Ggra1136.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1136.t1
Unique Name	Ggra1136.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	654

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000140_pilon	contig	tig00000140_pilon:54943..56904 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	8010.XP_010865796.1
PFAMs	AIG1
Max annot lvl	33208\|Metazoa
Evalue	1.36e-09
EggNOG OGs	290TZ@1\|root,2RB0C@2759\|Eukaryota,39XIN@33154\|Opisthokonta,3BBZ7@33208\|Metazoa,3DFB8@33213\|Bilateria,48HFS@7711\|Chordata,49E4M@7742\|Vertebrata,4A6W0@7898\|Actinopterygii
Description	GTPase IMAP family member 8-like
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1136	Ggra1136	Gracilaria gracilis GNS1m male	gene	tig00000140_pilon 54943..56904 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1136.t1.stop1	Ggra1136.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000140_pilon 54943..54945 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1136.t1.CDS1	Ggra1136.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000140_pilon 54943..56904 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1136.t1.exon1	Ggra1136.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000140_pilon 54943..56904 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1136.t1.start1	Ggra1136.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000140_pilon 56902..56904 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1136.t1	Ggra1136.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000140_pilon 54943..56904 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000140_pilon:54943..56904-
coding sequence from alignment at tig00000140_pilon:54943..56904-

mRNA sequence

>Ggra1136.t1 ID=Ggra1136.t1|Name=Ggra1136.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=654bp
MSCSIAKNGPTSELLSSLSSLCLNSPIVSDGIWNDLKKDTAEDSSPRKVD
LKQWSSKPQLQDQDSRSYRAAWLCLDFLYSIVAADDEKAFIMAKLVVEEN
HAPTKSESTSVLGACSLALNYDPSENVGAHTEQYEQQYSLVQTFVKDLSE
LSKDIPCAQSDWKWQFVLDVTVNHDHEKPTSKVDANEIACIAIITAHILL
KVIDVPHELSFVKMITGTHYSTPVLNNAVTRIFANWPDVPPDNLSKVRAL
VDEFEAKNANADQIVKEVSLLTIGTETCNILLIGRTGSGKSHTGNWILEN
LCSNSERRFLESSSGSMTSNVERLPVRNSWISVWDTPGLDDSHGQDGKYL
DEIRSIIMEIGTIHAVIICFETAHRIDARTQANIATYKRIVGPEMANHIM
LVVNQQPIALRRTQKKSLINAMRKHASLDVPDSHVYDLGPHADNLGDIRE
EALKTLKKLCEGKPFKASYFDRLQKGLLEIENLRDPEEFRKAQDILVHLS
EEALVRKLQHPSRQYPLHVQKTRKNAIYLSDGFPRRLNDGEKRYVTHVLH
MPDTVMKSFLLRTWEALLRMRRKPNVSFVRDLARKERLVFLELPADERQE
PKNGLIWRSCKLHYQMWDIESALTNDMKANLRKAIGDDFKRTVSAFQSLR
EES*

