Ggra1168.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1168.t1
Unique NameGgra1168.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length535
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:36467..38241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CML243CT
Preferred nameIMPDH2
PFAMsCBS,IMPDH
Max annot lvl2759|Eukaryota
KEGG rclassRC00143,RC02207
KEGG koko:K00088
KEGG ReactionR01130,R08240
KEGG Pathwayko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110
KEGG ModuleM00050
GOsGO:0000166,GO:0000323,GO:0000785,GO:0000902,GO:0000904,GO:0001654,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003723,GO:0003729,GO:0003824,GO:0003938,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006928,GO:0006935,GO:0006950,GO:0006955,GO:0007154,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0007623,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009266,GO:0009267,GO:0009409,GO:0009605,GO:0009607,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0009991,GO:0010033,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0022008,GO:0022607,GO:0030030,GO:0030141,GO:0030154,GO:0030182,GO:0030447,GO:0031175,GO:0031347,GO:0031349,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032502,GO:0032940,GO:0032943,GO:0032989,GO:0032990,GO:0033554,GO:0034097,GO:0034404,GO:0034641,GO:0034654,GO:0034774,GO:0035578,GO:0035690,GO:0035821,GO:0036094,GO:0036170,GO:0036180,GO:0036230,GO:0040007,GO:0040011,GO:0042119,GO:0042221,GO:0042278,GO:0042330,GO:0042451,GO:0042455,GO:0042493,GO:0042582,GO:0042594,GO:0043010,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043473,GO:0043933,GO:0044003,GO:0044085,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044403,GO:0044416,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046039,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0046903,GO:0048066,GO:0048468,GO:0048511,GO:0048513,GO:0048518,GO:0048583,GO:0048584,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052251,GO:0052255,GO:0052509,GO:0052510,GO:0055086,GO:0055114,GO:0060041,GO:0060205,GO:0061564,GO:0065003,GO:0065007,GO:0070013,GO:0070661,GO:0070670,GO:0070887,GO:0071310,GO:0071345,GO:0071353,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0072522,GO:0075136,GO:0080134,GO:0090407,GO:0097159,GO:0097485,GO:0097708,GO:0099503,GO:0101002,GO:0120036,GO:0120039,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1904813
Evalue5.46e-273
EggNOG OGsCOG0516@1|root,KOG2550@2759|Eukaryota
EC1.1.1.205
DescriptionIMP dehydrogenase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1168Ggra1168Gracilaria gracilis GNS1m malegenetig00000237_pilon 36467..38241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1168.t1Ggra1168.t1Gracilaria gracilis GNS1m malepolypeptidetig00000237_pilon 36467..38241 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1168.t1.start1Ggra1168.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000237_pilon 36467..36469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1168.t1.CDS1Ggra1168.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000237_pilon 36467..36540 +
