Ggra1122.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1122.t1
Unique NameGgra1122.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000945_piloncontigtig00000945_pilon:179196..180269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1122Ggra1122Gracilaria gracilis GNS1m malegenetig00000945_pilon 179196..180269 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1122.t1.start1Ggra1122.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000945_pilon 179196..179198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1122.t1.CDS1Ggra1122.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000945_pilon 179196..180269 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1122.t1.exon1Ggra1122.t1.exon1Gracilaria gracilis GNS1m maleexontig00000945_pilon 179196..180269 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1122.t1.stop1Ggra1122.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000945_pilon 180267..180269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1122.t1Ggra1122.t1Gracilaria gracilis GNS1m malepolypeptidetig00000945_pilon 179196..180269 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1122.t1 ID=Ggra1122.t1|Name=Ggra1122.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=358bp
MAQSSSNINPSQPSWRFTEELVELTSSNNHQWIQNFRDTVIEHEHEAILQ
RNYTPTTNEEIKAVFSVRRMITKTITPEVVNLIADPEIFSKPPGNIVEQI
ITILTTKNQTDVFSLLNEVLNVKRSGSISEYIAEHLKIRGKQIVANTLGI
QRETYTVNFILQGLTADQRFGAQATNMLVNARPTTINECPLRLEEFERLI
RRQNDYISPIPSASGRGRGAYRGRGRGRGHESNRYQQKNSDNSQVKDMLT
QIVSKINKLQADTKAKKPRGGRARANYTNAEHHLSDETLHTLFVAASDQN
HKQRKYIIDSGAHPSIVNHFLRNTTDLSFPIISATATSAPLKSTKKGTRL
IQNKAGH*
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spliced messenger RNA

>Ggra1122.t1 ID=Ggra1122.t1|Name=Ggra1122.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000945_pilon:179196..180269+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACAATCTTCATCCAATATCAACCCGTCCCAACCATCCTGGAGATT
CACCGAAGAGCTTGTAGAGCTCACCTCATCCAATAATCATCAATGGATTC
AGAATTTCAGAGACACAGTTATAGAACACGAACACGAAGCAATACTGCAA
CGAAATTATACTCCAACAACAAACGAAGAGATCAAAGCAGTTTTCAGCGT
TCGTCGCATGATCACCAAAACTATAACGCCCGAAGTGGTCAACCTCATTG
CTGACCCAGAAATATTCTCCAAACCACCAGGAAACATCGTAGAACAAATC
ATAACAATTCTCACGACGAAGAACCAAACAGACGTCTTTTCGCTCTTGAA
TGAAGTTCTAAATGTCAAACGAAGCGGAAGCATATCAGAATACATCGCAG
AACATCTAAAGATCAGAGGGAAGCAAATTGTGGCCAACACTTTAGGAATT
CAGAGAGAGACATACACTGTTAATTTCATATTGCAGGGGCTCACAGCAGA
TCAAAGATTCGGGGCACAAGCAACGAACATGCTAGTCAACGCCCGCCCAA
CCACCATCAACGAGTGCCCACTACGTCTGGAGGAATTCGAGCGCCTAATT
CGACGCCAAAATGACTATATAAGCCCCATTCCATCCGCATCTGGACGAGG
TCGCGGAGCCTATCGTGGCCGTGGCCGAGGCCGTGGCCATGAATCGAACC
GCTACCAGCAGAAAAACTCCGACAACTCCCAAGTGAAAGACATGCTCACG
CAAATCGTGTCGAAAATCAACAAGCTACAGGCAGACACGAAGGCTAAGAA
ACCACGTGGTGGTCGCGCTCGAGCGAACTATACCAACGCAGAACACCACC
TCTCCGATGAAACCCTTCACACATTGTTTGTCGCTGCATCAGATCAAAAC
CACAAACAGCGTAAGTACATAATAGACTCAGGTGCCCACCCGTCTATTGT
CAACCACTTCCTCCGAAACACCACTGACCTCTCATTTCCCATCATCTCGG
CAACCGCGACATCTGCTCCACTTAAGAGCACCAAGAAGGGCACACGTCTG
ATTCAAAATAAGGCTGGGCACTAA
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protein sequence of Ggra1122.t1

