Ggra1124.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1124.t1
Unique NameGgra1124.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000255_piloncontigtig00000255_pilon:4294..4989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1124Ggra1124Gracilaria gracilis GNS1m malegenetig00000255_pilon 4294..4989 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1124.t1Ggra1124.t1Gracilaria gracilis GNS1m malepolypeptidetig00000255_pilon 4294..4989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1124.t1.CDS1Ggra1124.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000255_pilon 4294..4779 -
Ggra1124.t1.CDS2Ggra1124.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000255_pilon 4957..4989 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1124.t1.exon1Ggra1124.t1.exon1Gracilaria gracilis GNS1m maleexontig00000255_pilon 4294..4779 -
Ggra1124.t1.exon2Ggra1124.t1.exon2Gracilaria gracilis GNS1m maleexontig00000255_pilon 4957..4989 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1124.t1.intron1Ggra1124.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000255_pilon 4780..4956 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1124.t1.start1Ggra1124.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000255_pilon 4987..4989 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1124.t1 ID=Ggra1124.t1|Name=Ggra1124.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=173bp
MAEEDIITPANREELMRHNGQHTAGARDDPHELDRMFGISLTELEQMASN
NLPGLVELVKTCLRLDPQLTPRDFGQENAASVSGLVLKWQIAATRSALER
RDLTGNQNVTSNPAVVHDEDPPPPPKRSNPLSGLLQDKVRSKKARIELHA
GVPTGEGDDDAQDFGLRLGAPTP
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spliced messenger RNA

>Ggra1124.t1 ID=Ggra1124.t1|Name=Ggra1124.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00000255_pilon:4294..4989- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAGGAAGACATTATAACGCCGGCTAACCGTGAAGAACTGATGCG
CCACAACGGTCAGCATACTGCAGGCGCCAGAGATGATCCTCATGAGTTGG
ATAGAATGTTTGGCATATCTTTGACTGAGCTTGAGCAAATGGCAAGCAAT
AATCTCCCTGGCTTAGTGGAGCTCGTAAAGACTTGCTTGCGTCTGGATCC
CCAACTCACCCCACGGGATTTCGGTCAGGAAAATGCAGCGTCTGTTTCTG
GACTAGTGCTAAAGTGGCAAATTGCTGCTACGCGATCCGCGCTAGAACGA
AGAGACCTAACTGGTAACCAGAATGTAACATCGAATCCTGCGGTGGTACA
TGATGAGGATCCTCCGCCTCCACCGAAGCGTTCAAATCCGCTTTCTGGCC
TTCTACAGGACAAAGTGAGATCTAAGAAGGCCAGAATCGAACTCCATGCA
GGTGTTCCAACCGGAGAAGGAGATGATGACGCACAGGATTTTGGCCTGCG
GCTCGGAGCCCCAACGCCC
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protein sequence of Ggra1124.t1

>Ggra1124.t1 ID=Ggra1124.t1|Name=Ggra1124.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=173bp
MAEEDIITPANREELMRHNGQHTAGARDDPHELDRMFGISLTELEQMASN
NLPGLVELVKTCLRLDPQLTPRDFGQENAASVSGLVLKWQIAATRSALER
RDLTGNQNVTSNPAVVHDEDPPPPPKRSNPLSGLLQDKVRSKKARIELHA
GVPTGEGDDDAQDFGLRLGAPTP
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mRNA from alignment at tig00000255_pilon:4294..4989-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1124.t1 ID=Ggra1124.t1|Name=Ggra1124.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00000255_pilon:4294..4989- (Gracilaria gracilis GNS1m male)
ATGGCCGAGGAAGACATTATAACGCCGGCTAACGTAAGTGCCGTCCAATT
TTCGTTCGATAATCTGACCTCTTTGACACTCGAACAGCTCTGCGATGCGA
ATCACGCCACTCTGAAGAAAGTGTTCACGTCAGCTCCGGAAGAGCGCCGA
AGCCACCATTCTGTGGCCCCCAGGAGTTCTTACAAATTCTTAGCAATTGT
CCTTCGTTAGCGTGAAGAACTGATGCGCCACAACGGTCAGCATACTGCAG
GCGCCAGAGATGATCCTCATGAGTTGGATAGAATGTTTGGCATATCTTTG
ACTGAGCTTGAGCAAATGGCAAGCAATAATCTCCCTGGCTTAGTGGAGCT
CGTAAAGACTTGCTTGCGTCTGGATCCCCAACTCACCCCACGGGATTTCG
GTCAGGAAAATGCAGCGTCTGTTTCTGGACTAGTGCTAAAGTGGCAAATT
GCTGCTACGCGATCCGCGCTAGAACGAAGAGACCTAACTGGTAACCAGAA
TGTAACATCGAATCCTGCGGTGGTACATGATGAGGATCCTCCGCCTCCAC
CGAAGCGTTCAAATCCGCTTTCTGGCCTTCTACAGGACAAAGTGAGATCT
AAGAAGGCCAGAATCGAACTCCATGCAGGTGTTCCAACCGGAGAAGGAGA
TGATGACGCACAGGATTTTGGCCTGCGGCTCGGAGCCCCAACGCCC
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Coding sequence (CDS) from alignment at tig00000255_pilon:4294..4989-

>Ggra1124.t1 ID=Ggra1124.t1|Name=Ggra1124.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=519bp|location=Sequence derived from alignment at tig00000255_pilon:4294..4989- (Gracilaria gracilis GNS1m male)
ATGGCCGAGGAAGACATTATAACGCCGGCTAACCGTGAAGAACTGATGCG
CCACAACGGTCAGCATACTGCAGGCGCCAGAGATGATCCTCATGAGTTGG
ATAGAATGTTTGGCATATCTTTGACTGAGCTTGAGCAAATGGCAAGCAAT
AATCTCCCTGGCTTAGTGGAGCTCGTAAAGACTTGCTTGCGTCTGGATCC
CCAACTCACCCCACGGGATTTCGGTCAGGAAAATGCAGCGTCTGTTTCTG
GACTAGTGCTAAAGTGGCAAATTGCTGCTACGCGATCCGCGCTAGAACGA
AGAGACCTAACTGGTAACCAGAATGTAACATCGAATCCTGCGGTGGTACA
TGATGAGGATCCTCCGCCTCCACCGAAGCGTTCAAATCCGCTTTCTGGCC
TTCTACAGGACAAAGTGAGATCTAAGAAGGCCAGAATCGAACTCCATGCA
GGTGTTCCAACCGGAGAAGGAGATGATGACGCACAGGATTTTGGCCTGCG
GCTCGGAGCCCCAACGCCC
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