Ggra1119.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1119.t1
Unique Name	Ggra1119.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	354

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000945_pilon	contig	tig00000945_pilon:97459..98520 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1119	Ggra1119	Gracilaria gracilis GNS1m male	gene	tig00000945_pilon 97459..98520 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1119.t1.start1	Ggra1119.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000945_pilon 97459..97461 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1119.t1.CDS1	Ggra1119.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000945_pilon 97459..98520 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1119.t1.exon1	Ggra1119.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000945_pilon 97459..98520 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1119.t1.stop1	Ggra1119.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000945_pilon 98518..98520 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1119.t1	Ggra1119.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000945_pilon 97459..98520 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000945_pilon:97459..98520+
coding sequence from alignment at tig00000945_pilon:97459..98520+

mRNA sequence

>Ggra1119.t1 ID=Ggra1119.t1|Name=Ggra1119.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp
MVLIELKSPFVSVIGTILATLSEIALISSLLTLNGFYACKRLQAGRSISI
RSHLRRISIINVLSLFIFFSVEVVFAFFNDPSSFYRSEVHSCISVTNSAQ
ERGNSLQPTRANDIFVECRDIGEGTITQFAGNFSIETQQVQCSDNAMYSY
KYSENQGKTAGELNLTRLDAELGCVPDGGRNGCVFVKQVANTSYCSEPFY
LDQIKSLPEKMLFLTTELHFKPPSDLKIFARRALRTFLENIGSKAVLRRA
IYSGAQQTNCPFDIRKGEATIVPLAVIVVLAFVWGTPIVIFLSSFLLRKR
MFFDVSNPMDWGRQIVGTDEVAPSENLLLKKDEEQRTIVVISASAEETVV
CNI*

spliced messenger RNA

>Ggra1119.t1 ID=Ggra1119.t1|Name=Ggra1119.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00000945_pilon:97459..98520+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTCATCGAACTTAAGTCCCCTTTCGTTAGTGTTATTGGCACTAT
CTTGGCTACGCTCTCTGAGATCGCTCTCATCTCCTCTCTATTAACTCTCA
ACGGCTTTTATGCGTGCAAACGTCTGCAGGCCGGTCGTTCTATCAGTATT
CGTTCTCATCTCAGGCGCATTTCCATCATCAACGTTCTCTCGCTCTTCAT
TTTTTTCAGTGTCGAGGTTGTTTTTGCCTTTTTCAACGATCCCTCTAGCT
TCTATCGCTCCGAAGTGCACAGCTGTATTAGCGTGACAAATTCTGCTCAG
GAAAGAGGTAATTCTCTCCAACCAACCAGAGCAAATGACATTTTCGTCGA
GTGCCGTGATATCGGTGAGGGAACGATCACTCAGTTTGCTGGCAACTTCA
GTATCGAAACCCAACAAGTGCAATGTTCTGACAACGCCATGTACAGTTAC
AAGTACAGCGAAAACCAAGGGAAAACCGCAGGTGAACTGAATCTCACTAG
ACTGGATGCCGAGCTGGGATGTGTCCCAGATGGCGGTCGAAACGGTTGCG
TATTCGTGAAACAGGTCGCCAATACTTCGTACTGCTCTGAACCCTTTTAC
TTGGATCAAATTAAGTCACTTCCAGAAAAGATGTTATTCTTGACAACAGA
ACTGCATTTCAAGCCTCCATCAGATTTAAAGATCTTTGCGAGAAGAGCGC
TAAGAACGTTCTTGGAAAACATCGGCAGTAAAGCTGTGTTGCGAAGAGCT
ATTTACAGCGGAGCACAACAAACGAACTGCCCCTTCGACATAAGGAAAGG
GGAAGCAACGATTGTGCCACTTGCAGTTATAGTAGTGCTTGCCTTTGTCT
GGGGAACACCTATAGTCATCTTTCTTTCATCTTTTCTTCTTCGCAAAAGA
ATGTTTTTCGACGTGAGCAATCCAATGGACTGGGGGAGGCAAATTGTCGG
TACTGATGAAGTTGCACCCAGTGAGAATCTGCTTCTCAAAAAGGATGAAG
AGCAAAGGACAATAGTGGTTATTTCTGCTTCAGCCGAAGAGACAGTTGTT
TGCAATATATGA

protein sequence of Ggra1119.t1

>Ggra1119.t1 ID=Ggra1119.t1|Name=Ggra1119.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=354bp
MVLIELKSPFVSVIGTILATLSEIALISSLLTLNGFYACKRLQAGRSISI
RSHLRRISIINVLSLFIFFSVEVVFAFFNDPSSFYRSEVHSCISVTNSAQ
ERGNSLQPTRANDIFVECRDIGEGTITQFAGNFSIETQQVQCSDNAMYSY
KYSENQGKTAGELNLTRLDAELGCVPDGGRNGCVFVKQVANTSYCSEPFY
LDQIKSLPEKMLFLTTELHFKPPSDLKIFARRALRTFLENIGSKAVLRRA
IYSGAQQTNCPFDIRKGEATIVPLAVIVVLAFVWGTPIVIFLSSFLLRKR
MFFDVSNPMDWGRQIVGTDEVAPSENLLLKKDEEQRTIVVISASAEETVV
CNI*