Ggra1168.t1.CDS2Ggra1168.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000237_pilon 36632..36707 +
Ggra1168.t1.CDS3Ggra1168.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000237_pilon 36787..38241 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1168.t1.exon1Ggra1168.t1.exon1Gracilaria gracilis GNS1m maleexontig00000237_pilon 36467..36540 +
Ggra1168.t1.exon2Ggra1168.t1.exon2Gracilaria gracilis GNS1m maleexontig00000237_pilon 36632..36707 +
Ggra1168.t1.exon3Ggra1168.t1.exon3Gracilaria gracilis GNS1m maleexontig00000237_pilon 36787..38241 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1168.t1.intron1Ggra1168.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000237_pilon 36541..36631 +
Ggra1168.t1.intron2Ggra1168.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000237_pilon 36708..36786 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1168.t1.stop1Ggra1168.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000237_pilon 38239..38241 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1168.t1 ID=Ggra1168.t1|Name=Ggra1168.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=535bp
MAPVTNGSMNTNGPNVQSEPKKSPTPAFPPEDLFRFQDGAAALDFLDSGI
VGYTYGDFVMLPGHIYFGVEDVSLKTRITRNTQIQLPLVSSPMDTVTESE
MAINMALQGGIGIIHYNNSIREQKREVDRVKRYENGFITDPKTLSPTNTV
RDALDIKNRYGFMGIPITESGGMNSKLVGIVTNRDVEFVRDKNTPLGDIM
VTELQTATEGCSLELAYSILKESKKGKLPIVNERFELVGLVARTDILKNR
DFPESSKDKTGKRLLCGASMGTRPADRERLDALVEVGVDVIMLDSSQGDS
VYQLDMLKYIKNKYPDLEVVAGNVVTQNQAYHLIKAGADGIRIGMGSGSI
CTTQEVMACGRAQATAVYRVSKLAREFDVPCIADGGISSSGHIIKGLACG
ASSVMMGGMLAGTEESPGEYFYKDGVRLKKYRGMGSADAMRKGSSVRYFS
EDDRIRVAQGVSGAVADKGSVKRFLPYLRMGVKHGFQDLGIRSITELHGQ
MYDGTLRFQVRTPAAQLEGNVHSLFTYEKSTHSG*
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spliced messenger RNA

>Ggra1168.t1 ID=Ggra1168.t1|Name=Ggra1168.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1605bp|location=Sequence derived from alignment at tig00000237_pilon:36467..38241+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCAGTTACCAATGGTTCGATGAACACAAATGGACCAAATGTGCA
GAGCGAACCTAAGAAGAGTCCCACACCCGCTTTCCCTCCTGAGGATCTAT
TTCGCTTTCAAGATGGTGCTGCAGCATTGGACTTTCTGGATTCCGGGATA
GTTGGTTATACATATGGGGACTTTGTGATGTTACCGGGACATATTTATTT
CGGTGTCGAAGATGTTTCGCTGAAGACTCGCATAACTCGCAACACTCAAA
TTCAGCTCCCGCTTGTCAGTTCACCCATGGACACTGTTACAGAATCCGAG
ATGGCTATCAATATGGCGTTGCAAGGGGGTATCGGCATCATTCATTACAA
TAACAGTATTCGAGAGCAGAAGCGTGAGGTCGATCGTGTAAAGAGATACG
AAAACGGCTTCATCACAGACCCGAAGACACTGAGCCCGACAAATACTGTT
CGCGACGCCTTAGATATCAAGAACCGATACGGATTCATGGGCATTCCTAT
AACTGAAAGCGGAGGAATGAACAGCAAGTTGGTGGGAATTGTAACAAATC
GTGATGTTGAATTCGTTCGGGACAAGAACACTCCATTGGGTGATATAATG
GTTACTGAACTTCAGACCGCGACTGAAGGTTGTTCTCTTGAACTTGCCTA
TTCCATCCTTAAGGAGAGCAAGAAGGGCAAGTTACCTATCGTGAACGAGC
GCTTCGAGCTTGTTGGCCTCGTTGCGAGAACTGACATTCTGAAGAATCGA
