Ggra1131.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1131.t1
Unique NameGgra1131.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length471
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000140_piloncontigtig00000140_pilon:2920..4332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708504.1
Preferred nameTGL3
PFAMsDUF3336,Patatin
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00020,RC00037,RC00041,RC00055,RC00094,RC00523
KEGG koko:K14674,ko:K14675,ko:K21596
KEGG ReactionR01315,R01317,R01462,R02053,R02241,R02250,R02687,R07064,R07379,R07387,R07859
KEGG Pathwayko00100,ko00561,ko00564,ko00565,ko00590,ko00591,ko00592,ko01100,ko01110,map00100,map00561,map00564,map00565,map00590,map00591,map00592,map01100,map01110
KEGG ModuleM00089,M00098
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004620,GO:0004623,GO:0004771,GO:0004806,GO:0005575,GO:0005622,GO:0005623,GO:0005811,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006642,GO:0006644,GO:0006793,GO:0006796,GO:0007114,GO:0008150,GO:0008152,GO:0009056,GO:0009636,GO:0009987,GO:0012511,GO:0016042,GO:0016298,GO:0016740,GO:0016746,GO:0016747,GO:0016787,GO:0016788,GO:0019433,GO:0019637,GO:0019954,GO:0032505,GO:0042171,GO:0042221,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044424,GO:0044464,GO:0046461,GO:0046464,GO:0046486,GO:0046503,GO:0047499,GO:0050896,GO:0051301,GO:0051716,GO:0052689,GO:0070887,GO:0071617,GO:0071618,GO:0071704,GO:0097237,GO:0098754,GO:1901575,GO:1990748
Evalue1.03e-16
EggNOG OGsCOG1752@1|root,KOG2214@2759|Eukaryota
EC2.3.1.51,3.1.1.13,3.1.1.3,3.1.1.4
Descriptiontriglyceride mobilization
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1131Ggra1131Gracilaria gracilis GNS1m malegenetig00000140_pilon 2920..4332 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1131.t1.start1Ggra1131.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000140_pilon 2920..2922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1131.t1.CDS1Ggra1131.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000140_pilon 2920..4332 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1131.t1.exon1Ggra1131.t1.exon1Gracilaria gracilis GNS1m maleexontig00000140_pilon 2920..4332 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1131.t1.stop1Ggra1131.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000140_pilon 4330..4332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1131.t1Ggra1131.t1Gracilaria gracilis GNS1m malepolypeptidetig00000140_pilon 2920..4332 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1131.t1 ID=Ggra1131.t1|Name=Ggra1131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp
MRRYAPHHPTVQSSSAPNLTKPSRRRAQSNLPSLPAALRELFATPSSPLP
LPASQAHTPVDGVHAKSRLAALHRWLDLRPPFSLLPKNALRKFMRPEAVI
VRSHQLHTYCRVCYGNPSPTRTEDDIAATRSSWILDGDMWQLLVMLFFWL
LYVVIAIVRWLRRLQAAHRRKQLFRKQRAFLTDKLQTAPNYSAWHSDANE
VDMLEGRTEWKYSPQLAVDNLCDCCSQLWNSRTKLRERAVINAHANDGIN
RVCDTKMIAGKLRELAVLFNEGDVRGIAFALRAGMVRNLAETCHPEMHAH
SRVGTKLIAEDYVKDVSFLISYIAESEALPRITLFPSTSASPVIRHPAKE
PSNIVDKLLLGRGACTPEPAVVANDETEVKQNPQQVLQMASQRLENDITM
