Ggra1116.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1116.t2
Unique NameGgra1116.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length718
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000945_piloncontigtig00000945_pilon:83077..85392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog373994.Riv7116_5989
Preferred nameamgP
PFAMsAPH
Max annot lvl2|Bacteria
Evalue5.13e-15
EggNOG OGsCOG3173@1|root,COG3173@2|Bacteria
Descriptionvery-long-chain-acyl-CoA dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1116Ggra1116Gracilaria gracilis GNS1m malegenetig00000945_pilon 83077..88565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1116.t2Ggra1116.t2Gracilaria gracilis GNS1m malepolypeptidetig00000945_pilon 83077..85392 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1116.t2.stop1Ggra1116.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000945_pilon 83077..83079 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1116.t2.CDS1Ggra1116.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000945_pilon 83077..83964 -
Ggra1116.t2.CDS2Ggra1116.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000945_pilon 84127..85392 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1116.t2.exon1Ggra1116.t2.exon1Gracilaria gracilis GNS1m maleexontig00000945_pilon 83077..83964 -
Ggra1116.t2.exon2Ggra1116.t2.exon2Gracilaria gracilis GNS1m maleexontig00000945_pilon 84127..85392 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1116.t2.intron1Ggra1116.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000945_pilon 83965..84126 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1116.t2.start1Ggra1116.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000945_pilon 85390..85392 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1116.t2 ID=Ggra1116.t2|Name=Ggra1116.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=718bp
MHLGFTIVYLRKVYQTRAGFGHVRALVLFEVDPDCTDLKLPFGLVWTPKY
EATRITGQPRSPLVSNFLLEYSKRGVSVKEERLYPYSQTGWFKRAREWMS
LNLERYQEEEVMKVSQVTLNTQGSVLCATTRTNRKYFMKAVPPNGMNEEV
LVSCAMAIVFPDVFRKPIAVNYDRRWMLMSDYGIPLGHGDCLMSSKTGSQ
RMRKILLEWSVVQKRAIEKKGALVRLGVPVWGESFVLQEVQKMMGDPVWY
DMQKRGMNEDELLRFGDESEYKKSYTAYIKRLFGRLKGFDVPFSLVHGDL