spliced messenger RNA

>Ggra1136.t1 ID=Ggra1136.t1|Name=Ggra1136.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1962bp|location=Sequence derived from alignment at tig00000140_pilon:54943..56904- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTGTAGCATTGCCAAGAACGGACCCACTTCCGAGCTTCTGTCGAG
CTTGAGCTCTCTTTGCCTCAACTCACCCATAGTTTCAGATGGGATATGGA
ATGATCTCAAGAAAGACACAGCTGAGGACAGTTCTCCACGCAAAGTGGAT
TTGAAACAATGGAGCTCCAAGCCCCAGCTTCAGGACCAAGATTCTAGATC
TTATCGAGCAGCTTGGCTATGTCTCGACTTCTTATATAGCATTGTCGCCG
CTGACGATGAGAAAGCTTTCATAATGGCAAAGTTAGTTGTCGAAGAGAAT
CACGCCCCCACAAAATCAGAAAGTACGTCTGTCCTCGGCGCCTGCAGCCT
CGCTCTCAATTATGACCCATCTGAGAATGTTGGGGCACATACGGAACAAT
ATGAGCAGCAGTATTCTCTTGTTCAGACCTTCGTAAAGGATCTCAGCGAG
CTCTCTAAGGATATCCCATGTGCACAATCGGACTGGAAGTGGCAATTTGT
TCTCGATGTGACCGTCAACCATGACCATGAAAAACCAACGTCGAAGGTCG
ATGCAAATGAAATCGCATGTATTGCTATCATTACCGCCCATATCCTTCTC
AAAGTAATCGATGTCCCGCATGAGCTTTCATTCGTCAAAATGATCACCGG
CACGCACTATTCCACTCCTGTTTTAAACAATGCAGTCACTCGCATTTTCG
CGAATTGGCCAGATGTTCCGCCAGACAACCTTTCTAAAGTGAGGGCGCTC
GTTGATGAGTTTGAAGCCAAAAACGCTAATGCGGACCAGATTGTGAAAGA
GGTAAGTCTTCTTACAATTGGTACCGAAACATGCAACATTCTCCTCATCG
GTCGCACAGGCTCAGGAAAGTCGCACACCGGCAACTGGATTCTTGAAAAC
TTATGTTCGAATTCCGAGAGGCGCTTCCTGGAAAGCAGTTCCGGCTCTAT
GACGAGCAATGTGGAGCGTCTTCCAGTGAGGAATTCTTGGATTTCCGTCT
GGGACACTCCAGGTCTAGATGATTCTCACGGGCAAGATGGCAAATATTTG
GATGAAATTAGAAGCATAATTATGGAGATCGGAACGATCCATGCAGTGAT
CATCTGTTTTGAAACTGCCCATCGAATAGACGCCCGAACACAGGCGAATA
TCGCCACGTACAAGCGCATAGTTGGCCCTGAGATGGCCAATCACATCATG
CTTGTTGTTAATCAGCAACCGATAGCTCTACGACGGACACAAAAGAAGTC
ATTGATAAATGCTATGAGAAAGCATGCGTCTCTCGATGTTCCTGATTCCC
ACGTTTATGACCTTGGTCCACACGCAGATAATCTTGGAGATATCCGTGAA
GAGGCGTTGAAAACGCTGAAGAAGCTATGCGAAGGAAAGCCATTTAAGGC
CAGTTATTTTGACAGATTGCAAAAGGGACTGCTCGAGATTGAAAATTTGA
GAGACCCCGAAGAATTCCGGAAAGCTCAAGACATCCTTGTACATCTTTCC
GAGGAAGCGCTTGTGAGGAAGTTACAGCATCCTAGTAGACAGTATCCTCT
TCATGTTCAAAAAACTCGTAAGAATGCAATATACCTGAGTGATGGGTTTC
CACGCAGGCTGAATGATGGCGAAAAGCGATATGTGACGCACGTTCTCCAT
ATGCCAGATACAGTCATGAAATCTTTTCTTCTTCGCACATGGGAAGCACT
GCTACGAATGCGAAGAAAGCCAAATGTGTCGTTTGTTAGGGATCTTGCAC
GGAAAGAACGTCTGGTGTTTTTGGAGTTACCAGCGGATGAGCGACAAGAG
CCAAAGAACGGTTTGATTTGGAGGTCATGCAAACTTCATTATCAAATGTG
GGACATAGAATCTGCGCTAACAAATGATATGAAGGCAAACTTGCGAAAGG
CGATAGGAGATGATTTCAAACGCACAGTGTCCGCATTTCAGTCTCTCCGC
GAAGAGTCCTAG

protein sequence of Ggra1136.t1

>Ggra1136.t1 ID=Ggra1136.t1|Name=Ggra1136.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=654bp
MSCSIAKNGPTSELLSSLSSLCLNSPIVSDGIWNDLKKDTAEDSSPRKVD
LKQWSSKPQLQDQDSRSYRAAWLCLDFLYSIVAADDEKAFIMAKLVVEEN
HAPTKSESTSVLGACSLALNYDPSENVGAHTEQYEQQYSLVQTFVKDLSE
LSKDIPCAQSDWKWQFVLDVTVNHDHEKPTSKVDANEIACIAIITAHILL
KVIDVPHELSFVKMITGTHYSTPVLNNAVTRIFANWPDVPPDNLSKVRAL
VDEFEAKNANADQIVKEVSLLTIGTETCNILLIGRTGSGKSHTGNWILEN
LCSNSERRFLESSSGSMTSNVERLPVRNSWISVWDTPGLDDSHGQDGKYL
DEIRSIIMEIGTIHAVIICFETAHRIDARTQANIATYKRIVGPEMANHIM
LVVNQQPIALRRTQKKSLINAMRKHASLDVPDSHVYDLGPHADNLGDIRE
EALKTLKKLCEGKPFKASYFDRLQKGLLEIENLRDPEEFRKAQDILVHLS
EEALVRKLQHPSRQYPLHVQKTRKNAIYLSDGFPRRLNDGEKRYVTHVLH
MPDTVMKSFLLRTWEALLRMRRKPNVSFVRDLARKERLVFLELPADERQE
PKNGLIWRSCKLHYQMWDIESALTNDMKANLRKAIGDDFKRTVSAFQSLR
EES*

