Ggra1138.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1138.t1
Unique Name	Ggra1138.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	670

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000140_pilon	contig	tig00000140_pilon:60195..62407 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1138	Ggra1138	Gracilaria gracilis GNS1m male	gene	tig00000140_pilon 60195..62407 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1138.t1	Ggra1138.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000140_pilon 60195..62407 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1138.t1.start1	Ggra1138.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000140_pilon 60195..60197 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1138.t1.CDS1	Ggra1138.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000140_pilon 60195..62086 +
Ggra1138.t1.CDS2	Ggra1138.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000140_pilon 62290..62407 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1138.t1.exon1	Ggra1138.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000140_pilon 60195..62086 +
Ggra1138.t1.exon2	Ggra1138.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000140_pilon 62290..62407 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1138.t1.intron1	Ggra1138.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000140_pilon 62087..62289 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1138.t1.stop1	Ggra1138.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000140_pilon 62405..62407 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000140_pilon:60195..62407+
coding sequence from alignment at tig00000140_pilon:60195..62407+

mRNA sequence

>Ggra1138.t1 ID=Ggra1138.t1|Name=Ggra1138.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=670bp
MEAVTIFPSLVNSSAKTFRLFKSYFHFKNDVDFNALKRLSSADRLAESRN
FTNCGWPSNMQAHQSTPLMRAVYDCLDAVYSFLAAAESEQSQPGEIAFFS
VQLQAREGEHHNAAVLACHSIRLSSKHSEAEAFEQVCAFVKAVHQLAEAD
EETSNNRHLCVEANVMDDPRHQRAEYENDEIISLAFLTASSLIQLAGSQH
DGTFIKLVPGHMPVSASSGSSVYIKARWKEYPSQCYKVASQVRNVLDDST
VQYRDFAQVLQNIDVEEETKNVLFIGSTGSGKSHSARWLISQLGGSPEQR
FQTSRSSSLTSHLDFVQQGDIRVWDTPGLHDAYNRDAEYLPELERHLMDM
GFISAIVLCFNSICRISAMERYTIDMYSNLLGEVADRLIVFVNGQPTSVT
NIQRQTLIRSLSKNAKIRVDSEQIFDMGPNSTKQKENCDAAFGLLRLFCD
RKPLKAGPMDRLLKGLVEIQTLCSDKAIAEAKEKLLFYSAEALRKRLVAP
KRSHPLRLCPSLGNSLILSDGKMHLLGQNAPVIVEHHLEVPTKMRQNFLA
RINLVFKGVFFKGKEAEEVINIVKKFRLVFRSLPADQGQSSRKGKNATVM
KLSYQLWNVDDALSDDVRDFALHIMGEDKKSQVNRIAIMVYGDDKTAATE
FKAFLRKKSIHRSRKLSPN*