TANEDSGKPKQEEMKAASGDCNLEDQPCDGGTECCDMQQFYIKTYMDGGS
TCRFWWSLCEDSGARSKAAG*
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spliced messenger RNA

>Ggra1131.t1 ID=Ggra1131.t1|Name=Ggra1131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000140_pilon:2920..4332+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCGCTACGCGCCGCATCATCCCACCGTGCAGTCGTCGTCGGCGCC
CAACCTCACGAAGCCTTCTCGTCGACGCGCGCAGTCCAATCTTCCTAGTC
TGCCCGCCGCGTTGCGCGAGCTGTTCGCCACACCTAGTTCGCCGTTGCCG
CTTCCGGCTTCGCAGGCGCATACGCCCGTCGATGGTGTGCACGCCAAGTC
GCGGCTGGCCGCGCTTCATAGGTGGCTTGACCTGCGTCCGCCTTTTTCCT
TGTTGCCCAAAAATGCGCTCAGGAAGTTCATGCGACCAGAGGCCGTCATT
GTGAGAAGCCACCAGTTACATACATACTGCCGTGTCTGTTACGGGAATCC
GTCGCCGACGAGGACGGAGGACGACATCGCTGCAACTCGTTCTTCCTGGA
TTCTTGATGGTGACATGTGGCAGCTGTTGGTCATGCTGTTCTTCTGGCTG
CTTTACGTCGTCATTGCCATTGTGCGCTGGCTGCGTCGTCTCCAGGCAGC
ACATCGCCGAAAGCAGCTGTTTCGCAAACAGAGAGCGTTTCTAACTGACA
AGCTTCAAACCGCTCCTAATTACTCGGCGTGGCACTCTGACGCCAACGAG
GTAGATATGCTGGAGGGGCGCACCGAATGGAAGTATAGCCCCCAGCTGGC
CGTCGACAACCTGTGTGACTGTTGCAGCCAACTTTGGAACAGTCGAACCA
AGCTGCGAGAACGCGCCGTCATCAATGCGCACGCGAACGATGGCATCAAC
AGAGTGTGCGACACCAAAATGATTGCCGGCAAGCTACGGGAGCTTGCTGT
TCTGTTTAACGAAGGCGACGTGCGGGGAATCGCATTCGCACTACGCGCTG
GTATGGTGCGTAATCTCGCCGAAACGTGTCATCCTGAGATGCATGCTCAC
TCGCGCGTCGGTACAAAGCTTATCGCTGAAGACTATGTCAAAGACGTCTC
GTTTCTCATATCGTACATTGCTGAATCAGAGGCGCTGCCGCGCATCACGC
TCTTCCCCAGCACGTCTGCGTCACCGGTGATCCGGCATCCCGCGAAGGAA
CCTTCGAATATTGTGGATAAGCTTTTACTTGGGCGTGGCGCCTGTACGCC
AGAACCGGCAGTGGTGGCAAACGACGAAACTGAAGTGAAGCAGAACCCGC
AGCAAGTGCTGCAAATGGCCTCACAGAGATTGGAAAATGACATCACCATG
ACTGCCAATGAAGACTCGGGTAAGCCCAAGCAGGAAGAAATGAAGGCCGC
TTCCGGCGACTGTAATCTTGAAGATCAACCGTGCGACGGTGGTACGGAGT
GTTGCGATATGCAGCAATTCTACATCAAGACTTACATGGATGGCGGCTCC
ACATGTCGCTTTTGGTGGAGTCTTTGCGAAGATTCGGGAGCAAGATCAAA
GGCCGCAGGATAA
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protein sequence of Ggra1131.t1

>Ggra1131.t1 ID=Ggra1131.t1|Name=Ggra1131.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=471bp
MRRYAPHHPTVQSSSAPNLTKPSRRRAQSNLPSLPAALRELFATPSSPLP
LPASQAHTPVDGVHAKSRLAALHRWLDLRPPFSLLPKNALRKFMRPEAVI
VRSHQLHTYCRVCYGNPSPTRTEDDIAATRSSWILDGDMWQLLVMLFFWL
LYVVIAIVRWLRRLQAAHRRKQLFRKQRAFLTDKLQTAPNYSAWHSDANE
VDMLEGRTEWKYSPQLAVDNLCDCCSQLWNSRTKLRERAVINAHANDGIN
RVCDTKMIAGKLRELAVLFNEGDVRGIAFALRAGMVRNLAETCHPEMHAH
SRVGTKLIAEDYVKDVSFLISYIAESEALPRITLFPSTSASPVIRHPAKE
PSNIVDKLLLGRGACTPEPAVVANDETEVKQNPQQVLQMASQRLENDITM
TANEDSGKPKQEEMKAASGDCNLEDQPCDGGTECCDMQQFYIKTYMDGGS
TCRFWWSLCEDSGARSKAAG*
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mRNA from alignment at tig00000140_pilon:2920..4332+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1131.t1 ID=Ggra1131.t1|Name=Ggra1131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000140_pilon:2920..4332+ (Gracilaria gracilis GNS1m male)
ATGAGGCGCTACGCGCCGCATCATCCCACCGTGCAGTCGTCGTCGGCGCC
CAACCTCACGAAGCCTTCTCGTCGACGCGCGCAGTCCAATCTTCCTAGTC
TGCCCGCCGCGTTGCGCGAGCTGTTCGCCACACCTAGTTCGCCGTTGCCG
CTTCCGGCTTCGCAGGCGCATACGCCCGTCGATGGTGTGCACGCCAAGTC
GCGGCTGGCCGCGCTTCATAGGTGGCTTGACCTGCGTCCGCCTTTTTCCT