mRNA from alignment at tig00000140_pilon:54943..56904-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1136.t1 ID=Ggra1136.t1|Name=Ggra1136.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1962bp|location=Sequence derived from alignment at tig00000140_pilon:54943..56904- (Gracilaria gracilis GNS1m male)
ATGTCGTGTAGCATTGCCAAGAACGGACCCACTTCCGAGCTTCTGTCGAG
CTTGAGCTCTCTTTGCCTCAACTCACCCATAGTTTCAGATGGGATATGGA
ATGATCTCAAGAAAGACACAGCTGAGGACAGTTCTCCACGCAAAGTGGAT
TTGAAACAATGGAGCTCCAAGCCCCAGCTTCAGGACCAAGATTCTAGATC
TTATCGAGCAGCTTGGCTATGTCTCGACTTCTTATATAGCATTGTCGCCG
CTGACGATGAGAAAGCTTTCATAATGGCAAAGTTAGTTGTCGAAGAGAAT
CACGCCCCCACAAAATCAGAAAGTACGTCTGTCCTCGGCGCCTGCAGCCT
CGCTCTCAATTATGACCCATCTGAGAATGTTGGGGCACATACGGAACAAT
ATGAGCAGCAGTATTCTCTTGTTCAGACCTTCGTAAAGGATCTCAGCGAG
CTCTCTAAGGATATCCCATGTGCACAATCGGACTGGAAGTGGCAATTTGT
TCTCGATGTGACCGTCAACCATGACCATGAAAAACCAACGTCGAAGGTCG
ATGCAAATGAAATCGCATGTATTGCTATCATTACCGCCCATATCCTTCTC
AAAGTAATCGATGTCCCGCATGAGCTTTCATTCGTCAAAATGATCACCGG
CACGCACTATTCCACTCCTGTTTTAAACAATGCAGTCACTCGCATTTTCG
CGAATTGGCCAGATGTTCCGCCAGACAACCTTTCTAAAGTGAGGGCGCTC
GTTGATGAGTTTGAAGCCAAAAACGCTAATGCGGACCAGATTGTGAAAGA
GGTAAGTCTTCTTACAATTGGTACCGAAACATGCAACATTCTCCTCATCG
GTCGCACAGGCTCAGGAAAGTCGCACACCGGCAACTGGATTCTTGAAAAC
TTATGTTCGAATTCCGAGAGGCGCTTCCTGGAAAGCAGTTCCGGCTCTAT
GACGAGCAATGTGGAGCGTCTTCCAGTGAGGAATTCTTGGATTTCCGTCT
GGGACACTCCAGGTCTAGATGATTCTCACGGGCAAGATGGCAAATATTTG
GATGAAATTAGAAGCATAATTATGGAGATCGGAACGATCCATGCAGTGAT
CATCTGTTTTGAAACTGCCCATCGAATAGACGCCCGAACACAGGCGAATA
TCGCCACGTACAAGCGCATAGTTGGCCCTGAGATGGCCAATCACATCATG
CTTGTTGTTAATCAGCAACCGATAGCTCTACGACGGACACAAAAGAAGTC
ATTGATAAATGCTATGAGAAAGCATGCGTCTCTCGATGTTCCTGATTCCC
ACGTTTATGACCTTGGTCCACACGCAGATAATCTTGGAGATATCCGTGAA
GAGGCGTTGAAAACGCTGAAGAAGCTATGCGAAGGAAAGCCATTTAAGGC
CAGTTATTTTGACAGATTGCAAAAGGGACTGCTCGAGATTGAAAATTTGA
GAGACCCCGAAGAATTCCGGAAAGCTCAAGACATCCTTGTACATCTTTCC
GAGGAAGCGCTTGTGAGGAAGTTACAGCATCCTAGTAGACAGTATCCTCT
TCATGTTCAAAAAACTCGTAAGAATGCAATATACCTGAGTGATGGGTTTC
CACGCAGGCTGAATGATGGCGAAAAGCGATATGTGACGCACGTTCTCCAT
ATGCCAGATACAGTCATGAAATCTTTTCTTCTTCGCACATGGGAAGCACT
GCTACGAATGCGAAGAAAGCCAAATGTGTCGTTTGTTAGGGATCTTGCAC
GGAAAGAACGTCTGGTGTTTTTGGAGTTACCAGCGGATGAGCGACAAGAG
CCAAAGAACGGTTTGATTTGGAGGTCATGCAAACTTCATTATCAAATGTG
GGACATAGAATCTGCGCTAACAAATGATATGAAGGCAAACTTGCGAAAGG
CGATAGGAGATGATTTCAAACGCACAGTGTCCGCATTTCAGTCTCTCCGC
GAAGAGTCCTAG