NPVNVIIQDNQTCLFFDFSLTCVSIPFIDAIRFVSLCDGSKDDLDFYLEQ
WTEFESMDRLRDLLDVVDDLDGVLSLLILYQSYLTSEEVLRDSTRQELSF
CVCNTFGKYIENRREFIAKQAEWAPVLRTLELPNGTQYQTVLYYEQETKL
TDIASQVDVTVRLNSAPPENVGLGLARVLATFPQCERRWIRGAVIGSMPP
EPDGFVRLSQIDYHREGGLLRIPWWQQIVALLYAMGTTVVAIMVGVFDWG
DRGNWFERVSDSISTFGLLLFTVIGLVKLKSEDPNIIRHTILGQRVLRSE
DDVLRVRGIKNLIDLKKLMAFSSPFHKSENMFRWLDPQDCSFASARATGS
IKSYGGLLLWEFRKMGAILISDRVFRHVLNDGGDFLAIDTDFAVHIEHGA
RAVGPDYQLVPLEGIVK*
back to top

spliced messenger RNA

>Ggra1116.t2 ID=Ggra1116.t2|Name=Ggra1116.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2154bp|location=Sequence derived from alignment at tig00000945_pilon:83077..85392- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCTGGGCTTTACAATCGTGTATTTGAGAAAGGTTTATCAAACCCG
AGCTGGATTTGGTCATGTGAGAGCCCTTGTTCTTTTTGAAGTGGATCCGG
ACTGTACCGATCTTAAGCTGCCGTTCGGTCTGGTATGGACGCCCAAGTAT
GAGGCTACAAGAATTACGGGGCAGCCAAGATCACCGTTGGTTTCAAATTT
TCTTCTTGAGTACTCAAAGCGCGGCGTGAGCGTTAAGGAAGAACGTTTAT
ATCCATACTCGCAAACTGGGTGGTTTAAACGGGCGAGGGAGTGGATGTCC
TTGAATTTAGAAAGGTATCAAGAAGAGGAAGTGATGAAAGTGAGTCAAGT
GACTTTGAATACTCAGGGCAGTGTTCTATGTGCAACGACTCGAACCAATC
GTAAGTACTTCATGAAGGCTGTACCACCCAATGGAATGAACGAAGAAGTG
CTTGTTTCGTGCGCGATGGCAATTGTGTTCCCGGACGTATTTCGGAAACC
TATAGCTGTTAACTACGACAGAAGATGGATGCTTATGAGCGACTACGGTA
TTCCTCTAGGACATGGAGACTGTTTGATGAGCTCTAAAACGGGTTCGCAG
CGGATGCGGAAGATTCTATTGGAGTGGAGTGTTGTGCAAAAACGAGCCAT
TGAAAAGAAAGGTGCGCTCGTACGGCTTGGCGTTCCCGTGTGGGGCGAGT
CTTTTGTACTGCAAGAAGTGCAAAAAATGATGGGAGATCCTGTTTGGTAT
GATATGCAGAAGAGGGGAATGAATGAAGATGAACTCTTAAGGTTTGGAGA
TGAATCTGAGTACAAGAAAAGCTATACAGCATACATAAAGCGTCTTTTTG
GGAGGTTGAAGGGCTTTGATGTGCCGTTCTCGCTTGTACACGGAGACTTG
AACCCTGTGAATGTAATCATTCAGGATAACCAAACTTGCTTGTTCTTCGA
CTTCTCACTGACCTGTGTTTCGATACCCTTCATAGATGCGATTCGATTTG
TTAGTTTATGCGATGGTAGTAAGGATGATCTTGACTTTTATCTCGAGCAG
TGGACTGAGTTCGAAAGCATGGACCGGCTACGGGACTTACTCGACGTAGT
AGACGATCTCGATGGAGTGCTCAGTCTGTTGATACTGTATCAGAGTTATC
TGACGTCTGAGGAGGTTCTAAGGGATTCTACACGTCAAGAGCTCAGTTTT
TGTGTTTGCAATACTTTCGGCAAGTACATTGAGAACAGGAGGGAATTCAT
TGCCAAACAAGCGGAATGGGCTCCTGTGCTCCGCACTCTTGAGTTGCCCA
ATGGCACGCAGTACCAGACCGTACTATACTACGAACAGGAGACCAAGCTT
ACGGACATTGCCTCGCAAGTGGATGTGACAGTGCGCCTCAACAGCGCGCC
TCCCGAAAACGTCGGTCTCGGTCTCGCGCGCGTGCTGGCGACGTTCCCGC
AATGCGAGCGCCGCTGGATCCGCGGCGCCGTAATCGGTAGCATGCCGCCT
