGACA
GCGTTACAAACTTGAGGGAGCTTTGCCAGAATGTTCAGAAACTGTTATGT
ATAAGTTTCGGAATATTTTTATTGAGAGCAGAGGGTGAAGACACTAGGAG
CTCGGGAGAAGGAAGCACTCTGGATCATCGAATGAATGTGTTGATCTTTG
AAGTTTTGTCGCAAGCAGTTGCCCCAACTCTGCCGGGTTTGCTGTGGGTA
CCTAAAACTGAGGCTTTGCGTATCTCGTCGGGGTCAAAAGAGACCTATGT
AACGCAATTCCTTCACAAATACCAGCAAAGGGGGCTTTCAAACGCGGAGA
ACCGTATGTATTCGTACTCTATTCCGGGCTGGATCACAGAAGCTTCCAAC
TGGATACGGGAAGAATCCTATTCGCATGGCTTATGCGTATCAGAGATTGA
GCAAGTCACTCGGAAGGTTGAAGGATGCATAATCCGCACCTTAACGAGAT
GCGGGTCAATAGTATATTTCAAAGCAATTGGTGCCACGGCATTTGTGGAC
GAGTTGACTGTCACCGCAAGCATTGCACAGGTGATGCCCATGTATTTTGA
CGAACCTCTGAGCGTGGACAAGAATCGGAAGTGGATGCTCATGCGGGATC
AAGGACAAAGGTTTGTTAATGGAAATGCCATGTCAACCAAAACGAATCGC
AATACATTCCGAGCTGTGCTGACAAAGTGGGGGAGCATTCAGCGGGAATC
AATCCCACTGATCAGCGATTTCCAAGAGAAAGGGGTCCAAGTAGTTGGCG
GAACTTTCCTTCGTGGCCTGGTTACTGAAATGTTTTCCGATTCTGATTGG
ACTTCGAAGTGCTACGAAGAAGTGCAGAGAATGATCGGCAGTGTTCCTGT
TTCATTTGACGCAGAAGACACCTTGTTGATAGACCTTCTCTCCGATACTT
GTGCACAGCTTTCCCAATATGAGCTTCCAATGACGCTCGTTCATGGTGAT
TTGAACGAAAGTAATATATTATATGAAAAGAATGCGTTTCGTTTCATCGA
CTTTGCCTCTACCTGTGTATCTTATCCGCTTCGAGACGCGTACTGGTTTG
CTCATGATTGTGGTGTTGAGGAGAGCGACTTGGATTTCTACTTTGAAATT
TGGGAACACTATGAAAGCATTGAAAGACTTCATGAACTGTATGGATTAAT
AGGAAAGTTCGAATCGGTTATGAGTTGCATATCTCTCTATAGGTGGTTTT
GCTCCGTTGAGTATAGCAAGGAGTTATCTCGAATGGAAGCTTGTAAGTTA
TTCAGCTTGATGATGATTCACATACATCTGCAAGAACAGGGAAATGATGA
AGATGTTCAGAATCTGGCCAATAGCGCAAACCTCTAA