Coding sequence (CDS) from alignment at tig00000140_pilon:54943..56904-

>Ggra1136.t1 ID=Ggra1136.t1|Name=Ggra1136.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1962bp|location=Sequence derived from alignment at tig00000140_pilon:54943..56904- (Gracilaria gracilis GNS1m male)
ATGTCGTGTAGCATTGCCAAGAACGGACCCACTTCCGAGCTTCTGTCGAG
CTTGAGCTCTCTTTGCCTCAACTCACCCATAGTTTCAGATGGGATATGGA
ATGATCTCAAGAAAGACACAGCTGAGGACAGTTCTCCACGCAAAGTGGAT
TTGAAACAATGGAGCTCCAAGCCCCAGCTTCAGGACCAAGATTCTAGATC
TTATCGAGCAGCTTGGCTATGTCTCGACTTCTTATATAGCATTGTCGCCG
CTGACGATGAGAAAGCTTTCATAATGGCAAAGTTAGTTGTCGAAGAGAAT
CACGCCCCCACAAAATCAGAAAGTACGTCTGTCCTCGGCGCCTGCAGCCT
CGCTCTCAATTATGACCCATCTGAGAATGTTGGGGCACATACGGAACAAT
ATGAGCAGCAGTATTCTCTTGTTCAGACCTTCGTAAAGGATCTCAGCGAG
CTCTCTAAGGATATCCCATGTGCACAATCGGACTGGAAGTGGCAATTTGT
TCTCGATGTGACCGTCAACCATGACCATGAAAAACCAACGTCGAAGGTCG
ATGCAAATGAAATCGCATGTATTGCTATCATTACCGCCCATATCCTTCTC
AAAGTAATCGATGTCCCGCATGAGCTTTCATTCGTCAAAATGATCACCGG
CACGCACTATTCCACTCCTGTTTTAAACAATGCAGTCACTCGCATTTTCG
CGAATTGGCCAGATGTTCCGCCAGACAACCTTTCTAAAGTGAGGGCGCTC
GTTGATGAGTTTGAAGCCAAAAACGCTAATGCGGACCAGATTGTGAAAGA
GGTAAGTCTTCTTACAATTGGTACCGAAACATGCAACATTCTCCTCATCG
GTCGCACAGGCTCAGGAAAGTCGCACACCGGCAACTGGATTCTTGAAAAC
TTATGTTCGAATTCCGAGAGGCGCTTCCTGGAAAGCAGTTCCGGCTCTAT
GACGAGCAATGTGGAGCGTCTTCCAGTGAGGAATTCTTGGATTTCCGTCT
GGGACACTCCAGGTCTAGATGATTCTCACGGGCAAGATGGCAAATATTTG
GATGAAATTAGAAGCATAATTATGGAGATCGGAACGATCCATGCAGTGAT
CATCTGTTTTGAAACTGCCCATCGAATAGACGCCCGAACACAGGCGAATA
TCGCCACGTACAAGCGCATAGTTGGCCCTGAGATGGCCAATCACATCATG
CTTGTTGTTAATCAGCAACCGATAGCTCTACGACGGACACAAAAGAAGTC
ATTGATAAATGCTATGAGAAAGCATGCGTCTCTCGATGTTCCTGATTCCC
ACGTTTATGACCTTGGTCCACACGCAGATAATCTTGGAGATATCCGTGAA
GAGGCGTTGAAAACGCTGAAGAAGCTATGCGAAGGAAAGCCATTTAAGGC
CAGTTATTTTGACAGATTGCAAAAGGGACTGCTCGAGATTGAAAATTTGA
GAGACCCCGAAGAATTCCGGAAAGCTCAAGACATCCTTGTACATCTTTCC
GAGGAAGCGCTTGTGAGGAAGTTACAGCATCCTAGTAGACAGTATCCTCT
TCATGTTCAAAAAACTCGTAAGAATGCAATATACCTGAGTGATGGGTTTC
CACGCAGGCTGAATGATGGCGAAAAGCGATATGTGACGCACGTTCTCCAT
ATGCCAGATACAGTCATGAAATCTTTTCTTCTTCGCACATGGGAAGCACT
GCTACGAATGCGAAGAAAGCCAAATGTGTCGTTTGTTAGGGATCTTGCAC
GGAAAGAACGTCTGGTGTTTTTGGAGTTACCAGCGGATGAGCGACAAGAG
CCAAAGAACGGTTTGATTTGGAGGTCATGCAAACTTCATTATCAAATGTG
GGACATAGAATCTGCGCTAACAAATGATATGAAGGCAAACTTGCGAAAGG
CGATAGGAGATGATTTCAAACGCACAGTGTCCGCATTTCAGTCTCTCCGC
GAAGAGTCCTAG