Ggra1133.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1133.t1
Unique NameGgra1133.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length279
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000140_piloncontigtig00000140_pilon:28626..29546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1133Ggra1133Gracilaria gracilis GNS1m malegenetig00000140_pilon 28626..29546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1133.t1Ggra1133.t1Gracilaria gracilis GNS1m malepolypeptidetig00000140_pilon 28626..29546 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1133.t1.stop1Ggra1133.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000140_pilon 28626..28628 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1133.t1.CDS1Ggra1133.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000140_pilon 28626..28928 -
Ggra1133.t1.CDS2Ggra1133.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000140_pilon 29013..29546 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1133.t1.exon1Ggra1133.t1.exon1Gracilaria gracilis GNS1m maleexontig00000140_pilon 28626..28928 -
Ggra1133.t1.exon2Ggra1133.t1.exon2Gracilaria gracilis GNS1m maleexontig00000140_pilon 29013..29546 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1133.t1.intron1Ggra1133.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000140_pilon 28929..29012 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1133.t1.start1Ggra1133.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000140_pilon 29544..29546 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1133.t1 ID=Ggra1133.t1|Name=Ggra1133.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=279bp
MEEDCVKQLTNDICLRKRLKQALSDGMGVPKRHAKEKLLMGLGYDLIVRA
PRKNSEKQLEKYEQQAREVREKLLPRDGNGCEIISSWRTQRVEDICFSGF
ETSKATEDEPRDLLFRNSLSLQVLREFLGYEIFQKSSRKAEVRDPVDGTT
MHLARLDAWIASVVRATESERERGGKRQRYRSEFRNTPSSAEDRQPRNDE
RVGTVAYWMPSKLKLYLAVREDVFMEEITEHLGAALDCYVRCCSREDRMF
YEITAEKDGRERSPEDGVDEENEMERED*
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spliced messenger RNA

>Ggra1133.t1 ID=Ggra1133.t1|Name=Ggra1133.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000140_pilon:28626..29546- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGAGGATTGTGTGAAACAATTAACCAATGACATCTGTTTGCGAAA
GAGATTGAAACAGGCACTAAGTGATGGAATGGGTGTTCCAAAACGGCATG
CGAAGGAGAAGTTGCTCATGGGACTAGGTTATGACTTGATCGTGAGGGCA
CCGAGAAAGAATAGTGAAAAGCAACTGGAGAAATACGAGCAGCAAGCCAG
AGAGGTACGCGAGAAGCTGCTACCAAGAGATGGAAACGGATGTGAGATTA
TCTCGTCATGGAGAACTCAGAGAGTAGAGGATATATGTTTCTCTGGATTT
GAAACAAGCAAGGCAACAGAGGATGAACCACGTGACTTGTTGTTTAGGAA
CAGCCTGAGCTTGCAGGTACTACGGGAGTTTCTGGGATACGAGATATTCC
AAAAGAGTTCGAGGAAAGCGGAGGTGAGGGATCCAGTGGATGGAACAACT
ATGCATCTAGCGCGTCTAGATGCATGGATAGCGAGTGTCGTTCGGGCGAC
AGAGTCTGAACGAGAGAGAGGCGGTAAGAGGCAGAGGTATCGATCGGAGT
TCAGGAACACCCCATCGAGTGCTGAGGATCGGCAGCCTAGAAATGATGAA
CGCGTGGGCACTGTGGCCTATTGGATGCCCTCGAAATTGAAATTGTACCT
TGCCGTCCGAGAAGATGTGTTCATGGAAGAGATTACTGAGCATCTTGGAG
CTGCACTGGATTGCTATGTTAGATGCTGTAGTCGGGAGGACCGTATGTTC
TACGAGATAACAGCAGAGAAAGATGGAAGGGAACGCTCTCCGGAAGACGG
AGTGGATGAAGAGAATGAGATGGAGAGGGAGGACTAG
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protein sequence of Ggra1133.t1

