Ggra1118.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1118.t1
Unique Name	Ggra1118.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	678

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000945_pilon	contig	tig00000945_pilon:92654..94687 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4155.Migut.L00128.1.p
PFAMs	AIG1
Max annot lvl	35493\|Streptophyta
GOs	GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0016020,GO:0030246,GO:0031090,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0098588,GO:0098805
Evalue	4e-09
EggNOG OGs	290TZ@1\|root,2R7PE@2759\|Eukaryota,37K33@33090\|Viridiplantae,3GE4W@35493\|Streptophyta,44I1G@71274\|asterids
Description	AIG1 family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1118	Ggra1118	Gracilaria gracilis GNS1m male	gene	tig00000945_pilon 92654..94687 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1118.t1.start1	Ggra1118.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000945_pilon 92654..92656 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1118.t1.CDS1	Ggra1118.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000945_pilon 92654..94687 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1118.t1.exon1	Ggra1118.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000945_pilon 92654..94687 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1118.t1.stop1	Ggra1118.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000945_pilon 94685..94687 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1118.t1	Ggra1118.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000945_pilon 92654..94687 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000945_pilon:92654..94687+
coding sequence from alignment at tig00000945_pilon:92654..94687+

mRNA sequence

>Ggra1118.t1 ID=Ggra1118.t1|Name=Ggra1118.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp
MPCHICEDGPTDRLLSRLSFLHNYSPILSEPTWTLLKKPAAPENRLRQLQ
LNEWGSDADLLDPQYRCYRGVYICLDFLQSFVVAGHESAFITAKLFAEES
DESPPDLYVAGSCNLNLNDNSSLEALDTNEEQKNLVSDFIFDLYHIFDDL
QTGCKWQLVIDMTVSDNFRTPRTQSDANEVACLAIITAHLLLTLLDLPPR
FHHDLSFVKMISGSQYSLPVSNNTMIRIFARWPDVPFDPRSRVQTLTEEF
EANQAGVKQIVAAVSDLRITSETRNILLIGRTGSGKSHTGNWILDNICEN
CESRFKESSSGSMTSGVERLPLRNSWLAVWDTPGLDDSLGQDNKHLDEIE
RCMLEIGTINAVIICFDTAHRIDGKNVVNIAQYKRLIGSEMAGHVMLVVT
GQPKALIPRQRRSLIEAMRRHASLEVPDSHVFDLGPNADDLQGNSEAALR
TLRILCDGKPFKASYFDRLQRGLLEIENLSDCNQLQNARDILVHLSEQAL
IRKLQHPRRPFPLYVRPSLRNEIVLSDGCIHKLKDGGKRYVMHVLHLPEG
LKRSIFCRTLQALGRVGRADDSTAVVKLVREKRLVFMELESDERQEQTSI
LLRNICRIHYQLWKVDSALTDDMKANLRKAIGNDFTRTVSAFQSLREEPP
QPERANHGVGHRIPPSMRRRPRRDFKH*

