Ggra1137.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1137.t1
Unique NameGgra1137.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length453
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000140_piloncontigtig00000140_pilon:58044..59578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1137Ggra1137Gracilaria gracilis GNS1m malegenetig00000140_pilon 58044..59578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1137.t1Ggra1137.t1Gracilaria gracilis GNS1m malepolypeptidetig00000140_pilon 58044..59578 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1137.t1.start1Ggra1137.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000140_pilon 58044..58046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1137.t1.CDS1Ggra1137.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000140_pilon 58044..58299 +
Ggra1137.t1.CDS2Ggra1137.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000140_pilon 58421..59351 +
Ggra1137.t1.CDS3Ggra1137.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000140_pilon 59407..59578 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1137.t1.exon1Ggra1137.t1.exon1Gracilaria gracilis GNS1m maleexontig00000140_pilon 58044..58299 +
Ggra1137.t1.exon2Ggra1137.t1.exon2Gracilaria gracilis GNS1m maleexontig00000140_pilon 58421..59351 +
Ggra1137.t1.exon3Ggra1137.t1.exon3Gracilaria gracilis GNS1m maleexontig00000140_pilon 59407..59578 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1137.t1.intron1Ggra1137.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000140_pilon 58300..58420 +
Ggra1137.t1.intron2Ggra1137.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000140_pilon 59352..59406 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1137.t1.stop1Ggra1137.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000140_pilon 59576..59578 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1137.t1 ID=Ggra1137.t1|Name=Ggra1137.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=453bp
MDSGVFDSQPLLLSVDVHTDDISINLAFSAASLLYAVLTVGWIIASSVFF
NGFQWRQTTNSRLYLIIKVDTFSVKDNLLHARRSPLLAVFDADDVFCGLD
CVFEPFPIVSAAVLLVIGEVIVEFGEEAIVPFSETIVGFGAEAMVPFPET
IVGFGAEATVPFSDTIAGFGAEAMVPFPETIVGFGAEATVPFSDTIVGFG
AEAMVPFPETIVGFGAEATVPFSDTIAGFGAEAMVPFPETIVGFGAEATV
PFSDTIAGFGAEAMVPFPETIVGFRAEAMVPFPETIVGFGAEATVPFSDT
IAGFGAEAMVPFPETIVGFGAEAMVPFSETIVEFGAEAMVPFSETIVEFG
AEAIVPFLGIIVGFGEKAIVPFLQTIVQFGGMVKEIPAEVVFSDSAQKKE
GHGLDIKTREQHMGTAFAEAFFAPTDGMGKRCELGEKETGDFGYRFSIVN
YG*
back to top

spliced messenger RNA

>Ggra1137.t1 ID=Ggra1137.t1|Name=Ggra1137.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1359bp|location=Sequence derived from alignment at tig00000140_pilon:58044..59578+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCAGGCGTATTCGACAGCCAGCCTCTCCTTCTCTCTGTTGATGT
ACATACCGACGACATCTCAATTAATCTTGCATTCTCGGCAGCCAGTTTAC
TATACGCTGTCTTAACCGTGGGATGGATAATCGCGTCGTCTGTATTCTTC
AATGGCTTCCAATGGCGACAGACCACCAATTCCCGGTTGTACCTCATCAT
TAAAGTCGATACTTTCTCCGTCAAGGACAACTTGCTTCATGCACGGAGAT
CGCCTTTGCTCGCAGTGTTTGATGCGGATGACGTGTTCTGTGGTTTGGAT
TGCGTATTTGAGCCGTTTCCCATCGTTTCAGCGGCTGTACTATTAGTTAT
TGGTGAGGTCATTGTCGAGTTTGGAGAGGAGGCTATCGTTCCGTTTTCGG
AGACCATTGTCGGTTTTGGAGCGGAGGCCATGGTTCCGTTTCCGGAGACC
ATTGTCGGTTTTGGAGCGGAGGCCACCGTTCCGTTCTCGGACACCATTGC
CGGTTTTGGAGCGGAGGCCATGGTTCCGTTTCCGGAGACCATTGTCGGTT
TTGGAGCGGAGGCCACCGTTCCGTTCTCGGACACTATTGTCGGTTTTGGA
GCGGAGGCCATGGTTCCGTTTCCGGAGACCATTGTCGGTTTTGGAGCGGA
GGCCACCGTTCCGTTCTCGGACACCATTGCCGGTTTTGGAGCGGAGGCCA
TGGTTCCGTTTCCGGAGACCATTGTCGGTTTTGGAGCGGAGGCCACCGTT
CCGTTCTCGGACACTATTGCCGGTTTTGGAGCGGAGGCCATGGTTCCGTT
TCCGGAGACCATTGTCGGTTTTAGAGCGGAGGCCATGGTTCCGTTTCCGG
AGACCATTGTCGGTTTTGGAGCGGAAGCCACCGTTCCGTTCTCGGACACC
ATTGCCGGTTTTGGAGCGGAGGCCATGGTTCCGTTTCCGGAGACCATTGT
CGGTTTTGGAGCGGAGGCCATGGTTCCGTTCTCGGAGACCATTGTCGAGT
TTGGAGCGGAGGCCATGGTTCCGTTCTCGGAGACCATTGTCGAGTTTGGA
GCGGAGGCCATCGTTCCGTTTTTGGGGATCATTGTCGGTTTTGGAGAGAA
AGCTATCGTTCCGTTCTTGCAGACCATAGTGCAGTTCGGTGGTATGGTTA
AGGAGATACCTGCTGAAGTTGTCTTCTCAGACTCAGCACAGAAGAAGGAG
GGACACGGTTTAGACATAAAAACCAGAGAGCAACACATGGGAACAGCGTT
TGCGGAGGCATTCTTTGCTCCAACTGATGGAATGGGAAAACGATGTGAAT
TGGGAGAGAAGGAAACAGGAGATTTTGGATACCGTTTCTCTATTGTGAAC
TACGGGTAA
back to top