spliced messenger RNA

>Ggra1138.t1 ID=Ggra1138.t1|Name=Ggra1138.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2010bp|location=Sequence derived from alignment at tig00000140_pilon:60195..62407+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCGGTAACCATATTTCCGTCCCTGGTGAATTCATCAGCCAAAAC
TTTCCGTCTTTTCAAGTCTTATTTCCATTTCAAGAATGATGTGGACTTTA
ACGCCTTGAAACGACTCTCTTCGGCAGACCGGCTCGCTGAAAGTCGCAAC
TTCACCAATTGTGGCTGGCCCTCTAATATGCAGGCACACCAATCCACACC
ATTGATGCGCGCCGTCTATGATTGTCTTGACGCTGTGTACAGCTTTCTTG
CCGCTGCAGAATCGGAGCAATCCCAGCCTGGAGAAATTGCATTTTTTTCA
GTTCAACTTCAAGCTCGTGAAGGAGAACACCACAATGCAGCCGTTCTTGC
GTGCCATAGCATACGACTGAGTTCCAAGCACTCAGAAGCGGAGGCATTCG
AGCAGGTTTGCGCCTTTGTTAAAGCTGTTCATCAACTCGCAGAGGCTGAT
GAAGAAACGTCCAACAACCGTCATCTATGTGTCGAAGCAAACGTCATGGA
CGATCCGCGCCATCAGAGAGCGGAATATGAGAATGACGAGATCATCTCAT
TGGCGTTCTTGACGGCCAGCTCATTAATTCAGCTTGCCGGCTCACAACAT
GATGGCACGTTCATAAAACTGGTCCCTGGTCATATGCCTGTGAGCGCTTC
ATCTGGCAGTTCAGTGTACATTAAAGCTAGATGGAAAGAGTACCCGTCAC
AGTGTTACAAGGTAGCGTCTCAAGTGAGAAATGTGCTTGACGACAGCACT
GTGCAATATAGAGACTTTGCCCAAGTGCTGCAGAACATTGACGTCGAGGA
GGAAACTAAGAACGTACTTTTTATCGGCTCCACAGGTTCCGGAAAGTCAC
ACTCTGCACGTTGGCTTATAAGTCAACTTGGTGGTTCACCTGAGCAGCGC
TTCCAGACCTCTAGGAGCAGCTCCCTGACTTCCCATTTGGATTTTGTGCA
GCAAGGCGATATTCGTGTCTGGGACACACCAGGACTCCATGATGCGTACA
ATCGAGATGCTGAATACTTACCCGAACTGGAGCGGCACCTGATGGATATG
GGCTTCATTAGTGCAATTGTTTTATGTTTCAATTCAATATGCCGTATCAG
TGCTATGGAACGCTACACCATCGATATGTACTCTAATCTTCTCGGAGAAG
TTGCCGATCGTCTGATAGTATTTGTGAATGGACAACCTACCTCTGTGACC
AACATTCAGCGTCAAACCTTGATTCGCTCTTTGTCAAAGAATGCTAAAAT
CCGTGTGGATTCCGAGCAAATTTTTGACATGGGACCTAACAGCACCAAAC
AGAAAGAGAATTGCGATGCTGCATTTGGCCTTTTGCGATTGTTTTGCGAC
AGGAAGCCGCTAAAAGCTGGCCCCATGGATCGATTGCTGAAAGGACTGGT
GGAAATTCAAACGCTTTGTAGTGACAAAGCTATTGCTGAAGCAAAAGAAA
AGCTACTGTTCTACTCCGCGGAGGCGTTGAGAAAACGGCTGGTAGCTCCC
AAGCGCTCACATCCACTGAGACTCTGTCCAAGTTTGGGGAATTCGCTCAT
CTTGAGTGACGGTAAGATGCACTTGCTTGGCCAGAATGCACCAGTCATCG
TCGAGCACCACCTCGAGGTGCCGACAAAGATGCGCCAGAATTTTCTGGCG
AGGATTAATTTGGTGTTCAAAGGAGTGTTCTTCAAGGGAAAAGAGGCTGA
AGAAGTTATCAACATTGTGAAAAAATTCAGACTTGTGTTCCGCAGCTTGC
CTGCTGACCAAGGTCAAAGCAGCAGGAAGGGTAAGAATGCCACGGTGATG
AAGCTGTCATATCAGCTGTGGAATGTAGATGACGCTCTGTCGGATGATGT
GCGGGACTTTGCACTGCACATTATGGGTGAGGATAAGAAAAGCCAGGTCA
ACAGAATCGCCATCATGGTCTATGGTGATGATAAGACAGCGGCCACCGAA
TTCAAGGCCTTTCTGCGGAAAAAGAGCATTCACCGTTCTCGAAAGCTTTC
CCCCAATTAG