spliced messenger RNA

>Ggra1118.t1 ID=Ggra1118.t1|Name=Ggra1118.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2034bp|location=Sequence derived from alignment at tig00000945_pilon:92654..94687+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTGCCACATTTGTGAAGACGGACCCACAGACCGACTTCTGTCACG
CTTGAGTTTTCTTCACAACTACTCACCCATACTTTCGGAGCCAACGTGGA
CTCTTCTTAAGAAACCCGCTGCCCCAGAAAACCGCCTCCGCCAATTGCAA
CTAAATGAGTGGGGGTCCGATGCAGATCTTCTGGATCCACAGTATCGATG
TTATCGAGGCGTTTATATTTGTCTAGACTTCCTACAGAGCTTTGTGGTCG
CTGGTCATGAAAGTGCTTTCATCACAGCAAAGTTATTTGCCGAAGAATCG
GATGAGTCTCCACCAGATTTGTATGTTGCCGGCTCATGTAACCTCAACTT
GAACGATAACTCGTCTCTAGAAGCACTTGACACAAATGAGGAGCAGAAAA
ATCTTGTTAGCGACTTCATATTCGACTTGTATCATATTTTCGACGATCTC
CAAACGGGGTGCAAGTGGCAGCTTGTGATTGATATGACGGTTAGCGACAA
CTTTCGAACACCAAGGACGCAATCCGATGCTAATGAAGTCGCCTGCCTTG
CTATCATTACGGCCCATCTCCTCCTCACTCTTCTCGACCTCCCACCCCGA
TTCCACCACGATCTTTCATTTGTCAAGATGATCTCTGGTTCCCAGTATTC
CCTTCCTGTGTCAAACAACACAATGATTCGAATCTTTGCTCGTTGGCCAG
ATGTACCGTTTGACCCACGTTCTAGAGTGCAGACCCTCACGGAAGAGTTC
GAAGCAAATCAAGCTGGTGTGAAACAGATTGTGGCGGCCGTTTCGGATCT
TAGGATCACTTCTGAGACACGTAATATTCTCTTGATCGGTCGCACAGGCT
CAGGAAAGTCACACACCGGCAACTGGATTCTCGACAACATCTGTGAAAAC
TGCGAGAGCCGCTTCAAAGAAAGCTCTTCTGGTTCCATGACAAGCGGTGT
AGAGCGTCTCCCACTGAGAAATTCGTGGCTGGCAGTGTGGGACACTCCAG
GTCTGGATGATTCTCTTGGGCAAGACAACAAGCATTTGGATGAAATCGAA
CGGTGTATGCTAGAAATTGGAACGATCAACGCAGTGATCATCTGTTTTGA
TACGGCACATCGAATAGACGGCAAAAATGTGGTAAACATTGCGCAATATA
AGCGTCTAATTGGTAGTGAGATGGCAGGTCATGTCATGCTCGTGGTTACT
GGTCAACCAAAAGCTCTGATACCGAGACAAAGGAGGTCTTTGATAGAAGC
CATGAGGAGGCATGCTTCCCTCGAAGTTCCTGACTCCCATGTTTTTGATC
TTGGTCCAAACGCCGACGATCTTCAGGGAAACAGTGAAGCGGCGTTGAGA
ACACTCAGGATACTGTGCGATGGAAAACCATTTAAGGCTAGTTATTTCGA
CCGACTGCAAAGAGGGCTCCTGGAAATTGAGAACTTGAGCGACTGCAACC
AACTTCAAAACGCTCGGGACATTCTAGTACATCTTTCTGAGCAAGCACTT
ATTCGAAAGTTGCAACATCCTCGTAGGCCTTTTCCACTTTATGTTCGGCC
TTCGTTGAGGAATGAAATTGTATTAAGCGATGGTTGCATTCACAAGTTAA
AGGATGGTGGCAAGCGATATGTAATGCATGTGCTCCATCTTCCGGAAGGA
CTCAAGAGATCCATCTTTTGTCGTACACTACAAGCCTTGGGACGAGTGGG
ACGGGCAGATGATTCGACAGCGGTTGTGAAGTTGGTACGAGAGAAACGGC
TTGTTTTCATGGAATTAGAATCGGACGAACGACAAGAGCAGACGAGCATT
TTGCTACGCAATATCTGTAGGATACACTACCAACTGTGGAAAGTGGACTC
CGCGCTAACTGATGACATGAAGGCAAACCTGCGAAAGGCCATAGGAAACG
ACTTCACTCGCACCGTATCCGCATTTCAGTCTCTCCGCGAAGAACCTCCA
CAGCCAGAAAGAGCCAATCATGGAGTTGGACACAGGATCCCTCCTAGTAT
GCGTAGGCGACCGAGACGTGATTTCAAACATTAA

protein sequence of Ggra1118.t1

>Ggra1118.t1 ID=Ggra1118.t1|Name=Ggra1118.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=678bp
MPCHICEDGPTDRLLSRLSFLHNYSPILSEPTWTLLKKPAAPENRLRQLQ
LNEWGSDADLLDPQYRCYRGVYICLDFLQSFVVAGHESAFITAKLFAEES
DESPPDLYVAGSCNLNLNDNSSLEALDTNEEQKNLVSDFIFDLYHIFDDL
QTGCKWQLVIDMTVSDNFRTPRTQSDANEVACLAIITAHLLLTLLDLPPR
FHHDLSFVKMISGSQYSLPVSNNTMIRIFARWPDVPFDPRSRVQTLTEEF
EANQAGVKQIVAAVSDLRITSETRNILLIGRTGSGKSHTGNWILDNICEN
CESRFKESSSGSMTSGVERLPLRNSWLAVWDTPGLDDSLGQDNKHLDEIE
RCMLEIGTINAVIICFDTAHRIDGKNVVNIAQYKRLIGSEMAGHVMLVVT
GQPKALIPRQRRSLIEAMRRHASLEVPDSHVFDLGPNADDLQGNSEAALR
TLRILCDGKPFKASYFDRLQRGLLEIENLSDCNQLQNARDILVHLSEQAL
IRKLQHPRRPFPLYVRPSLRNEIVLSDGCIHKLKDGGKRYVMHVLHLPEG
LKRSIFCRTLQALGRVGRADDSTAVVKLVREKRLVFMELESDERQEQTSI
LLRNICRIHYQLWKVDSALTDDMKANLRKAIGNDFTRTVSAFQSLREEPP
QPERANHGVGHRIPPSMRRRPRRDFKH*

