Ggra1121.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1121.t1
Unique NameGgra1121.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000945_piloncontigtig00000945_pilon:170586..171242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1121Ggra1121Gracilaria gracilis GNS1m malegenetig00000945_pilon 170586..171242 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1121.t1.stop1Ggra1121.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000945_pilon 170586..170588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1121.t1.CDS1Ggra1121.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000945_pilon 170586..171242 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1121.t1.exon1Ggra1121.t1.exon1Gracilaria gracilis GNS1m maleexontig00000945_pilon 170586..171242 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1121.t1.start1Ggra1121.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000945_pilon 171240..171242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1121.t1Ggra1121.t1Gracilaria gracilis GNS1m malepolypeptidetig00000945_pilon 170586..171242 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1121.t1 ID=Ggra1121.t1|Name=Ggra1121.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=219bp
MAKIPSDEVPSQIGWRMYYASIAVATKESIVYAQKQNGNMKRGLSLGAYF
NEGENTYRLHAGDILFISAAQPLTVQPATKHRMRTARMITWTISEKNISN
HNEPHSMPPSPAILMPLYDLAESTNDAKVVYEAQRGEPNKRPQESCNQAG
VMMESLRVTPRQYASWDIARAAIRESYIIPFCSTRFWEDFASAVGVIRDA
EQPVKDVEDSLLFGSANN*
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spliced messenger RNA

>Ggra1121.t1 ID=Ggra1121.t1|Name=Ggra1121.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000945_pilon:170586..171242- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAAAATTCCGAGCGACGAAGTGCCAAGCCAGATTGGCTGGAGGAT
GTATTACGCATCTATTGCGGTAGCAACTAAAGAATCTATAGTCTACGCGC
AGAAACAGAACGGTAATATGAAGAGAGGGCTCTCTTTGGGGGCCTATTTT
AATGAAGGGGAAAACACTTATCGGCTTCATGCGGGGGATATTCTGTTCAT
CTCCGCTGCCCAACCACTTACCGTTCAACCCGCGACAAAACACCGCATGC
GAACGGCAAGAATGATAACCTGGACTATAAGCGAAAAGAACATCAGCAAC
CACAACGAGCCCCACTCTATGCCCCCATCACCGGCCATTCTTATGCCATT
GTATGATCTTGCGGAAAGTACCAATGATGCGAAAGTGGTCTACGAGGCGC
AGAGAGGAGAGCCCAACAAGCGACCGCAGGAGAGTTGTAACCAAGCGGGA
GTAATGATGGAAAGTCTACGTGTTACCCCCCGTCAGTATGCATCTTGGGA
TATTGCACGAGCTGCAATTCGCGAGAGCTACATCATTCCATTCTGTTCAA
CCCGTTTTTGGGAGGACTTTGCGTCTGCCGTGGGCGTAATTCGCGACGCA
GAGCAGCCCGTTAAAGATGTTGAGGACTCCCTTTTGTTTGGTAGTGCAAA
TAATTGA
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protein sequence of Ggra1121.t1

>Ggra1121.t1 ID=Ggra1121.t1|Name=Ggra1121.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=219bp
MAKIPSDEVPSQIGWRMYYASIAVATKESIVYAQKQNGNMKRGLSLGAYF
NEGENTYRLHAGDILFISAAQPLTVQPATKHRMRTARMITWTISEKNISN
HNEPHSMPPSPAILMPLYDLAESTNDAKVVYEAQRGEPNKRPQESCNQAG
VMMESLRVTPRQYASWDIARAAIRESYIIPFCSTRFWEDFASAVGVIRDA
EQPVKDVEDSLLFGSANN*
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mRNA from alignment at tig00000945_pilon:170586..171242-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1121.t1 ID=Ggra1121.t1|Name=Ggra1121.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000945_pilon:170586..171242- (Gracilaria gracilis GNS1m male)
ATGGCGAAAATTCCGAGCGACGAAGTGCCAAGCCAGATTGGCTGGAGGAT
GTATTACGCATCTATTGCGGTAGCAACTAAAGAATCTATAGTCTACGCGC
AGAAACAGAACGGTAATATGAAGAGAGGGCTCTCTTTGGGGGCCTATTTT
AATGAAGGGGAAAACACTTATCGGCTTCATGCGGGGGATATTCTGTTCAT
CTCCGCTGCCCAACCACTTACCGTTCAACCCGCGACAAAACACCGCATGC
GAACGGCAAGAATGATAACCTGGACTATAAGCGAAAAGAACATCAGCAAC
CACAACGAGCCCCACTCTATGCCCCCATCACCGGCCATTCTTATGCCATT
GTATGATCTTGCGGAAAGTACCAATGATGCGAAAGTGGTCTACGAGGCGC
AGAGAGGAGAGCCCAACAAGCGACCGCAGGAGAGTTGTAACCAAGCGGGA
GTAATGATGGAAAGTCTACGTGTTACCCCCCGTCAGTATGCATCTTGGGA
TATTGCACGAGCTGCAATTCGCGAGAGCTACATCATTCCATTCTGTTCAA
CCCGTTTTTGGGAGGACTTTGCGTCTGCCGTGGGCGTAATTCGCGACGCA
GAGCAGCCCGTTAAAGATGTTGAGGACTCCCTTTTGTTTGGTAGTGCAAA
TAATTGA
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Coding sequence (CDS) from alignment at tig00000945_pilon:170586..171242-

>Ggra1121.t1 ID=Ggra1121.t1|Name=Ggra1121.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00000945_pilon:170586..171242- (Gracilaria gracilis GNS1m male)
ATGGCGAAAATTCCGAGCGACGAAGTGCCAAGCCAGATTGGCTGGAGGAT
GTATTACGCATCTATTGCGGTAGCAACTAAAGAATCTATAGTCTACGCGC
AGAAACAGAACGGTAATATGAAGAGAGGGCTCTCTTTGGGGGCCTATTTT
AATGAAGGGGAAAACACTTATCGGCTTCATGCGGGGGATATTCTGTTCAT
CTCCGCTGCCCAACCACTTACCGTTCAACCCGCGACAAAACACCGCATGC
GAACGGCAAGAATGATAACCTGGACTATAAGCGAAAAGAACATCAGCAAC
CACAACGAGCCCCACTCTATGCCCCCATCACCGGCCATTCTTATGCCATT
GTATGATCTTGCGGAAAGTACCAATGATGCGAAAGTGGTCTACGAGGCGC
AGAGAGGAGAGCCCAACAAGCGACCGCAGGAGAGTTGTAACCAAGCGGGA
GTAATGATGGAAAGTCTACGTGTTACCCCCCGTCAGTATGCATCTTGGGA
TATTGCACGAGCTGCAATTCGCGAGAGCTACATCATTCCATTCTGTTCAA
CCCGTTTTTGGGAGGACTTTGCGTCTGCCGTGGGCGTAATTCGCGACGCA
GAGCAGCCCGTTAAAGATGTTGAGGACTCCCTTTTGTTTGGTAGTGCAAA
TAATTGA
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