Ggra1169.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1169.t1
Unique NameGgra1169.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length254
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:39783..40544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2711.XP_006486384.1
PFAMsFKBP_C
Max annot lvl35493|Streptophyta
KEGG koko:K01802
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
Evalue4.73e-21
EggNOG OGsCOG0545@1|root,KOG0543@2759|Eukaryota,37N4T@33090|Viridiplantae,3GC45@35493|Streptophyta
EC5.2.1.8
DescriptionPeptidyl-prolyl cis-trans isomerase
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1169Ggra1169Gracilaria gracilis GNS1m malegenetig00000237_pilon 39783..40544 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1169.t1.stop1Ggra1169.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000237_pilon 39783..39785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1169.t1.CDS1Ggra1169.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000237_pilon 39783..40544 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1169.t1.exon1Ggra1169.t1.exon1Gracilaria gracilis GNS1m maleexontig00000237_pilon 39783..40544 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1169.t1.start1Ggra1169.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000237_pilon 40542..40544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1169.t1Ggra1169.t1Gracilaria gracilis GNS1m malepolypeptidetig00000237_pilon 39783..40544 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1169.t1 ID=Ggra1169.t1|Name=Ggra1169.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=254bp
MDLGNWDDDDFVTPAAGPPPNEDLDDLFEFTENLTIDDFPDTTGAGNGKP
ELPPLPPGVIDLTNGQRGVLLEHKKTVEQNPKPSQEEPFVELHYEGTLVA
TGEKFDSSKEQNYTMIVQLDIPPSGKSSVIRGLEIGLREVRAGEHVVLTV
SSAYAYGKEGATDIPPDSDLKFDIEVLDVRATHKKVVIVDTSSKDLSRLE
TVRREREIAQMRREEEEQRKEDERQRKAARAAAIREKLANKNKGGKKGGK
KKK*
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spliced messenger RNA

>Ggra1169.t1 ID=Ggra1169.t1|Name=Ggra1169.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00000237_pilon:39783..40544- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCTTGGAAACTGGGACGATGACGATTTCGTTACCCCCGCAGCGGG
GCCACCTCCGAACGAAGATCTTGACGACCTGTTTGAGTTCACAGAGAATC
TCACGATCGACGACTTCCCTGACACAACCGGAGCGGGAAACGGCAAACCT
GAGTTACCTCCTTTGCCACCAGGTGTCATAGATTTAACTAACGGTCAACG
CGGTGTTCTTCTCGAACACAAGAAAACTGTCGAACAGAACCCGAAGCCCT
CTCAAGAAGAACCATTCGTCGAACTCCATTACGAAGGTACTTTGGTCGCC
ACAGGAGAAAAGTTCGATTCCAGCAAGGAACAGAACTACACCATGATTGT
TCAGCTTGATATACCCCCCTCTGGGAAGTCCTCCGTAATCAGAGGTTTGG
AAATAGGGCTCAGGGAAGTTCGCGCTGGCGAGCATGTTGTGCTCACGGTC
AGTTCAGCGTATGCATACGGAAAGGAAGGCGCAACTGATATTCCACCCGA
CTCAGATCTTAAATTCGATATCGAAGTACTAGATGTCCGAGCCACTCATA
AAAAGGTTGTCATTGTGGATACATCGTCAAAGGATTTGAGCCGTCTAGAA
ACGGTTCGTCGCGAACGAGAAATTGCTCAGATGCGTCGTGAAGAAGAAGA
GCAACGCAAAGAAGATGAGAGACAGCGAAAAGCAGCTCGCGCAGCGGCAA
TCCGTGAAAAACTGGCGAACAAGAACAAGGGTGGGAAGAAAGGCGGGAAG
AAGAAGAAATAA
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protein sequence of Ggra1169.t1