protein sequence of Ggra1137.t1

>Ggra1137.t1 ID=Ggra1137.t1|Name=Ggra1137.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=453bp
MDSGVFDSQPLLLSVDVHTDDISINLAFSAASLLYAVLTVGWIIASSVFF
NGFQWRQTTNSRLYLIIKVDTFSVKDNLLHARRSPLLAVFDADDVFCGLD
CVFEPFPIVSAAVLLVIGEVIVEFGEEAIVPFSETIVGFGAEAMVPFPET
IVGFGAEATVPFSDTIAGFGAEAMVPFPETIVGFGAEATVPFSDTIVGFG
AEAMVPFPETIVGFGAEATVPFSDTIAGFGAEAMVPFPETIVGFGAEATV
PFSDTIAGFGAEAMVPFPETIVGFRAEAMVPFPETIVGFGAEATVPFSDT
IAGFGAEAMVPFPETIVGFGAEAMVPFSETIVEFGAEAMVPFSETIVEFG
AEAIVPFLGIIVGFGEKAIVPFLQTIVQFGGMVKEIPAEVVFSDSAQKKE
GHGLDIKTREQHMGTAFAEAFFAPTDGMGKRCELGEKETGDFGYRFSIVN
YG*
back to top

mRNA from alignment at tig00000140_pilon:58044..59578+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1137.t1 ID=Ggra1137.t1|Name=Ggra1137.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1535bp|location=Sequence derived from alignment at tig00000140_pilon:58044..59578+ (Gracilaria gracilis GNS1m male)
ATGGATTCAGGCGTATTCGACAGCCAGCCTCTCCTTCTCTCTGTTGATGT
ACATACCGACGACATCTCAATTAATCTTGCATTCTCGGCAGCCAGTTTAC
TATACGCTGTCTTAACCGTGGGATGGATAATCGCGTCGTCTGTATTCTTC
AATGGCTTCCAATGGCGACAGACCACCAATTCCCGGTTGTACCTCATCAT
TAAAGTCGATACTTTCTCCGTCAAGGACAACTTGCTTCATGCACGGAGAT
CGCCTTGTaacaactacaacagcaataacagctacgacagcagcgataat
accaccaactacGCGACCAACGTTAAAGGATCCGTTTTCATCTTCTGAAC
TGGGGCCTTCCCTCACTGGTACTCCAGTGCTCGCAGTGTTTGATGCGGAT
GACGTGTTCTGTGGTTTGGATTGCGTATTTGAGCCGTTTCCCATCGTTTC
AGCGGCTGTACTATTAGTTATTGGTGAGGTCATTGTCGAGTTTGGAGAGG
AGGCTATCGTTCCGTTTTCGGAGACCATTGTCGGTTTTGGAGCGGAGGCC
ATGGTTCCGTTTCCGGAGACCATTGTCGGTTTTGGAGCGGAGGCCACCGT
TCCGTTCTCGGACACCATTGCCGGTTTTGGAGCGGAGGCCATGGTTCCGT
TTCCGGAGACCATTGTCGGTTTTGGAGCGGAGGCCACCGTTCCGTTCTCG
GACACTATTGTCGGTTTTGGAGCGGAGGCCATGGTTCCGTTTCCGGAGAC
CATTGTCGGTTTTGGAGCGGAGGCCACCGTTCCGTTCTCGGACACCATTG
CCGGTTTTGGAGCGGAGGCCATGGTTCCGTTTCCGGAGACCATTGTCGGT
TTTGGAGCGGAGGCCACCGTTCCGTTCTCGGACACTATTGCCGGTTTTGG
AGCGGAGGCCATGGTTCCGTTTCCGGAGACCATTGTCGGTTTTAGAGCGG
AGGCCATGGTTCCGTTTCCGGAGACCATTGTCGGTTTTGGAGCGGAAGCC
ACCGTTCCGTTCTCGGACACCATTGCCGGTTTTGGAGCGGAGGCCATGGT
TCCGTTTCCGGAGACCATTGTCGGTTTTGGAGCGGAGGCCATGGTTCCGT
TCTCGGAGACCATTGTCGAGTTTGGAGCGGAGGCCATGGTTCCGTTCTCG
GAGACCATTGTCGAGTTTGGAGCGGAGGCCATCGTTCCGTTTTTGGGGAT
CATTGTCGGTTTTGGAGAGAAAGCTATCGTTCCGTTCTTGCAGACCATAG
TGCAGTTCGGTGGTATGGTTAAGGAGATACCTGCTGAAGTTGTCTTCTCA
GACTCAGCGTCATTTTGCCTTAAAGCAACCCAATTTTTGTCCAAGATAAC
CGTTCTACGAGAGACAGAAGAAGGAGGGACACGGTTTAGACATAAAAACC
AGAGAGCAACACATGGGAACAGCGTTTGCGGAGGCATTCTTTGCTCCAAC
TGATGGAATGGGAAAACGATGTGAATTGGGAGAGAAGGAAACAGGAGATT
TTGGATACCGTTTCTCTATTGTGAACTACGGGTAA
back to top