mRNA from alignment at tig00000945_pilon:92654..94687+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1118.t1 ID=Ggra1118.t1|Name=Ggra1118.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2034bp|location=Sequence derived from alignment at tig00000945_pilon:92654..94687+ (Gracilaria gracilis GNS1m male)
ATGCCCTGCCACATTTGTGAAGACGGACCCACAGACCGACTTCTGTCACG
CTTGAGTTTTCTTCACAACTACTCACCCATACTTTCGGAGCCAACGTGGA
CTCTTCTTAAGAAACCCGCTGCCCCAGAAAACCGCCTCCGCCAATTGCAA
CTAAATGAGTGGGGGTCCGATGCAGATCTTCTGGATCCACAGTATCGATG
TTATCGAGGCGTTTATATTTGTCTAGACTTCCTACAGAGCTTTGTGGTCG
CTGGTCATGAAAGTGCTTTCATCACAGCAAAGTTATTTGCCGAAGAATCG
GATGAGTCTCCACCAGATTTGTATGTTGCCGGCTCATGTAACCTCAACTT
GAACGATAACTCGTCTCTAGAAGCACTTGACACAAATGAGGAGCAGAAAA
ATCTTGTTAGCGACTTCATATTCGACTTGTATCATATTTTCGACGATCTC
CAAACGGGGTGCAAGTGGCAGCTTGTGATTGATATGACGGTTAGCGACAA
CTTTCGAACACCAAGGACGCAATCCGATGCTAATGAAGTCGCCTGCCTTG
CTATCATTACGGCCCATCTCCTCCTCACTCTTCTCGACCTCCCACCCCGA
TTCCACCACGATCTTTCATTTGTCAAGATGATCTCTGGTTCCCAGTATTC
CCTTCCTGTGTCAAACAACACAATGATTCGAATCTTTGCTCGTTGGCCAG
ATGTACCGTTTGACCCACGTTCTAGAGTGCAGACCCTCACGGAAGAGTTC
GAAGCAAATCAAGCTGGTGTGAAACAGATTGTGGCGGCCGTTTCGGATCT
TAGGATCACTTCTGAGACACGTAATATTCTCTTGATCGGTCGCACAGGCT
CAGGAAAGTCACACACCGGCAACTGGATTCTCGACAACATCTGTGAAAAC
TGCGAGAGCCGCTTCAAAGAAAGCTCTTCTGGTTCCATGACAAGCGGTGT
AGAGCGTCTCCCACTGAGAAATTCGTGGCTGGCAGTGTGGGACACTCCAG
GTCTGGATGATTCTCTTGGGCAAGACAACAAGCATTTGGATGAAATCGAA
CGGTGTATGCTAGAAATTGGAACGATCAACGCAGTGATCATCTGTTTTGA
TACGGCACATCGAATAGACGGCAAAAATGTGGTAAACATTGCGCAATATA
AGCGTCTAATTGGTAGTGAGATGGCAGGTCATGTCATGCTCGTGGTTACT
GGTCAACCAAAAGCTCTGATACCGAGACAAAGGAGGTCTTTGATAGAAGC
CATGAGGAGGCATGCTTCCCTCGAAGTTCCTGACTCCCATGTTTTTGATC
TTGGTCCAAACGCCGACGATCTTCAGGGAAACAGTGAAGCGGCGTTGAGA
ACACTCAGGATACTGTGCGATGGAAAACCATTTAAGGCTAGTTATTTCGA
CCGACTGCAAAGAGGGCTCCTGGAAATTGAGAACTTGAGCGACTGCAACC
AACTTCAAAACGCTCGGGACATTCTAGTACATCTTTCTGAGCAAGCACTT
ATTCGAAAGTTGCAACATCCTCGTAGGCCTTTTCCACTTTATGTTCGGCC
TTCGTTGAGGAATGAAATTGTATTAAGCGATGGTTGCATTCACAAGTTAA
AGGATGGTGGCAAGCGATATGTAATGCATGTGCTCCATCTTCCGGAAGGA
CTCAAGAGATCCATCTTTTGTCGTACACTACAAGCCTTGGGACGAGTGGG
ACGGGCAGATGATTCGACAGCGGTTGTGAAGTTGGTACGAGAGAAACGGC
TTGTTTTCATGGAATTAGAATCGGACGAACGACAAGAGCAGACGAGCATT
TTGCTACGCAATATCTGTAGGATACACTACCAACTGTGGAAAGTGGACTC
CGCGCTAACTGATGACATGAAGGCAAACCTGCGAAAGGCCATAGGAAACG
ACTTCACTCGCACCGTATCCGCATTTCAGTCTCTCCGCGAAGAACCTCCA
CAGCCAGAAAGAGCCAATCATGGAGTTGGACACAGGATCCCTCCTAGTAT
GCGTAGGCGACCGAGACGTGATTTCAAACATTAA