mRNA from alignment at tig00000945_pilon:97459..98520+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1119.t1 ID=Ggra1119.t1|Name=Ggra1119.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00000945_pilon:97459..98520+ (Gracilaria gracilis GNS1m male)
ATGGTGCTCATCGAACTTAAGTCCCCTTTCGTTAGTGTTATTGGCACTAT
CTTGGCTACGCTCTCTGAGATCGCTCTCATCTCCTCTCTATTAACTCTCA
ACGGCTTTTATGCGTGCAAACGTCTGCAGGCCGGTCGTTCTATCAGTATT
CGTTCTCATCTCAGGCGCATTTCCATCATCAACGTTCTCTCGCTCTTCAT
TTTTTTCAGTGTCGAGGTTGTTTTTGCCTTTTTCAACGATCCCTCTAGCT
TCTATCGCTCCGAAGTGCACAGCTGTATTAGCGTGACAAATTCTGCTCAG
GAAAGAGGTAATTCTCTCCAACCAACCAGAGCAAATGACATTTTCGTCGA
GTGCCGTGATATCGGTGAGGGAACGATCACTCAGTTTGCTGGCAACTTCA
GTATCGAAACCCAACAAGTGCAATGTTCTGACAACGCCATGTACAGTTAC
AAGTACAGCGAAAACCAAGGGAAAACCGCAGGTGAACTGAATCTCACTAG
ACTGGATGCCGAGCTGGGATGTGTCCCAGATGGCGGTCGAAACGGTTGCG
TATTCGTGAAACAGGTCGCCAATACTTCGTACTGCTCTGAACCCTTTTAC
TTGGATCAAATTAAGTCACTTCCAGAAAAGATGTTATTCTTGACAACAGA
ACTGCATTTCAAGCCTCCATCAGATTTAAAGATCTTTGCGAGAAGAGCGC
TAAGAACGTTCTTGGAAAACATCGGCAGTAAAGCTGTGTTGCGAAGAGCT
ATTTACAGCGGAGCACAACAAACGAACTGCCCCTTCGACATAAGGAAAGG
GGAAGCAACGATTGTGCCACTTGCAGTTATAGTAGTGCTTGCCTTTGTCT
GGGGAACACCTATAGTCATCTTTCTTTCATCTTTTCTTCTTCGCAAAAGA
ATGTTTTTCGACGTGAGCAATCCAATGGACTGGGGGAGGCAAATTGTCGG
TACTGATGAAGTTGCACCCAGTGAGAATCTGCTTCTCAAAAAGGATGAAG
AGCAAAGGACAATAGTGGTTATTTCTGCTTCAGCCGAAGAGACAGTTGTT
TGCAATATATGA

Coding sequence (CDS) from alignment at tig00000945_pilon:97459..98520+

>Ggra1119.t1 ID=Ggra1119.t1|Name=Ggra1119.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1062bp|location=Sequence derived from alignment at tig00000945_pilon:97459..98520+ (Gracilaria gracilis GNS1m male)
ATGGTGCTCATCGAACTTAAGTCCCCTTTCGTTAGTGTTATTGGCACTAT
CTTGGCTACGCTCTCTGAGATCGCTCTCATCTCCTCTCTATTAACTCTCA
ACGGCTTTTATGCGTGCAAACGTCTGCAGGCCGGTCGTTCTATCAGTATT
CGTTCTCATCTCAGGCGCATTTCCATCATCAACGTTCTCTCGCTCTTCAT
TTTTTTCAGTGTCGAGGTTGTTTTTGCCTTTTTCAACGATCCCTCTAGCT
TCTATCGCTCCGAAGTGCACAGCTGTATTAGCGTGACAAATTCTGCTCAG
GAAAGAGGTAATTCTCTCCAACCAACCAGAGCAAATGACATTTTCGTCGA
GTGCCGTGATATCGGTGAGGGAACGATCACTCAGTTTGCTGGCAACTTCA
GTATCGAAACCCAACAAGTGCAATGTTCTGACAACGCCATGTACAGTTAC
AAGTACAGCGAAAACCAAGGGAAAACCGCAGGTGAACTGAATCTCACTAG
ACTGGATGCCGAGCTGGGATGTGTCCCAGATGGCGGTCGAAACGGTTGCG
TATTCGTGAAACAGGTCGCCAATACTTCGTACTGCTCTGAACCCTTTTAC
TTGGATCAAATTAAGTCACTTCCAGAAAAGATGTTATTCTTGACAACAGA
ACTGCATTTCAAGCCTCCATCAGATTTAAAGATCTTTGCGAGAAGAGCGC
TAAGAACGTTCTTGGAAAACATCGGCAGTAAAGCTGTGTTGCGAAGAGCT
ATTTACAGCGGAGCACAACAAACGAACTGCCCCTTCGACATAAGGAAAGG
GGAAGCAACGATTGTGCCACTTGCAGTTATAGTAGTGCTTGCCTTTGTCT
GGGGAACACCTATAGTCATCTTTCTTTCATCTTTTCTTCTTCGCAAAAGA
ATGTTTTTCGACGTGAGCAATCCAATGGACTGGGGGAGGCAAATTGTCGG
TACTGATGAAGTTGCACCCAGTGAGAATCTGCTTCTCAAAAAGGATGAAG
AGCAAAGGACAATAGTGGTTATTTCTGCTTCAGCCGAAGAGACAGTTGTT
TGCAATATATGA