>Ggra1169.t1 ID=Ggra1169.t1|Name=Ggra1169.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=254bp
MDLGNWDDDDFVTPAAGPPPNEDLDDLFEFTENLTIDDFPDTTGAGNGKP
ELPPLPPGVIDLTNGQRGVLLEHKKTVEQNPKPSQEEPFVELHYEGTLVA
TGEKFDSSKEQNYTMIVQLDIPPSGKSSVIRGLEIGLREVRAGEHVVLTV
SSAYAYGKEGATDIPPDSDLKFDIEVLDVRATHKKVVIVDTSSKDLSRLE
TVRREREIAQMRREEEEQRKEDERQRKAARAAAIREKLANKNKGGKKGGK
KKK*
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mRNA from alignment at tig00000237_pilon:39783..40544-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1169.t1 ID=Ggra1169.t1|Name=Ggra1169.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00000237_pilon:39783..40544- (Gracilaria gracilis GNS1m male)
ATGGATCTTGGAAACTGGGACGATGACGATTTCGTTACCCCCGCAGCGGG
GCCACCTCCGAACGAAGATCTTGACGACCTGTTTGAGTTCACAGAGAATC
TCACGATCGACGACTTCCCTGACACAACCGGAGCGGGAAACGGCAAACCT
GAGTTACCTCCTTTGCCACCAGGTGTCATAGATTTAACTAACGGTCAACG
CGGTGTTCTTCTCGAACACAAGAAAACTGTCGAACAGAACCCGAAGCCCT
CTCAAGAAGAACCATTCGTCGAACTCCATTACGAAGGTACTTTGGTCGCC
ACAGGAGAAAAGTTCGATTCCAGCAAGGAACAGAACTACACCATGATTGT
TCAGCTTGATATACCCCCCTCTGGGAAGTCCTCCGTAATCAGAGGTTTGG
AAATAGGGCTCAGGGAAGTTCGCGCTGGCGAGCATGTTGTGCTCACGGTC
AGTTCAGCGTATGCATACGGAAAGGAAGGCGCAACTGATATTCCACCCGA
CTCAGATCTTAAATTCGATATCGAAGTACTAGATGTCCGAGCCACTCATA
AAAAGGTTGTCATTGTGGATACATCGTCAAAGGATTTGAGCCGTCTAGAA
ACGGTTCGTCGCGAACGAGAAATTGCTCAGATGCGTCGTGAAGAAGAAGA
GCAACGCAAAGAAGATGAGAGACAGCGAAAAGCAGCTCGCGCAGCGGCAA
TCCGTGAAAAACTGGCGAACAAGAACAAGGGTGGGAAGAAAGGCGGGAAG
AAGAAGAAATAA
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Coding sequence (CDS) from alignment at tig00000237_pilon:39783..40544-

>Ggra1169.t1 ID=Ggra1169.t1|Name=Ggra1169.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=762bp|location=Sequence derived from alignment at tig00000237_pilon:39783..40544- (Gracilaria gracilis GNS1m male)
ATGGATCTTGGAAACTGGGACGATGACGATTTCGTTACCCCCGCAGCGGG
GCCACCTCCGAACGAAGATCTTGACGACCTGTTTGAGTTCACAGAGAATC
TCACGATCGACGACTTCCCTGACACAACCGGAGCGGGAAACGGCAAACCT
GAGTTACCTCCTTTGCCACCAGGTGTCATAGATTTAACTAACGGTCAACG
CGGTGTTCTTCTCGAACACAAGAAAACTGTCGAACAGAACCCGAAGCCCT
CTCAAGAAGAACCATTCGTCGAACTCCATTACGAAGGTACTTTGGTCGCC
ACAGGAGAAAAGTTCGATTCCAGCAAGGAACAGAACTACACCATGATTGT
TCAGCTTGATATACCCCCCTCTGGGAAGTCCTCCGTAATCAGAGGTTTGG
AAATAGGGCTCAGGGAAGTTCGCGCTGGCGAGCATGTTGTGCTCACGGTC
AGTTCAGCGTATGCATACGGAAAGGAAGGCGCAACTGATATTCCACCCGA
CTCAGATCTTAAATTCGATATCGAAGTACTAGATGTCCGAGCCACTCATA
AAAAGGTTGTCATTGTGGATACATCGTCAAAGGATTTGAGCCGTCTAGAA
ACGGTTCGTCGCGAACGAGAAATTGCTCAGATGCGTCGTGAAGAAGAAGA
GCAACGCAAAGAAGATGAGAGACAGCGAAAAGCAGCTCGCGCAGCGGCAA
TCCGTGAAAAACTGGCGAACAAGAACAAGGGTGGGAAGAAAGGCGGGAAG
AAGAAGAAATAA
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