TGTTGCCCAAAAATGCGCTCAGGAAGTTCATGCGACCAGAGGCCGTCATT
GTGAGAAGCCACCAGTTACATACATACTGCCGTGTCTGTTACGGGAATCC
GTCGCCGACGAGGACGGAGGACGACATCGCTGCAACTCGTTCTTCCTGGA
TTCTTGATGGTGACATGTGGCAGCTGTTGGTCATGCTGTTCTTCTGGCTG
CTTTACGTCGTCATTGCCATTGTGCGCTGGCTGCGTCGTCTCCAGGCAGC
ACATCGCCGAAAGCAGCTGTTTCGCAAACAGAGAGCGTTTCTAACTGACA
AGCTTCAAACCGCTCCTAATTACTCGGCGTGGCACTCTGACGCCAACGAG
GTAGATATGCTGGAGGGGCGCACCGAATGGAAGTATAGCCCCCAGCTGGC
CGTCGACAACCTGTGTGACTGTTGCAGCCAACTTTGGAACAGTCGAACCA
AGCTGCGAGAACGCGCCGTCATCAATGCGCACGCGAACGATGGCATCAAC
AGAGTGTGCGACACCAAAATGATTGCCGGCAAGCTACGGGAGCTTGCTGT
TCTGTTTAACGAAGGCGACGTGCGGGGAATCGCATTCGCACTACGCGCTG
GTATGGTGCGTAATCTCGCCGAAACGTGTCATCCTGAGATGCATGCTCAC
TCGCGCGTCGGTACAAAGCTTATCGCTGAAGACTATGTCAAAGACGTCTC
GTTTCTCATATCGTACATTGCTGAATCAGAGGCGCTGCCGCGCATCACGC
TCTTCCCCAGCACGTCTGCGTCACCGGTGATCCGGCATCCCGCGAAGGAA
CCTTCGAATATTGTGGATAAGCTTTTACTTGGGCGTGGCGCCTGTACGCC
AGAACCGGCAGTGGTGGCAAACGACGAAACTGAAGTGAAGCAGAACCCGC
AGCAAGTGCTGCAAATGGCCTCACAGAGATTGGAAAATGACATCACCATG
ACTGCCAATGAAGACTCGGGTAAGCCCAAGCAGGAAGAAATGAAGGCCGC
TTCCGGCGACTGTAATCTTGAAGATCAACCGTGCGACGGTGGTACGGAGT
GTTGCGATATGCAGCAATTCTACATCAAGACTTACATGGATGGCGGCTCC
ACATGTCGCTTTTGGTGGAGTCTTTGCGAAGATTCGGGAGCAAGATCAAA
GGCCGCAGGATAA
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Coding sequence (CDS) from alignment at tig00000140_pilon:2920..4332+

>Ggra1131.t1 ID=Ggra1131.t1|Name=Ggra1131.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1413bp|location=Sequence derived from alignment at tig00000140_pilon:2920..4332+ (Gracilaria gracilis GNS1m male)
ATGAGGCGCTACGCGCCGCATCATCCCACCGTGCAGTCGTCGTCGGCGCC
CAACCTCACGAAGCCTTCTCGTCGACGCGCGCAGTCCAATCTTCCTAGTC
TGCCCGCCGCGTTGCGCGAGCTGTTCGCCACACCTAGTTCGCCGTTGCCG
CTTCCGGCTTCGCAGGCGCATACGCCCGTCGATGGTGTGCACGCCAAGTC
GCGGCTGGCCGCGCTTCATAGGTGGCTTGACCTGCGTCCGCCTTTTTCCT
TGTTGCCCAAAAATGCGCTCAGGAAGTTCATGCGACCAGAGGCCGTCATT
GTGAGAAGCCACCAGTTACATACATACTGCCGTGTCTGTTACGGGAATCC
GTCGCCGACGAGGACGGAGGACGACATCGCTGCAACTCGTTCTTCCTGGA
TTCTTGATGGTGACATGTGGCAGCTGTTGGTCATGCTGTTCTTCTGGCTG
CTTTACGTCGTCATTGCCATTGTGCGCTGGCTGCGTCGTCTCCAGGCAGC
ACATCGCCGAAAGCAGCTGTTTCGCAAACAGAGAGCGTTTCTAACTGACA
AGCTTCAAACCGCTCCTAATTACTCGGCGTGGCACTCTGACGCCAACGAG
GTAGATATGCTGGAGGGGCGCACCGAATGGAAGTATAGCCCCCAGCTGGC
CGTCGACAACCTGTGTGACTGTTGCAGCCAACTTTGGAACAGTCGAACCA
AGCTGCGAGAACGCGCCGTCATCAATGCGCACGCGAACGATGGCATCAAC
AGAGTGTGCGACACCAAAATGATTGCCGGCAAGCTACGGGAGCTTGCTGT
TCTGTTTAACGAAGGCGACGTGCGGGGAATCGCATTCGCACTACGCGCTG
GTATGGTGCGTAATCTCGCCGAAACGTGTCATCCTGAGATGCATGCTCAC
TCGCGCGTCGGTACAAAGCTTATCGCTGAAGACTATGTCAAAGACGTCTC
GTTTCTCATATCGTACATTGCTGAATCAGAGGCGCTGCCGCGCATCACGC
TCTTCCCCAGCACGTCTGCGTCACCGGTGATCCGGCATCCCGCGAAGGAA
CCTTCGAATATTGTGGATAAGCTTTTACTTGGGCGTGGCGCCTGTACGCC
AGAACCGGCAGTGGTGGCAAACGACGAAACTGAAGTGAAGCAGAACCCGC
AGCAAGTGCTGCAAATGGCCTCACAGAGATTGGAAAATGACATCACCATG
ACTGCCAATGAAGACTCGGGTAAGCCCAAGCAGGAAGAAATGAAGGCCGC
TTCCGGCGACTGTAATCTTGAAGATCAACCGTGCGACGGTGGTACGGAGT
GTTGCGATATGCAGCAATTCTACATCAAGACTTACATGGATGGCGGCTCC
ACATGTCGCTTTTGGTGGAGTCTTTGCGAAGATTCGGGAGCAAGATCAAA
GGCCGCAGGATAA
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