GAGCCCGACGGCTTCGTGCGGCTCTCGCAAATCGACTACCACCGCGAGGG
CGGCCTGCTCCGCATTCCCTGGTGGCAGCAAATCGTAGCGTTGCTGTACG
CGATGGGGACGACCGTGGTGGCCATAATGGTTGGCGTGTTCGACTGGGGG
GATCGCGGGAATTGGTTCGAGCGCGTTTCCGATTCGATCAGCACCTTCGG
TCTGCTGCTGTTCACCGTCATAGGCTTGGTCAAGCTCAAGAGCGAGGACC
CCAATATTATACGACACACGATTCTTGGCCAGCGCGTACTGCGTTCCGAG
GACGACGTGCTGCGGGTGCGGGGCATAAAAAATTTAATCGACCTCAAGAA
ACTGATGGCGTTTTCCTCACCCTTCCACAAGTCCGAGAACATGTTCAGGT
GGCTCGACCCGCAGGACTGCTCGTTCGCAAGCGCACGCGCCACTGGGTCC
ATTAAATCATATGGCGGCTTGCTGTTGTGGGAGTTCAGGAAGATGGGCGC
CATCCTCATCAGCGATCGGGTATTCAGACATGTGCTCAATGATGGTGGAG
ACTTTCTTGCCATTGACACCGATTTCGCGGTTCACATTGAACATGGCGCA
CGTGCGGTCGGACCTGATTACCAGCTGGTGCCGTTAGAAGGGATAGTAAA
GTGA
back to top

protein sequence of Ggra1116.t2

>Ggra1116.t2 ID=Ggra1116.t2|Name=Ggra1116.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=718bp
MHLGFTIVYLRKVYQTRAGFGHVRALVLFEVDPDCTDLKLPFGLVWTPKY
EATRITGQPRSPLVSNFLLEYSKRGVSVKEERLYPYSQTGWFKRAREWMS
LNLERYQEEEVMKVSQVTLNTQGSVLCATTRTNRKYFMKAVPPNGMNEEV
LVSCAMAIVFPDVFRKPIAVNYDRRWMLMSDYGIPLGHGDCLMSSKTGSQ
RMRKILLEWSVVQKRAIEKKGALVRLGVPVWGESFVLQEVQKMMGDPVWY
DMQKRGMNEDELLRFGDESEYKKSYTAYIKRLFGRLKGFDVPFSLVHGDL
NPVNVIIQDNQTCLFFDFSLTCVSIPFIDAIRFVSLCDGSKDDLDFYLEQ
WTEFESMDRLRDLLDVVDDLDGVLSLLILYQSYLTSEEVLRDSTRQELSF
CVCNTFGKYIENRREFIAKQAEWAPVLRTLELPNGTQYQTVLYYEQETKL
TDIASQVDVTVRLNSAPPENVGLGLARVLATFPQCERRWIRGAVIGSMPP
EPDGFVRLSQIDYHREGGLLRIPWWQQIVALLYAMGTTVVAIMVGVFDWG
DRGNWFERVSDSISTFGLLLFTVIGLVKLKSEDPNIIRHTILGQRVLRSE
DDVLRVRGIKNLIDLKKLMAFSSPFHKSENMFRWLDPQDCSFASARATGS
IKSYGGLLLWEFRKMGAILISDRVFRHVLNDGGDFLAIDTDFAVHIEHGA
RAVGPDYQLVPLEGIVK*
back to top

mRNA from alignment at tig00000945_pilon:83077..85392-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1116.t2 ID=Ggra1116.t2|Name=Ggra1116.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2316bp|location=Sequence derived from alignment at tig00000945_pilon:83077..85392- (Gracilaria gracilis GNS1m male)
ATGCATCTGGGCTTTACAATCGTGTATTTGAGAAAGGTTTATCAAACCCG
AGCTGGATTTGGTCATGTGAGAGCCCTTGTTCTTTTTGAAGTGGATCCGG
ACTGTACCGATCTTAAGCTGCCGTTCGGTCTGGTATGGACGCCCAAGTAT
GAGGCTACAAGAATTACGGGGCAGCCAAGATCACCGTTGGTTTCAAATTT
TCTTCTTGAGTACTCAAAGCGCGGCGTGAGCGTTAAGGAAGAACGTTTAT
ATCCATACTCGCAAACTGGGTGGTTTAAACGGGCGAGGGAGTGGATGTCC