protein sequence of Ggra1138.t1

>Ggra1138.t1 ID=Ggra1138.t1|Name=Ggra1138.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=670bp
MEAVTIFPSLVNSSAKTFRLFKSYFHFKNDVDFNALKRLSSADRLAESRN
FTNCGWPSNMQAHQSTPLMRAVYDCLDAVYSFLAAAESEQSQPGEIAFFS
VQLQAREGEHHNAAVLACHSIRLSSKHSEAEAFEQVCAFVKAVHQLAEAD
EETSNNRHLCVEANVMDDPRHQRAEYENDEIISLAFLTASSLIQLAGSQH
DGTFIKLVPGHMPVSASSGSSVYIKARWKEYPSQCYKVASQVRNVLDDST
VQYRDFAQVLQNIDVEEETKNVLFIGSTGSGKSHSARWLISQLGGSPEQR
FQTSRSSSLTSHLDFVQQGDIRVWDTPGLHDAYNRDAEYLPELERHLMDM
GFISAIVLCFNSICRISAMERYTIDMYSNLLGEVADRLIVFVNGQPTSVT
NIQRQTLIRSLSKNAKIRVDSEQIFDMGPNSTKQKENCDAAFGLLRLFCD
RKPLKAGPMDRLLKGLVEIQTLCSDKAIAEAKEKLLFYSAEALRKRLVAP
KRSHPLRLCPSLGNSLILSDGKMHLLGQNAPVIVEHHLEVPTKMRQNFLA
RINLVFKGVFFKGKEAEEVINIVKKFRLVFRSLPADQGQSSRKGKNATVM
KLSYQLWNVDDALSDDVRDFALHIMGEDKKSQVNRIAIMVYGDDKTAATE
FKAFLRKKSIHRSRKLSPN*

