Ggra1120.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1120.t1
Unique NameGgra1120.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length136
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000945_piloncontigtig00000945_pilon:138286..138809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog981383.AEWH01000050_gene168
Preferred namegatA
PFAMsAmidase
Max annot lvl91061|Bacilli
KEGG rclassRC00010
KEGG koko:K02433
KEGG ReactionR03905,R04212
KEGG Pathwayko00970,ko01100,map00970,map01100
Evalue5.25e-25
EggNOG OGsCOG0154@1|root,COG0154@2|Bacteria,1TP0C@1239|Firmicutes,4HBAZ@91061|Bacilli
EC6.3.5.6,6.3.5.7
DescriptionAllows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1120Ggra1120Gracilaria gracilis GNS1m malegenetig00000945_pilon 138286..138809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1120.t1Ggra1120.t1Gracilaria gracilis GNS1m malepolypeptidetig00000945_pilon 138286..138809 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1120.t1.stop1Ggra1120.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000945_pilon 138286..138288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1120.t1.CDS1Ggra1120.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000945_pilon 138286..138674 -
Ggra1120.t1.CDS2Ggra1120.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000945_pilon 138791..138809 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1120.t1.exon1Ggra1120.t1.exon1Gracilaria gracilis GNS1m maleexontig00000945_pilon 138286..138674 -
Ggra1120.t1.exon2Ggra1120.t1.exon2Gracilaria gracilis GNS1m maleexontig00000945_pilon 138791..138809 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1120.t1.intron1Ggra1120.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000945_pilon 138675..138790 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1120.t1.start1Ggra1120.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000945_pilon 138807..138809 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1120.t1 ID=Ggra1120.t1|Name=Ggra1120.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=136bp
MCPVALDTVEPKCRNAQHATFKIQVIGAVDEMDSTASNASVPPFTELLEG
DLSDVPNGVVNESLSSGVNAEVAEAVQGALNVFRNLGSKAEVVSLRLLSV
AAPGYYVITNSESSANLERYDDVRYGVWEQHAKNS*
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spliced messenger RNA

>Ggra1120.t1 ID=Ggra1120.t1|Name=Ggra1120.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=408bp|location=Sequence derived from alignment at tig00000945_pilon:138286..138809- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTCCCGTGGCATTGGACACAGTTGAGCCGAAATGTCGCAACGCTCA
ACATGCCACATTTAAGATACAAGTTATTGGTGCGGTTGATGAGATGGATT
CTACAGCGAGTAACGCTTCTGTGCCCCCATTCACAGAGCTTTTGGAAGGA
GACCTTTCTGATGTGCCAAATGGCGTGGTCAATGAATCGCTGTCTTCTGG
AGTGAATGCTGAAGTAGCTGAAGCGGTACAGGGTGCGTTGAATGTATTTA
GGAATCTTGGCTCGAAAGCTGAGGTGGTGTCGTTACGGCTGCTGTCAGTG
GCCGCTCCAGGGTACTACGTAATCACGAACTCTGAATCCTCAGCCAATTT
AGAGAGGTATGACGATGTTAGATACGGGGTGTGGGAGCAACATGCCAAGA
ACTCATAG
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protein sequence of Ggra1120.t1

>Ggra1120.t1 ID=Ggra1120.t1|Name=Ggra1120.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=136bp
MCPVALDTVEPKCRNAQHATFKIQVIGAVDEMDSTASNASVPPFTELLEG
DLSDVPNGVVNESLSSGVNAEVAEAVQGALNVFRNLGSKAEVVSLRLLSV
AAPGYYVITNSESSANLERYDDVRYGVWEQHAKNS*
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mRNA from alignment at tig00000945_pilon:138286..138809-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1120.t1 ID=Ggra1120.t1|Name=Ggra1120.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=524bp|location=Sequence derived from alignment at tig00000945_pilon:138286..138809- (Gracilaria gracilis GNS1m male)
ATGTGTCCCGTGGCATTGGGTTCGGATACACGGGAAGTATTGGACATCCG
GCATCATTCCGCGACGTAACGGGCTTGAAACCCTCATATGTTCGGGTGAG
CCGTCATCGTCTTCTTTCTTATCGTTCTTCCCTAGACACAGTTGAGCCGA
AATGTCGCAACGCTCAACATGCCACATTTAAGATACAAGTTATTGGTGCG
GTTGATGAGATGGATTCTACAGCGAGTAACGCTTCTGTGCCCCCATTCAC
AGAGCTTTTGGAAGGAGACCTTTCTGATGTGCCAAATGGCGTGGTCAATG
AATCGCTGTCTTCTGGAGTGAATGCTGAAGTAGCTGAAGCGGTACAGGGT
GCGTTGAATGTATTTAGGAATCTTGGCTCGAAAGCTGAGGTGGTGTCGTT
ACGGCTGCTGTCAGTGGCCGCTCCAGGGTACTACGTAATCACGAACTCTG
AATCCTCAGCCAATTTAGAGAGGTATGACGATGTTAGATACGGGGTGTGG
GAGCAACATGCCAAGAACTCATAG
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Coding sequence (CDS) from alignment at tig00000945_pilon:138286..138809-

>Ggra1120.t1 ID=Ggra1120.t1|Name=Ggra1120.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=408bp|location=Sequence derived from alignment at tig00000945_pilon:138286..138809- (Gracilaria gracilis GNS1m male)
ATGTGTCCCGTGGCATTGGACACAGTTGAGCCGAAATGTCGCAACGCTCA
ACATGCCACATTTAAGATACAAGTTATTGGTGCGGTTGATGAGATGGATT
CTACAGCGAGTAACGCTTCTGTGCCCCCATTCACAGAGCTTTTGGAAGGA
GACCTTTCTGATGTGCCAAATGGCGTGGTCAATGAATCGCTGTCTTCTGG
AGTGAATGCTGAAGTAGCTGAAGCGGTACAGGGTGCGTTGAATGTATTTA
GGAATCTTGGCTCGAAAGCTGAGGTGGTGTCGTTACGGCTGCTGTCAGTG
GCCGCTCCAGGGTACTACGTAATCACGAACTCTGAATCCTCAGCCAATTT
AGAGAGGTATGACGATGTTAGATACGGGGTGTGGGAGCAACATGCCAAGA
ACTCATAG
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