GACTTTCCAGAGTCTTCGAAGGACAAGACCGGGAAGAGACTCCTGTGTGG
TGCGTCCATGGGCACGAGGCCAGCGGACAGGGAACGTCTTGATGCATTAG
TTGAGGTTGGGGTTGACGTCATCATGCTGGATTCAAGTCAAGGTGATTCT
GTTTACCAGCTGGATATGTTGAAATACATTAAGAATAAGTACCCAGACCT
AGAGGTTGTGGCAGGAAATGTCGTGACACAGAACCAAGCTTACCATCTGA
TCAAGGCTGGTGCCGACGGTATTCGAATCGGTATGGGAAGTGGATCCATT
TGCACGACTCAGGAAGTAATGGCATGCGGAAGAGCACAAGCAACAGCTGT
GTACCGCGTTTCCAAGCTTGCCCGTGAGTTCGATGTACCGTGTATTGCTG
ACGGGGGGATTTCGTCGTCCGGACACATTATCAAAGGTCTGGCATGTGGT
GCATCCTCTGTCATGATGGGTGGCATGCTTGCCGGCACGGAAGAAAGCCC
TGGCGAATATTTCTATAAGGACGGTGTTCGCCTAAAGAAATATCGTGGGA
TGGGAAGTGCTGATGCCATGAGAAAAGGATCCAGCGTGAGATATTTCTCT
GAAGATGACCGTATTCGAGTCGCTCAGGGAGTATCCGGAGCGGTTGCCGA
CAAAGGATCCGTGAAGAGATTCCTCCCCTATTTACGCATGGGTGTTAAAC
ATGGGTTCCAAGACCTTGGTATCCGAAGCATCACAGAGCTCCACGGTCAG
ATGTACGACGGAACTCTAAGGTTCCAAGTAAGGACTCCTGCCGCACAGTT
AGAGGGTAATGTCCATTCTCTATTCACTTATGAAAAGTCGACCCACAGTG
GATAG
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protein sequence of Ggra1168.t1

>Ggra1168.t1 ID=Ggra1168.t1|Name=Ggra1168.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=535bp
MAPVTNGSMNTNGPNVQSEPKKSPTPAFPPEDLFRFQDGAAALDFLDSGI
VGYTYGDFVMLPGHIYFGVEDVSLKTRITRNTQIQLPLVSSPMDTVTESE
MAINMALQGGIGIIHYNNSIREQKREVDRVKRYENGFITDPKTLSPTNTV
RDALDIKNRYGFMGIPITESGGMNSKLVGIVTNRDVEFVRDKNTPLGDIM
VTELQTATEGCSLELAYSILKESKKGKLPIVNERFELVGLVARTDILKNR
DFPESSKDKTGKRLLCGASMGTRPADRERLDALVEVGVDVIMLDSSQGDS
VYQLDMLKYIKNKYPDLEVVAGNVVTQNQAYHLIKAGADGIRIGMGSGSI
CTTQEVMACGRAQATAVYRVSKLAREFDVPCIADGGISSSGHIIKGLACG
ASSVMMGGMLAGTEESPGEYFYKDGVRLKKYRGMGSADAMRKGSSVRYFS
EDDRIRVAQGVSGAVADKGSVKRFLPYLRMGVKHGFQDLGIRSITELHGQ
MYDGTLRFQVRTPAAQLEGNVHSLFTYEKSTHSG*
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mRNA from alignment at tig00000237_pilon:36467..38241+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1168.t1 ID=Ggra1168.t1|Name=Ggra1168.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1775bp|location=Sequence derived from alignment at tig00000237_pilon:36467..38241+ (Gracilaria gracilis GNS1m male)
ATGGCACCAGTTACCAATGGTTCGATGAACACAAATGGACCAAATGTGCA
GAGCGAACCTAAGAAGAGTCCCACGTACGTTCCTTACCTACCCTAGAAAA
CCCCCTCTACATAACTCCACAATCAATCTTGCAGAAATTGACTCTCTCAG
CTACTCTTTTTGCAGACCCGCTTTCCCTCCTGAGGATCTATTTCGCTTTC
AAGATGGTGCTGCAGCATTGGACTTTCTGGATTCCGGGATAGTAAGTTTC
TTGCTTGAAGCGTAAAAAGACGATGTATTGAAACTGGAATGTACTGACTA
TTTCGGCTCTTTGAAACTAGGTTGGTTATACATATGGGGACTTTGTGATG
TTACCGGGACATATTTATTTCGGTGTCGAAGATGTTTCGCTGAAGACTCG
CATAACTCGCAACACTCAAATTCAGCTCCCGCTTGTCAGTTCACCCATGG
ACACTGTTACAGAATCCGAGATGGCTATCAATATGGCGTTGCAAGGGGGT
ATCGGCATCATTCATTACAATAACAGTATTCGAGAGCAGAAGCGTGAGGT
CGATCGTGTAAAGAGATACGAAAACGGCTTCATCACAGACCCGAAGACAC
TGAGCCCGACAAATACTGTTCGCGACGCCTTAGATATCAAGAACCGATAC
GGATTCATGGGCATTCCTATAACTGAAAGCGGAGGAATGAACAGCAAGTT
GGTGGGAATTGTAACAAATCGTGATGTTGAATTCGTTCGGGACAAGAACA
CTCCATTGGGTGATATAATGGTTACTGAACTTCAGACCGCGACTGAAGGT
TGTTCTCTTGAACTTGCCTATTCCATCCTTAAGGAGAGCAAGAAGGGCAA
GTTACCTATCGTGAACGAGCGCTTCGAGCTTGTTGGCCTCGTTGCGAGAA