mRNA from alignment at tig00000140_pilon:60195..62407+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1138.t1 ID=Ggra1138.t1|Name=Ggra1138.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2213bp|location=Sequence derived from alignment at tig00000140_pilon:60195..62407+ (Gracilaria gracilis GNS1m male)
ATGGAAGCGGTAACCATATTTCCGTCCCTGGTGAATTCATCAGCCAAAAC
TTTCCGTCTTTTCAAGTCTTATTTCCATTTCAAGAATGATGTGGACTTTA
ACGCCTTGAAACGACTCTCTTCGGCAGACCGGCTCGCTGAAAGTCGCAAC
TTCACCAATTGTGGCTGGCCCTCTAATATGCAGGCACACCAATCCACACC
ATTGATGCGCGCCGTCTATGATTGTCTTGACGCTGTGTACAGCTTTCTTG
CCGCTGCAGAATCGGAGCAATCCCAGCCTGGAGAAATTGCATTTTTTTCA
GTTCAACTTCAAGCTCGTGAAGGAGAACACCACAATGCAGCCGTTCTTGC
GTGCCATAGCATACGACTGAGTTCCAAGCACTCAGAAGCGGAGGCATTCG
AGCAGGTTTGCGCCTTTGTTAAAGCTGTTCATCAACTCGCAGAGGCTGAT
GAAGAAACGTCCAACAACCGTCATCTATGTGTCGAAGCAAACGTCATGGA
CGATCCGCGCCATCAGAGAGCGGAATATGAGAATGACGAGATCATCTCAT
TGGCGTTCTTGACGGCCAGCTCATTAATTCAGCTTGCCGGCTCACAACAT
GATGGCACGTTCATAAAACTGGTCCCTGGTCATATGCCTGTGAGCGCTTC
ATCTGGCAGTTCAGTGTACATTAAAGCTAGATGGAAAGAGTACCCGTCAC
AGTGTTACAAGGTAGCGTCTCAAGTGAGAAATGTGCTTGACGACAGCACT
GTGCAATATAGAGACTTTGCCCAAGTGCTGCAGAACATTGACGTCGAGGA
GGAAACTAAGAACGTACTTTTTATCGGCTCCACAGGTTCCGGAAAGTCAC
ACTCTGCACGTTGGCTTATAAGTCAACTTGGTGGTTCACCTGAGCAGCGC
TTCCAGACCTCTAGGAGCAGCTCCCTGACTTCCCATTTGGATTTTGTGCA
GCAAGGCGATATTCGTGTCTGGGACACACCAGGACTCCATGATGCGTACA
ATCGAGATGCTGAATACTTACCCGAACTGGAGCGGCACCTGATGGATATG
GGCTTCATTAGTGCAATTGTTTTATGTTTCAATTCAATATGCCGTATCAG
TGCTATGGAACGCTACACCATCGATATGTACTCTAATCTTCTCGGAGAAG
TTGCCGATCGTCTGATAGTATTTGTGAATGGACAACCTACCTCTGTGACC
AACATTCAGCGTCAAACCTTGATTCGCTCTTTGTCAAAGAATGCTAAAAT
CCGTGTGGATTCCGAGCAAATTTTTGACATGGGACCTAACAGCACCAAAC
AGAAAGAGAATTGCGATGCTGCATTTGGCCTTTTGCGATTGTTTTGCGAC
AGGAAGCCGCTAAAAGCTGGCCCCATGGATCGATTGCTGAAAGGACTGGT
GGAAATTCAAACGCTTTGTAGTGACAAAGCTATTGCTGAAGCAAAAGAAA
AGCTACTGTTCTACTCCGCGGAGGCGTTGAGAAAACGGCTGGTAGCTCCC
AAGCGCTCACATCCACTGAGACTCTGTCCAAGTTTGGGGAATTCGCTCAT
CTTGAGTGACGGTAAGATGCACTTGCTTGGCCAGAATGCACCAGTCATCG
TCGAGCACCACCTCGAGGTGCCGACAAAGATGCGCCAGAATTTTCTGGCG
AGGATTAATTTGGTGTTCAAAGGAGTGTTCTTCAAGGGAAAAGAGGCTGA
AGAAGTTATCAACATTGTGAAAAAATTCAGACTTGTGTTCCGCAGCTTGC
CTGCTGACCAAGGTCAAAGCAGCAGGAAGGGTAAGAATGCCACGGTGATG
AAGCTGTCATATCAGCTGTGGAATGTAGATGACGCTCTGTCGGATGATGT
GCGGGACTTTGCACTGCACATTATGGGTGAGGATAAGAAAAGGTATGTTA
CAGTGTTCAAATCAATGAGAGAGAATTCCGTCACAGAGTAACCTTTGGAA
GATTGTGTTCTCGAGCGTGTCTGTGCTGTATGATACATCTAGTATATATA
TATATGTACGTGGAGTCAGGAAGCCACTCTGAATGAAGGGGAGCGTAGCG
ATTTACAAATACATCCGCTCACACTTCGTCCGCACCCCTCTCCAGCCAGG
TCAACAGAATCGCCATCATGGTCTATGGTGATGATAAGACAGCGGCCACC
GAATTCAAGGCCTTTCTGCGGAAAAAGAGCATTCACCGTTCTCGAAAGCT
TTCCCCCAATTAG