Coding sequence (CDS) from alignment at tig00000945_pilon:92654..94687+

>Ggra1118.t1 ID=Ggra1118.t1|Name=Ggra1118.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2034bp|location=Sequence derived from alignment at tig00000945_pilon:92654..94687+ (Gracilaria gracilis GNS1m male)
ATGCCCTGCCACATTTGTGAAGACGGACCCACAGACCGACTTCTGTCACG
CTTGAGTTTTCTTCACAACTACTCACCCATACTTTCGGAGCCAACGTGGA
CTCTTCTTAAGAAACCCGCTGCCCCAGAAAACCGCCTCCGCCAATTGCAA
CTAAATGAGTGGGGGTCCGATGCAGATCTTCTGGATCCACAGTATCGATG
TTATCGAGGCGTTTATATTTGTCTAGACTTCCTACAGAGCTTTGTGGTCG
CTGGTCATGAAAGTGCTTTCATCACAGCAAAGTTATTTGCCGAAGAATCG
GATGAGTCTCCACCAGATTTGTATGTTGCCGGCTCATGTAACCTCAACTT
GAACGATAACTCGTCTCTAGAAGCACTTGACACAAATGAGGAGCAGAAAA
ATCTTGTTAGCGACTTCATATTCGACTTGTATCATATTTTCGACGATCTC
CAAACGGGGTGCAAGTGGCAGCTTGTGATTGATATGACGGTTAGCGACAA
CTTTCGAACACCAAGGACGCAATCCGATGCTAATGAAGTCGCCTGCCTTG
CTATCATTACGGCCCATCTCCTCCTCACTCTTCTCGACCTCCCACCCCGA
TTCCACCACGATCTTTCATTTGTCAAGATGATCTCTGGTTCCCAGTATTC
CCTTCCTGTGTCAAACAACACAATGATTCGAATCTTTGCTCGTTGGCCAG
ATGTACCGTTTGACCCACGTTCTAGAGTGCAGACCCTCACGGAAGAGTTC
GAAGCAAATCAAGCTGGTGTGAAACAGATTGTGGCGGCCGTTTCGGATCT
TAGGATCACTTCTGAGACACGTAATATTCTCTTGATCGGTCGCACAGGCT
CAGGAAAGTCACACACCGGCAACTGGATTCTCGACAACATCTGTGAAAAC
TGCGAGAGCCGCTTCAAAGAAAGCTCTTCTGGTTCCATGACAAGCGGTGT
AGAGCGTCTCCCACTGAGAAATTCGTGGCTGGCAGTGTGGGACACTCCAG
GTCTGGATGATTCTCTTGGGCAAGACAACAAGCATTTGGATGAAATCGAA
CGGTGTATGCTAGAAATTGGAACGATCAACGCAGTGATCATCTGTTTTGA
TACGGCACATCGAATAGACGGCAAAAATGTGGTAAACATTGCGCAATATA
AGCGTCTAATTGGTAGTGAGATGGCAGGTCATGTCATGCTCGTGGTTACT
GGTCAACCAAAAGCTCTGATACCGAGACAAAGGAGGTCTTTGATAGAAGC
CATGAGGAGGCATGCTTCCCTCGAAGTTCCTGACTCCCATGTTTTTGATC
TTGGTCCAAACGCCGACGATCTTCAGGGAAACAGTGAAGCGGCGTTGAGA
ACACTCAGGATACTGTGCGATGGAAAACCATTTAAGGCTAGTTATTTCGA
CCGACTGCAAAGAGGGCTCCTGGAAATTGAGAACTTGAGCGACTGCAACC
AACTTCAAAACGCTCGGGACATTCTAGTACATCTTTCTGAGCAAGCACTT
ATTCGAAAGTTGCAACATCCTCGTAGGCCTTTTCCACTTTATGTTCGGCC
TTCGTTGAGGAATGAAATTGTATTAAGCGATGGTTGCATTCACAAGTTAA
AGGATGGTGGCAAGCGATATGTAATGCATGTGCTCCATCTTCCGGAAGGA
CTCAAGAGATCCATCTTTTGTCGTACACTACAAGCCTTGGGACGAGTGGG
ACGGGCAGATGATTCGACAGCGGTTGTGAAGTTGGTACGAGAGAAACGGC
TTGTTTTCATGGAATTAGAATCGGACGAACGACAAGAGCAGACGAGCATT
TTGCTACGCAATATCTGTAGGATACACTACCAACTGTGGAAAGTGGACTC
CGCGCTAACTGATGACATGAAGGCAAACCTGCGAAAGGCCATAGGAAACG
ACTTCACTCGCACCGTATCCGCATTTCAGTCTCTCCGCGAAGAACCTCCA
CAGCCAGAAAGAGCCAATCATGGAGTTGGACACAGGATCCCTCCTAGTAT
GCGTAGGCGACCGAGACGTGATTTCAAACATTAA