Ggra1132.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1132.t1
Unique NameGgra1132.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000140_piloncontigtig00000140_pilon:4737..6161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog51453.EGR52193
Preferred nameTGL3
PFAMsDUF3336,Patatin
Max annot lvl4751|Fungi
KEGG rclassRC00020,RC00037,RC00041,RC00094
KEGG koko:K14675
KEGG ReactionR02250,R02687
KEGG Pathwayko00561,ko01100,map00561,map01100
KEGG ModuleM00098
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004806,GO:0005575,GO:0005622,GO:0005623,GO:0005811,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006642,GO:0007114,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016042,GO:0016298,GO:0016740,GO:0016746,GO:0016747,GO:0016787,GO:0016788,GO:0019433,GO:0019954,GO:0032505,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044424,GO:0044464,GO:0046461,GO:0046464,GO:0046486,GO:0046503,GO:0051301,GO:0052689,GO:0071617,GO:0071618,GO:0071704,GO:1901575
Evalue1.06e-14
EggNOG OGsCOG1752@1|root,KOG2214@2759|Eukaryota,38H5V@33154|Opisthokonta,3NWZF@4751|Fungi,3QKNM@4890|Ascomycota,211MW@147550|Sordariomycetes,3TFN2@5125|Hypocreales,3U1T9@5129|Hypocreaceae
EC3.1.1.3
DescriptionDomain of unknown function (DUF3336)
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1132Ggra1132Gracilaria gracilis GNS1m malegenetig00000140_pilon 4737..6161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1132.t1Ggra1132.t1Gracilaria gracilis GNS1m malepolypeptidetig00000140_pilon 4737..6161 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1132.t1.start1Ggra1132.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000140_pilon 4737..4739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1132.t1.CDS1Ggra1132.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000140_pilon 4737..4964 +
Ggra1132.t1.CDS2Ggra1132.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000140_pilon 5048..5230 +
Ggra1132.t1.CDS3Ggra1132.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000140_pilon 5337..6161 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1132.t1.exon1Ggra1132.t1.exon1Gracilaria gracilis GNS1m maleexontig00000140_pilon 4737..4964 +
Ggra1132.t1.exon2Ggra1132.t1.exon2Gracilaria gracilis GNS1m maleexontig00000140_pilon 5048..5230 +
Ggra1132.t1.exon3Ggra1132.t1.exon3Gracilaria gracilis GNS1m maleexontig00000140_pilon 5337..6161 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1132.t1.intron1Ggra1132.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000140_pilon 4965..5047 +
Ggra1132.t1.intron2Ggra1132.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000140_pilon 5231..5336 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1132.t1.stop1Ggra1132.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000140_pilon 6159..6161 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1132.t1 ID=Ggra1132.t1|Name=Ggra1132.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=412bp
MLSGGAIMSIHYIGVVKALFLQGLLPKVVCGTSAGACAAAIVAVSNDNEL