Coding sequence (CDS) from alignment at tig00000140_pilon:60195..62407+

>Ggra1138.t1 ID=Ggra1138.t1|Name=Ggra1138.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2010bp|location=Sequence derived from alignment at tig00000140_pilon:60195..62407+ (Gracilaria gracilis GNS1m male)
ATGGAAGCGGTAACCATATTTCCGTCCCTGGTGAATTCATCAGCCAAAAC
TTTCCGTCTTTTCAAGTCTTATTTCCATTTCAAGAATGATGTGGACTTTA
ACGCCTTGAAACGACTCTCTTCGGCAGACCGGCTCGCTGAAAGTCGCAAC
TTCACCAATTGTGGCTGGCCCTCTAATATGCAGGCACACCAATCCACACC
ATTGATGCGCGCCGTCTATGATTGTCTTGACGCTGTGTACAGCTTTCTTG
CCGCTGCAGAATCGGAGCAATCCCAGCCTGGAGAAATTGCATTTTTTTCA
GTTCAACTTCAAGCTCGTGAAGGAGAACACCACAATGCAGCCGTTCTTGC
GTGCCATAGCATACGACTGAGTTCCAAGCACTCAGAAGCGGAGGCATTCG
AGCAGGTTTGCGCCTTTGTTAAAGCTGTTCATCAACTCGCAGAGGCTGAT
GAAGAAACGTCCAACAACCGTCATCTATGTGTCGAAGCAAACGTCATGGA
CGATCCGCGCCATCAGAGAGCGGAATATGAGAATGACGAGATCATCTCAT
TGGCGTTCTTGACGGCCAGCTCATTAATTCAGCTTGCCGGCTCACAACAT
GATGGCACGTTCATAAAACTGGTCCCTGGTCATATGCCTGTGAGCGCTTC
ATCTGGCAGTTCAGTGTACATTAAAGCTAGATGGAAAGAGTACCCGTCAC
AGTGTTACAAGGTAGCGTCTCAAGTGAGAAATGTGCTTGACGACAGCACT
GTGCAATATAGAGACTTTGCCCAAGTGCTGCAGAACATTGACGTCGAGGA
GGAAACTAAGAACGTACTTTTTATCGGCTCCACAGGTTCCGGAAAGTCAC
ACTCTGCACGTTGGCTTATAAGTCAACTTGGTGGTTCACCTGAGCAGCGC
TTCCAGACCTCTAGGAGCAGCTCCCTGACTTCCCATTTGGATTTTGTGCA
GCAAGGCGATATTCGTGTCTGGGACACACCAGGACTCCATGATGCGTACA
ATCGAGATGCTGAATACTTACCCGAACTGGAGCGGCACCTGATGGATATG
GGCTTCATTAGTGCAATTGTTTTATGTTTCAATTCAATATGCCGTATCAG
TGCTATGGAACGCTACACCATCGATATGTACTCTAATCTTCTCGGAGAAG
TTGCCGATCGTCTGATAGTATTTGTGAATGGACAACCTACCTCTGTGACC
AACATTCAGCGTCAAACCTTGATTCGCTCTTTGTCAAAGAATGCTAAAAT
CCGTGTGGATTCCGAGCAAATTTTTGACATGGGACCTAACAGCACCAAAC
AGAAAGAGAATTGCGATGCTGCATTTGGCCTTTTGCGATTGTTTTGCGAC
AGGAAGCCGCTAAAAGCTGGCCCCATGGATCGATTGCTGAAAGGACTGGT
GGAAATTCAAACGCTTTGTAGTGACAAAGCTATTGCTGAAGCAAAAGAAA
AGCTACTGTTCTACTCCGCGGAGGCGTTGAGAAAACGGCTGGTAGCTCCC
AAGCGCTCACATCCACTGAGACTCTGTCCAAGTTTGGGGAATTCGCTCAT
CTTGAGTGACGGTAAGATGCACTTGCTTGGCCAGAATGCACCAGTCATCG
TCGAGCACCACCTCGAGGTGCCGACAAAGATGCGCCAGAATTTTCTGGCG
AGGATTAATTTGGTGTTCAAAGGAGTGTTCTTCAAGGGAAAAGAGGCTGA
AGAAGTTATCAACATTGTGAAAAAATTCAGACTTGTGTTCCGCAGCTTGC
CTGCTGACCAAGGTCAAAGCAGCAGGAAGGGTAAGAATGCCACGGTGATG
AAGCTGTCATATCAGCTGTGGAATGTAGATGACGCTCTGTCGGATGATGT
GCGGGACTTTGCACTGCACATTATGGGTGAGGATAAGAAAAGCCAGGTCA
ACAGAATCGCCATCATGGTCTATGGTGATGATAAGACAGCGGCCACCGAA
TTCAAGGCCTTTCTGCGGAAAAAGAGCATTCACCGTTCTCGAAAGCTTTC
CCCCAATTAG