TTGAATTTAGAAAGGTATCAAGAAGAGGAAGTGATGAAAGTGAGTCAAGT
GACTTTGAATACTCAGGGCAGTGTTCTATGTGCAACGACTCGAACCAATC
GTAAGTACTTCATGAAGGCTGTACCACCCAATGGAATGAACGAAGAAGTG
CTTGTTTCGTGCGCGATGGCAATTGTGTTCCCGGACGTATTTCGGAAACC
TATAGCTGTTAACTACGACAGAAGATGGATGCTTATGAGCGACTACGGTA
TTCCTCTAGGACATGGAGACTGTTTGATGAGCTCTAAAACGGGTTCGCAG
CGGATGCGGAAGATTCTATTGGAGTGGAGTGTTGTGCAAAAACGAGCCAT
TGAAAAGAAAGGTGCGCTCGTACGGCTTGGCGTTCCCGTGTGGGGCGAGT
CTTTTGTACTGCAAGAAGTGCAAAAAATGATGGGAGATCCTGTTTGGTAT
GATATGCAGAAGAGGGGAATGAATGAAGATGAACTCTTAAGGTTTGGAGA
TGAATCTGAGTACAAGAAAAGCTATACAGCATACATAAAGCGTCTTTTTG
GGAGGTTGAAGGGCTTTGATGTGCCGTTCTCGCTTGTACACGGAGACTTG
AACCCTGTGAATGTAATCATTCAGGATAACCAAACTTGCTTGTTCTTCGA
CTTCTCACTGACCTGTGTTTCGATACCCTTCATAGATGCGATTCGATTTG
TTAGTTTATGCGATGGTAGTAAGGATGATCTTGACTTTTATCTCGAGCAG
TGGACTGAGTTCGAAAGCATGGACCGGCTACGGGACTTACTCGACGTAGT
AGACGATCTCGATGGAGTGCTCAGTCTGTTGATACTGTATCAGAGTTATC
TGACGTCTGAGGAGGTTCTAAGGGATTCTACACGTCAAGAGCTCAGTTTT
TGTGTTTGCAATACTTTCGGCAAGTACATTGAGAACAGGAGGGAATTCAT
TGCCAAACAAGCGGAAGTGTGAACATCTTAAGTACTGAAGGCGAGACCCC
ATCAACTACACAAATTTATTGAGAGGCTTCCATTGTCGAGCGCCAAACCC
TTTGTCGTTGTCTTAGAGTTTCCTTTTAACGTGAATCGGCTCGCTGTGAC
CGTCGTTGGGAGTGCTATTCGTCAGCAGTGGGCTCCTGTGCTCCGCACTC
TTGAGTTGCCCAATGGCACGCAGTACCAGACCGTACTATACTACGAACAG
GAGACCAAGCTTACGGACATTGCCTCGCAAGTGGATGTGACAGTGCGCCT
CAACAGCGCGCCTCCCGAAAACGTCGGTCTCGGTCTCGCGCGCGTGCTGG
CGACGTTCCCGCAATGCGAGCGCCGCTGGATCCGCGGCGCCGTAATCGGT
AGCATGCCGCCTGAGCCCGACGGCTTCGTGCGGCTCTCGCAAATCGACTA
CCACCGCGAGGGCGGCCTGCTCCGCATTCCCTGGTGGCAGCAAATCGTAG
CGTTGCTGTACGCGATGGGGACGACCGTGGTGGCCATAATGGTTGGCGTG
TTCGACTGGGGGGATCGCGGGAATTGGTTCGAGCGCGTTTCCGATTCGAT
CAGCACCTTCGGTCTGCTGCTGTTCACCGTCATAGGCTTGGTCAAGCTCA
AGAGCGAGGACCCCAATATTATACGACACACGATTCTTGGCCAGCGCGTA
CTGCGTTCCGAGGACGACGTGCTGCGGGTGCGGGGCATAAAAAATTTAAT
CGACCTCAAGAAACTGATGGCGTTTTCCTCACCCTTCCACAAGTCCGAGA
ACATGTTCAGGTGGCTCGACCCGCAGGACTGCTCGTTCGCAAGCGCACGC
GCCACTGGGTCCATTAAATCATATGGCGGCTTGCTGTTGTGGGAGTTCAG
GAAGATGGGCGCCATCCTCATCAGCGATCGGGTATTCAGACATGTGCTCA
ATGATGGTGGAGACTTTCTTGCCATTGACACCGATTTCGCGGTTCACATT
GAACATGGCGCACGTGCGGTCGGACCTGATTACCAGCTGGTGCCGTTAGA
AGGGATAGTAAAGTGA
back to top

Coding sequence (CDS) from alignment at tig00000945_pilon:83077..85392-