EEVLRNDALLNPFAGQTLSFKYFDDHKFSAITFEEAYNKTHRILNMTVCA
SRSFSDPPILNPKCCTVRDEHGNRTFVSYGYTTMVPWQLWPERLNHNPSH
VKAWCNLGVLHRNAGNPVLAMRAYEKVLSCNPDYERAKSNLAVALCEKGT
DIKHVDPKLYKRALALQPCFSDAHYNLGVLYAETGEFERALLSYNLAVQA
NPRLTEAHNDLGVVHKARECYKRALQCECQHHQNHINIAVVHTLLGDIDS
ATEHLRNANAISPNYAEAYNNIAVVLRDQGDIDPALNHYEQCYKIDPFAD
MATQNRLHALNYSEKWSKARVHEEHVAWGAAFPKRIDDEIVQASAKIQRE
VDSILYPILSI*
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spliced messenger RNA

>Ggra1132.t1 ID=Ggra1132.t1|Name=Ggra1132.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000140_pilon:4737..6161+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCCGGCGGGGCCATTATGAGCATTCATTACATCGGTGTTGTTAA
GGCTCTGTTTTTACAAGGCCTGCTGCCCAAAGTGGTTTGTGGCACATCTG
CCGGCGCCTGTGCGGCTGCAATTGTGGCCGTTTCTAATGACAATGAGTTG
GAAGAAGTTCTCAGGAATGACGCACTTCTCAATCCGTTCGCAGGACAGAC
TTTGAGCTTCAAGTACTTTGATGATCATAAATTTAGCGCCATTACGTTTG
AAGAGGCGTACAACAAAACGCACCGTATTCTGAATATGACTGTGTGTGCG
TCGCGCAGCTTTTCGGACCCGCCTATTCTCAATCCAAAATGTTGCACAGT
CCGTGACGAGCACGGAAACCGAACCTTTGTCTCTTATGGGTACACTACCA
TGGTGCCATGGCAACTTTGGCCTGAACGTCTGAACCACAACCCCTCGCAC
GTCAAAGCATGGTGCAATCTCGGAGTGCTGCACAGAAACGCCGGAAACCC
CGTTCTTGCCATGCGTGCTTACGAGAAGGTGCTTTCTTGTAATCCTGACT
ACGAACGGGCCAAAAGTAACCTCGCCGTCGCTCTCTGCGAAAAGGGCACT
GACATCAAGCATGTTGACCCCAAACTTTATAAGCGCGCCCTTGCTCTCCA
GCCATGCTTTTCCGATGCTCACTACAATCTTGGCGTTCTCTACGCTGAAA
CTGGAGAGTTTGAACGTGCCCTTCTTTCGTACAATCTCGCTGTTCAAGCT
AACCCACGTCTAACTGAGGCTCATAACGATCTAGGAGTTGTGCACAAAGC
GCGTGAATGTTACAAACGTGCCTTGCAATGTGAATGCCAGCATCATCAGA
ACCACATCAATATTGCCGTCGTCCACACACTTTTGGGTGATATCGATTCT
GCCACCGAACACTTGCGCAATGCCAATGCCATATCGCCAAATTACGCCGA
AGCATACAACAACATTGCCGTTGTCTTAAGAGATCAAGGTGATATTGACC
CCGCACTGAACCATTACGAACAATGCTACAAGATCGATCCATTTGCGGAC
ATGGCCACCCAGAACCGCCTACATGCTCTTAACTATAGTGAAAAGTGGAG
CAAAGCACGGGTCCACGAAGAACATGTAGCGTGGGGCGCGGCCTTTCCAA
AGCGCATTGATGACGAAATAGTCCAAGCTTCCGCAAAGATACAGAGAGAA
GTAGACAGTATTCTTTATCCAATACTATCAATATAA
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protein sequence of Ggra1132.t1

>Ggra1132.t1 ID=Ggra1132.t1|Name=Ggra1132.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=412bp
MLSGGAIMSIHYIGVVKALFLQGLLPKVVCGTSAGACAAAIVAVSNDNEL
EEVLRNDALLNPFAGQTLSFKYFDDHKFSAITFEEAYNKTHRILNMTVCA
SRSFSDPPILNPKCCTVRDEHGNRTFVSYGYTTMVPWQLWPERLNHNPSH
VKAWCNLGVLHRNAGNPVLAMRAYEKVLSCNPDYERAKSNLAVALCEKGT
DIKHVDPKLYKRALALQPCFSDAHYNLGVLYAETGEFERALLSYNLAVQA
NPRLTEAHNDLGVVHKARECYKRALQCECQHHQNHINIAVVHTLLGDIDS
ATEHLRNANAISPNYAEAYNNIAVVLRDQGDIDPALNHYEQCYKIDPFAD
MATQNRLHALNYSEKWSKARVHEEHVAWGAAFPKRIDDEIVQASAKIQRE
VDSILYPILSI*
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mRNA from alignment at tig00000140_pilon:4737..6161+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1132.t1 ID=Ggra1132.t1|Name=Ggra1132.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1425bp|location=Sequence derived from alignment at tig00000140_pilon:4737..6161+ (Gracilaria gracilis GNS1m male)
ATGCTCTCCGGCGGGGCCATTATGAGCATTCATTACATCGGTGTTGTTAA
GGCTCTGTTTTTACAAGGCCTGCTGCCCAAAGTGGTTTGTGGCACATCTG