>Ggra1133.t1 ID=Ggra1133.t1|Name=Ggra1133.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=279bp
MEEDCVKQLTNDICLRKRLKQALSDGMGVPKRHAKEKLLMGLGYDLIVRA
PRKNSEKQLEKYEQQAREVREKLLPRDGNGCEIISSWRTQRVEDICFSGF
ETSKATEDEPRDLLFRNSLSLQVLREFLGYEIFQKSSRKAEVRDPVDGTT
MHLARLDAWIASVVRATESERERGGKRQRYRSEFRNTPSSAEDRQPRNDE
RVGTVAYWMPSKLKLYLAVREDVFMEEITEHLGAALDCYVRCCSREDRMF
YEITAEKDGRERSPEDGVDEENEMERED*
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mRNA from alignment at tig00000140_pilon:28626..29546-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1133.t1 ID=Ggra1133.t1|Name=Ggra1133.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000140_pilon:28626..29546- (Gracilaria gracilis GNS1m male)
ATGGAGGAGGATTGTGTGAAACAATTAACCAATGACATCTGTTTGCGAAA
GAGATTGAAACAGGCACTAAGTGATGGAATGGGTGTTCCAAAACGGCATG
CGAAGGAGAAGTTGCTCATGGGACTAGGTTATGACTTGATCGTGAGGGCA
CCGAGAAAGAATAGTGAAAAGCAACTGGAGAAATACGAGCAGCAAGCCAG
AGAGGTACGCGAGAAGCTGCTACCAAGAGATGGAAACGGATGTGAGATTA
TCTCGTCATGGAGAACTCAGAGAGTAGAGGATATATGTTTCTCTGGATTT
GAAACAAGCAAGGCAACAGAGGATGAACCACGTGACTTGTTGTTTAGGAA
CAGCCTGAGCTTGCAGGTACTACGGGAGTTTCTGGGATACGAGATATTCC
AAAAGAGTTCGAGGAAAGCGGAGGTGAGGGATCCAGTGGATGGAACAACT
ATGCATCTAGCGCGTCTAGATGCATGGATAGCGAGTGTCGTTCGGGCGAC
AGAGTCTGAACGAGAGAGAGGCGGTAAGAGGCAGGTATTGTTCTCTAACT
TATTCGGAAAATACCTGCAACTGGCATTAGAGAGTATAATAGGGACTGTG
TGATCCCATATGCCACAGAGGTATCGATCGGAGTTCAGGAACACCCCATC
GAGTGCTGAGGATCGGCAGCCTAGAAATGATGAACGCGTGGGCACTGTGG
CCTATTGGATGCCCTCGAAATTGAAATTGTACCTTGCCGTCCGAGAAGAT
GTGTTCATGGAAGAGATTACTGAGCATCTTGGAGCTGCACTGGATTGCTA
TGTTAGATGCTGTAGTCGGGAGGACCGTATGTTCTACGAGATAACAGCAG
AGAAAGATGGAAGGGAACGCTCTCCGGAAGACGGAGTGGATGAAGAGAAT
GAGATGGAGAGGGAGGACTAG
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Coding sequence (CDS) from alignment at tig00000140_pilon:28626..29546-

>Ggra1133.t1 ID=Ggra1133.t1|Name=Ggra1133.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00000140_pilon:28626..29546- (Gracilaria gracilis GNS1m male)
ATGGAGGAGGATTGTGTGAAACAATTAACCAATGACATCTGTTTGCGAAA
GAGATTGAAACAGGCACTAAGTGATGGAATGGGTGTTCCAAAACGGCATG
CGAAGGAGAAGTTGCTCATGGGACTAGGTTATGACTTGATCGTGAGGGCA
CCGAGAAAGAATAGTGAAAAGCAACTGGAGAAATACGAGCAGCAAGCCAG
AGAGGTACGCGAGAAGCTGCTACCAAGAGATGGAAACGGATGTGAGATTA
TCTCGTCATGGAGAACTCAGAGAGTAGAGGATATATGTTTCTCTGGATTT
GAAACAAGCAAGGCAACAGAGGATGAACCACGTGACTTGTTGTTTAGGAA
CAGCCTGAGCTTGCAGGTACTACGGGAGTTTCTGGGATACGAGATATTCC
AAAAGAGTTCGAGGAAAGCGGAGGTGAGGGATCCAGTGGATGGAACAACT
ATGCATCTAGCGCGTCTAGATGCATGGATAGCGAGTGTCGTTCGGGCGAC
AGAGTCTGAACGAGAGAGAGGCGGTAAGAGGCAGAGGTATCGATCGGAGT
TCAGGAACACCCCATCGAGTGCTGAGGATCGGCAGCCTAGAAATGATGAA
CGCGTGGGCACTGTGGCCTATTGGATGCCCTCGAAATTGAAATTGTACCT
TGCCGTCCGAGAAGATGTGTTCATGGAAGAGATTACTGAGCATCTTGGAG
CTGCACTGGATTGCTATGTTAGATGCTGTAGTCGGGAGGACCGTATGTTC
TACGAGATAACAGCAGAGAAAGATGGAAGGGAACGCTCTCCGGAAGACGG
AGTGGATGAAGAGAATGAGATGGAGAGGGAGGACTAG
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