CTGACATTCTGAAGAATCGAGACTTTCCAGAGTCTTCGAAGGACAAGACC
GGGAAGAGACTCCTGTGTGGTGCGTCCATGGGCACGAGGCCAGCGGACAG
GGAACGTCTTGATGCATTAGTTGAGGTTGGGGTTGACGTCATCATGCTGG
ATTCAAGTCAAGGTGATTCTGTTTACCAGCTGGATATGTTGAAATACATT
AAGAATAAGTACCCAGACCTAGAGGTTGTGGCAGGAAATGTCGTGACACA
GAACCAAGCTTACCATCTGATCAAGGCTGGTGCCGACGGTATTCGAATCG
GTATGGGAAGTGGATCCATTTGCACGACTCAGGAAGTAATGGCATGCGGA
AGAGCACAAGCAACAGCTGTGTACCGCGTTTCCAAGCTTGCCCGTGAGTT
CGATGTACCGTGTATTGCTGACGGGGGGATTTCGTCGTCCGGACACATTA
TCAAAGGTCTGGCATGTGGTGCATCCTCTGTCATGATGGGTGGCATGCTT
GCCGGCACGGAAGAAAGCCCTGGCGAATATTTCTATAAGGACGGTGTTCG
CCTAAAGAAATATCGTGGGATGGGAAGTGCTGATGCCATGAGAAAAGGAT
CCAGCGTGAGATATTTCTCTGAAGATGACCGTATTCGAGTCGCTCAGGGA
GTATCCGGAGCGGTTGCCGACAAAGGATCCGTGAAGAGATTCCTCCCCTA
TTTACGCATGGGTGTTAAACATGGGTTCCAAGACCTTGGTATCCGAAGCA
TCACAGAGCTCCACGGTCAGATGTACGACGGAACTCTAAGGTTCCAAGTA
AGGACTCCTGCCGCACAGTTAGAGGGTAATGTCCATTCTCTATTCACTTA
TGAAAAGTCGACCCACAGTGGATAG
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Coding sequence (CDS) from alignment at tig00000237_pilon:36467..38241+

>Ggra1168.t1 ID=Ggra1168.t1|Name=Ggra1168.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1605bp|location=Sequence derived from alignment at tig00000237_pilon:36467..38241+ (Gracilaria gracilis GNS1m male)
ATGGCACCAGTTACCAATGGTTCGATGAACACAAATGGACCAAATGTGCA
GAGCGAACCTAAGAAGAGTCCCACACCCGCTTTCCCTCCTGAGGATCTAT
TTCGCTTTCAAGATGGTGCTGCAGCATTGGACTTTCTGGATTCCGGGATA
GTTGGTTATACATATGGGGACTTTGTGATGTTACCGGGACATATTTATTT
CGGTGTCGAAGATGTTTCGCTGAAGACTCGCATAACTCGCAACACTCAAA
TTCAGCTCCCGCTTGTCAGTTCACCCATGGACACTGTTACAGAATCCGAG
ATGGCTATCAATATGGCGTTGCAAGGGGGTATCGGCATCATTCATTACAA
TAACAGTATTCGAGAGCAGAAGCGTGAGGTCGATCGTGTAAAGAGATACG
AAAACGGCTTCATCACAGACCCGAAGACACTGAGCCCGACAAATACTGTT
CGCGACGCCTTAGATATCAAGAACCGATACGGATTCATGGGCATTCCTAT
AACTGAAAGCGGAGGAATGAACAGCAAGTTGGTGGGAATTGTAACAAATC
GTGATGTTGAATTCGTTCGGGACAAGAACACTCCATTGGGTGATATAATG
GTTACTGAACTTCAGACCGCGACTGAAGGTTGTTCTCTTGAACTTGCCTA
TTCCATCCTTAAGGAGAGCAAGAAGGGCAAGTTACCTATCGTGAACGAGC
GCTTCGAGCTTGTTGGCCTCGTTGCGAGAACTGACATTCTGAAGAATCGA
GACTTTCCAGAGTCTTCGAAGGACAAGACCGGGAAGAGACTCCTGTGTGG
TGCGTCCATGGGCACGAGGCCAGCGGACAGGGAACGTCTTGATGCATTAG
TTGAGGTTGGGGTTGACGTCATCATGCTGGATTCAAGTCAAGGTGATTCT
GTTTACCAGCTGGATATGTTGAAATACATTAAGAATAAGTACCCAGACCT
AGAGGTTGTGGCAGGAAATGTCGTGACACAGAACCAAGCTTACCATCTGA
TCAAGGCTGGTGCCGACGGTATTCGAATCGGTATGGGAAGTGGATCCATT
TGCACGACTCAGGAAGTAATGGCATGCGGAAGAGCACAAGCAACAGCTGT
GTACCGCGTTTCCAAGCTTGCCCGTGAGTTCGATGTACCGTGTATTGCTG
ACGGGGGGATTTCGTCGTCCGGACACATTATCAAAGGTCTGGCATGTGGT
GCATCCTCTGTCATGATGGGTGGCATGCTTGCCGGCACGGAAGAAAGCCC
TGGCGAATATTTCTATAAGGACGGTGTTCGCCTAAAGAAATATCGTGGGA
TGGGAAGTGCTGATGCCATGAGAAAAGGATCCAGCGTGAGATATTTCTCT
GAAGATGACCGTATTCGAGTCGCTCAGGGAGTATCCGGAGCGGTTGCCGA
CAAAGGATCCGTGAAGAGATTCCTCCCCTATTTACGCATGGGTGTTAAAC
ATGGGTTCCAAGACCTTGGTATCCGAAGCATCACAGAGCTCCACGGTCAG
ATGTACGACGGAACTCTAAGGTTCCAAGTAAGGACTCCTGCCGCACAGTT
AGAGGGTAATGTCCATTCTCTATTCACTTATGAAAAGTCGACCCACAGTG
GATAG
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