Coding sequence (CDS) from alignment at tig00000140_pilon:58044..59578+

>Ggra1137.t1 ID=Ggra1137.t1|Name=Ggra1137.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1359bp|location=Sequence derived from alignment at tig00000140_pilon:58044..59578+ (Gracilaria gracilis GNS1m male)
ATGGATTCAGGCGTATTCGACAGCCAGCCTCTCCTTCTCTCTGTTGATGT
ACATACCGACGACATCTCAATTAATCTTGCATTCTCGGCAGCCAGTTTAC
TATACGCTGTCTTAACCGTGGGATGGATAATCGCGTCGTCTGTATTCTTC
AATGGCTTCCAATGGCGACAGACCACCAATTCCCGGTTGTACCTCATCAT
TAAAGTCGATACTTTCTCCGTCAAGGACAACTTGCTTCATGCACGGAGAT
CGCCTTTGCTCGCAGTGTTTGATGCGGATGACGTGTTCTGTGGTTTGGAT
TGCGTATTTGAGCCGTTTCCCATCGTTTCAGCGGCTGTACTATTAGTTAT
TGGTGAGGTCATTGTCGAGTTTGGAGAGGAGGCTATCGTTCCGTTTTCGG
AGACCATTGTCGGTTTTGGAGCGGAGGCCATGGTTCCGTTTCCGGAGACC
ATTGTCGGTTTTGGAGCGGAGGCCACCGTTCCGTTCTCGGACACCATTGC
CGGTTTTGGAGCGGAGGCCATGGTTCCGTTTCCGGAGACCATTGTCGGTT
TTGGAGCGGAGGCCACCGTTCCGTTCTCGGACACTATTGTCGGTTTTGGA
GCGGAGGCCATGGTTCCGTTTCCGGAGACCATTGTCGGTTTTGGAGCGGA
GGCCACCGTTCCGTTCTCGGACACCATTGCCGGTTTTGGAGCGGAGGCCA
TGGTTCCGTTTCCGGAGACCATTGTCGGTTTTGGAGCGGAGGCCACCGTT
CCGTTCTCGGACACTATTGCCGGTTTTGGAGCGGAGGCCATGGTTCCGTT
TCCGGAGACCATTGTCGGTTTTAGAGCGGAGGCCATGGTTCCGTTTCCGG
AGACCATTGTCGGTTTTGGAGCGGAAGCCACCGTTCCGTTCTCGGACACC
ATTGCCGGTTTTGGAGCGGAGGCCATGGTTCCGTTTCCGGAGACCATTGT
CGGTTTTGGAGCGGAGGCCATGGTTCCGTTCTCGGAGACCATTGTCGAGT
TTGGAGCGGAGGCCATGGTTCCGTTCTCGGAGACCATTGTCGAGTTTGGA
GCGGAGGCCATCGTTCCGTTTTTGGGGATCATTGTCGGTTTTGGAGAGAA
AGCTATCGTTCCGTTCTTGCAGACCATAGTGCAGTTCGGTGGTATGGTTA
AGGAGATACCTGCTGAAGTTGTCTTCTCAGACTCAGCACAGAAGAAGGAG
GGACACGGTTTAGACATAAAAACCAGAGAGCAACACATGGGAACAGCGTT
TGCGGAGGCATTCTTTGCTCCAACTGATGGAATGGGAAAACGATGTGAAT
TGGGAGAGAAGGAAACAGGAGATTTTGGATACCGTTTCTCTATTGTGAAC
TACGGGTAA
back to top