CCGGCGCCTGTGCGGCTGCAATTGTGGCCGTTTCTAATGACAATGAGTTG
GAAGAAGTTCTCAGGAATGACGCACTTCTCAATCCGTTCGCAGGACAGAC
TTTGAGCTTCAAGTACTTTGATGATCATGTGAGTTGGTTCAGAAGGTTAC
GCCGCTTTATCAGCAGGGCTTCATTCAAGATGTAAAGATGTTGTAAGATT
GTCTGCGAAAGAAATTTAGCGCCATTACGTTTGAAGAGGCGTACAACAAA
ACGCACCGTATTCTGAATATGACTGTGTGTGCGTCGCGCAGCTTTTCGGA
CCCGCCTATTCTCAATCCAAAATGTTGCACAGTCCGTGACGAGCACGGAA
ACCGAACCTTTGTCTCTTATGGGTACACTACCATGGTGCCATGGGTACGA
ATTCTGATAACTTACATGGATAACTAAAAGTGTTACGAACTACAGTAAGT
ACGGTTTTATACCCGTTATCCACGGGTAAACAGATTTGGGCACTTCCGAG
CAACTTTGGCCTGAACGTCTGAACCACAACCCCTCGCACGTCAAAGCATG
GTGCAATCTCGGAGTGCTGCACAGAAACGCCGGAAACCCCGTTCTTGCCA
TGCGTGCTTACGAGAAGGTGCTTTCTTGTAATCCTGACTACGAACGGGCC
AAAAGTAACCTCGCCGTCGCTCTCTGCGAAAAGGGCACTGACATCAAGCA
TGTTGACCCCAAACTTTATAAGCGCGCCCTTGCTCTCCAGCCATGCTTTT
CCGATGCTCACTACAATCTTGGCGTTCTCTACGCTGAAACTGGAGAGTTT
GAACGTGCCCTTCTTTCGTACAATCTCGCTGTTCAAGCTAACCCACGTCT
AACTGAGGCTCATAACGATCTAGGAGTTGTGCACAAAGCGCGTGAATGTT
ACAAACGTGCCTTGCAATGTGAATGCCAGCATCATCAGAACCACATCAAT
ATTGCCGTCGTCCACACACTTTTGGGTGATATCGATTCTGCCACCGAACA
CTTGCGCAATGCCAATGCCATATCGCCAAATTACGCCGAAGCATACAACA
ACATTGCCGTTGTCTTAAGAGATCAAGGTGATATTGACCCCGCACTGAAC
CATTACGAACAATGCTACAAGATCGATCCATTTGCGGACATGGCCACCCA
GAACCGCCTACATGCTCTTAACTATAGTGAAAAGTGGAGCAAAGCACGGG
TCCACGAAGAACATGTAGCGTGGGGCGCGGCCTTTCCAAAGCGCATTGAT
GACGAAATAGTCCAAGCTTCCGCAAAGATACAGAGAGAAGTAGACAGTAT
TCTTTATCCAATACTATCAATATAA
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Coding sequence (CDS) from alignment at tig00000140_pilon:4737..6161+

>Ggra1132.t1 ID=Ggra1132.t1|Name=Ggra1132.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1236bp|location=Sequence derived from alignment at tig00000140_pilon:4737..6161+ (Gracilaria gracilis GNS1m male)
ATGCTCTCCGGCGGGGCCATTATGAGCATTCATTACATCGGTGTTGTTAA
GGCTCTGTTTTTACAAGGCCTGCTGCCCAAAGTGGTTTGTGGCACATCTG
CCGGCGCCTGTGCGGCTGCAATTGTGGCCGTTTCTAATGACAATGAGTTG
GAAGAAGTTCTCAGGAATGACGCACTTCTCAATCCGTTCGCAGGACAGAC
TTTGAGCTTCAAGTACTTTGATGATCATAAATTTAGCGCCATTACGTTTG
AAGAGGCGTACAACAAAACGCACCGTATTCTGAATATGACTGTGTGTGCG
TCGCGCAGCTTTTCGGACCCGCCTATTCTCAATCCAAAATGTTGCACAGT
CCGTGACGAGCACGGAAACCGAACCTTTGTCTCTTATGGGTACACTACCA
TGGTGCCATGGCAACTTTGGCCTGAACGTCTGAACCACAACCCCTCGCAC
GTCAAAGCATGGTGCAATCTCGGAGTGCTGCACAGAAACGCCGGAAACCC
CGTTCTTGCCATGCGTGCTTACGAGAAGGTGCTTTCTTGTAATCCTGACT
ACGAACGGGCCAAAAGTAACCTCGCCGTCGCTCTCTGCGAAAAGGGCACT
GACATCAAGCATGTTGACCCCAAACTTTATAAGCGCGCCCTTGCTCTCCA
GCCATGCTTTTCCGATGCTCACTACAATCTTGGCGTTCTCTACGCTGAAA
CTGGAGAGTTTGAACGTGCCCTTCTTTCGTACAATCTCGCTGTTCAAGCT
AACCCACGTCTAACTGAGGCTCATAACGATCTAGGAGTTGTGCACAAAGC
GCGTGAATGTTACAAACGTGCCTTGCAATGTGAATGCCAGCATCATCAGA
ACCACATCAATATTGCCGTCGTCCACACACTTTTGGGTGATATCGATTCT
GCCACCGAACACTTGCGCAATGCCAATGCCATATCGCCAAATTACGCCGA
AGCATACAACAACATTGCCGTTGTCTTAAGAGATCAAGGTGATATTGACC
CCGCACTGAACCATTACGAACAATGCTACAAGATCGATCCATTTGCGGAC
ATGGCCACCCAGAACCGCCTACATGCTCTTAACTATAGTGAAAAGTGGAG
CAAAGCACGGGTCCACGAAGAACATGTAGCGTGGGGCGCGGCCTTTCCAA
AGCGCATTGATGACGAAATAGTCCAAGCTTCCGCAAAGATACAGAGAGAA
GTAGACAGTATTCTTTATCCAATACTATCAATATAA
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