>Ggra1122.t1 ID=Ggra1122.t1|Name=Ggra1122.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=358bp
MAQSSSNINPSQPSWRFTEELVELTSSNNHQWIQNFRDTVIEHEHEAILQ
RNYTPTTNEEIKAVFSVRRMITKTITPEVVNLIADPEIFSKPPGNIVEQI
ITILTTKNQTDVFSLLNEVLNVKRSGSISEYIAEHLKIRGKQIVANTLGI
QRETYTVNFILQGLTADQRFGAQATNMLVNARPTTINECPLRLEEFERLI
RRQNDYISPIPSASGRGRGAYRGRGRGRGHESNRYQQKNSDNSQVKDMLT
QIVSKINKLQADTKAKKPRGGRARANYTNAEHHLSDETLHTLFVAASDQN
HKQRKYIIDSGAHPSIVNHFLRNTTDLSFPIISATATSAPLKSTKKGTRL
IQNKAGH*
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mRNA from alignment at tig00000945_pilon:179196..180269+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1122.t1 ID=Ggra1122.t1|Name=Ggra1122.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000945_pilon:179196..180269+ (Gracilaria gracilis GNS1m male)
ATGGCACAATCTTCATCCAATATCAACCCGTCCCAACCATCCTGGAGATT
CACCGAAGAGCTTGTAGAGCTCACCTCATCCAATAATCATCAATGGATTC
AGAATTTCAGAGACACAGTTATAGAACACGAACACGAAGCAATACTGCAA
CGAAATTATACTCCAACAACAAACGAAGAGATCAAAGCAGTTTTCAGCGT
TCGTCGCATGATCACCAAAACTATAACGCCCGAAGTGGTCAACCTCATTG
CTGACCCAGAAATATTCTCCAAACCACCAGGAAACATCGTAGAACAAATC
ATAACAATTCTCACGACGAAGAACCAAACAGACGTCTTTTCGCTCTTGAA
TGAAGTTCTAAATGTCAAACGAAGCGGAAGCATATCAGAATACATCGCAG
AACATCTAAAGATCAGAGGGAAGCAAATTGTGGCCAACACTTTAGGAATT
CAGAGAGAGACATACACTGTTAATTTCATATTGCAGGGGCTCACAGCAGA
TCAAAGATTCGGGGCACAAGCAACGAACATGCTAGTCAACGCCCGCCCAA
CCACCATCAACGAGTGCCCACTACGTCTGGAGGAATTCGAGCGCCTAATT
CGACGCCAAAATGACTATATAAGCCCCATTCCATCCGCATCTGGACGAGG
TCGCGGAGCCTATCGTGGCCGTGGCCGAGGCCGTGGCCATGAATCGAACC
GCTACCAGCAGAAAAACTCCGACAACTCCCAAGTGAAAGACATGCTCACG
CAAATCGTGTCGAAAATCAACAAGCTACAGGCAGACACGAAGGCTAAGAA
ACCACGTGGTGGTCGCGCTCGAGCGAACTATACCAACGCAGAACACCACC
TCTCCGATGAAACCCTTCACACATTGTTTGTCGCTGCATCAGATCAAAAC
CACAAACAGCGTAAGTACATAATAGACTCAGGTGCCCACCCGTCTATTGT
CAACCACTTCCTCCGAAACACCACTGACCTCTCATTTCCCATCATCTCGG
CAACCGCGACATCTGCTCCACTTAAGAGCACCAAGAAGGGCACACGTCTG
ATTCAAAATAAGGCTGGGCACTAA
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Coding sequence (CDS) from alignment at tig00000945_pilon:179196..180269+

>Ggra1122.t1 ID=Ggra1122.t1|Name=Ggra1122.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1074bp|location=Sequence derived from alignment at tig00000945_pilon:179196..180269+ (Gracilaria gracilis GNS1m male)
ATGGCACAATCTTCATCCAATATCAACCCGTCCCAACCATCCTGGAGATT
CACCGAAGAGCTTGTAGAGCTCACCTCATCCAATAATCATCAATGGATTC
AGAATTTCAGAGACACAGTTATAGAACACGAACACGAAGCAATACTGCAA
CGAAATTATACTCCAACAACAAACGAAGAGATCAAAGCAGTTTTCAGCGT
TCGTCGCATGATCACCAAAACTATAACGCCCGAAGTGGTCAACCTCATTG
CTGACCCAGAAATATTCTCCAAACCACCAGGAAACATCGTAGAACAAATC
ATAACAATTCTCACGACGAAGAACCAAACAGACGTCTTTTCGCTCTTGAA
TGAAGTTCTAAATGTCAAACGAAGCGGAAGCATATCAGAATACATCGCAG
AACATCTAAAGATCAGAGGGAAGCAAATTGTGGCCAACACTTTAGGAATT
CAGAGAGAGACATACACTGTTAATTTCATATTGCAGGGGCTCACAGCAGA
TCAAAGATTCGGGGCACAAGCAACGAACATGCTAGTCAACGCCCGCCCAA
CCACCATCAACGAGTGCCCACTACGTCTGGAGGAATTCGAGCGCCTAATT
CGACGCCAAAATGACTATATAAGCCCCATTCCATCCGCATCTGGACGAGG
TCGCGGAGCCTATCGTGGCCGTGGCCGAGGCCGTGGCCATGAATCGAACC
GCTACCAGCAGAAAAACTCCGACAACTCCCAAGTGAAAGACATGCTCACG
CAAATCGTGTCGAAAATCAACAAGCTACAGGCAGACACGAAGGCTAAGAA
ACCACGTGGTGGTCGCGCTCGAGCGAACTATACCAACGCAGAACACCACC
TCTCCGATGAAACCCTTCACACATTGTTTGTCGCTGCATCAGATCAAAAC
CACAAACAGCGTAAGTACATAATAGACTCAGGTGCCCACCCGTCTATTGT
CAACCACTTCCTCCGAAACACCACTGACCTCTCATTTCCCATCATCTCGG
CAACCGCGACATCTGCTCCACTTAAGAGCACCAAGAAGGGCACACGTCTG
ATTCAAAATAAGGCTGGGCACTAA
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