>Ggra1116.t2 ID=Ggra1116.t2|Name=Ggra1116.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2154bp|location=Sequence derived from alignment at tig00000945_pilon:83077..85392- (Gracilaria gracilis GNS1m male)
ATGCATCTGGGCTTTACAATCGTGTATTTGAGAAAGGTTTATCAAACCCG
AGCTGGATTTGGTCATGTGAGAGCCCTTGTTCTTTTTGAAGTGGATCCGG
ACTGTACCGATCTTAAGCTGCCGTTCGGTCTGGTATGGACGCCCAAGTAT
GAGGCTACAAGAATTACGGGGCAGCCAAGATCACCGTTGGTTTCAAATTT
TCTTCTTGAGTACTCAAAGCGCGGCGTGAGCGTTAAGGAAGAACGTTTAT
ATCCATACTCGCAAACTGGGTGGTTTAAACGGGCGAGGGAGTGGATGTCC
TTGAATTTAGAAAGGTATCAAGAAGAGGAAGTGATGAAAGTGAGTCAAGT
GACTTTGAATACTCAGGGCAGTGTTCTATGTGCAACGACTCGAACCAATC
GTAAGTACTTCATGAAGGCTGTACCACCCAATGGAATGAACGAAGAAGTG
CTTGTTTCGTGCGCGATGGCAATTGTGTTCCCGGACGTATTTCGGAAACC
TATAGCTGTTAACTACGACAGAAGATGGATGCTTATGAGCGACTACGGTA
TTCCTCTAGGACATGGAGACTGTTTGATGAGCTCTAAAACGGGTTCGCAG
CGGATGCGGAAGATTCTATTGGAGTGGAGTGTTGTGCAAAAACGAGCCAT
TGAAAAGAAAGGTGCGCTCGTACGGCTTGGCGTTCCCGTGTGGGGCGAGT
CTTTTGTACTGCAAGAAGTGCAAAAAATGATGGGAGATCCTGTTTGGTAT
GATATGCAGAAGAGGGGAATGAATGAAGATGAACTCTTAAGGTTTGGAGA
TGAATCTGAGTACAAGAAAAGCTATACAGCATACATAAAGCGTCTTTTTG
GGAGGTTGAAGGGCTTTGATGTGCCGTTCTCGCTTGTACACGGAGACTTG
AACCCTGTGAATGTAATCATTCAGGATAACCAAACTTGCTTGTTCTTCGA
CTTCTCACTGACCTGTGTTTCGATACCCTTCATAGATGCGATTCGATTTG
TTAGTTTATGCGATGGTAGTAAGGATGATCTTGACTTTTATCTCGAGCAG
TGGACTGAGTTCGAAAGCATGGACCGGCTACGGGACTTACTCGACGTAGT
AGACGATCTCGATGGAGTGCTCAGTCTGTTGATACTGTATCAGAGTTATC
TGACGTCTGAGGAGGTTCTAAGGGATTCTACACGTCAAGAGCTCAGTTTT
TGTGTTTGCAATACTTTCGGCAAGTACATTGAGAACAGGAGGGAATTCAT
TGCCAAACAAGCGGAATGGGCTCCTGTGCTCCGCACTCTTGAGTTGCCCA
ATGGCACGCAGTACCAGACCGTACTATACTACGAACAGGAGACCAAGCTT
ACGGACATTGCCTCGCAAGTGGATGTGACAGTGCGCCTCAACAGCGCGCC
TCCCGAAAACGTCGGTCTCGGTCTCGCGCGCGTGCTGGCGACGTTCCCGC
AATGCGAGCGCCGCTGGATCCGCGGCGCCGTAATCGGTAGCATGCCGCCT
GAGCCCGACGGCTTCGTGCGGCTCTCGCAAATCGACTACCACCGCGAGGG
CGGCCTGCTCCGCATTCCCTGGTGGCAGCAAATCGTAGCGTTGCTGTACG
CGATGGGGACGACCGTGGTGGCCATAATGGTTGGCGTGTTCGACTGGGGG
GATCGCGGGAATTGGTTCGAGCGCGTTTCCGATTCGATCAGCACCTTCGG
TCTGCTGCTGTTCACCGTCATAGGCTTGGTCAAGCTCAAGAGCGAGGACC
CCAATATTATACGACACACGATTCTTGGCCAGCGCGTACTGCGTTCCGAG
GACGACGTGCTGCGGGTGCGGGGCATAAAAAATTTAATCGACCTCAAGAA
ACTGATGGCGTTTTCCTCACCCTTCCACAAGTCCGAGAACATGTTCAGGT
GGCTCGACCCGCAGGACTGCTCGTTCGCAAGCGCACGCGCCACTGGGTCC
ATTAAATCATATGGCGGCTTGCTGTTGTGGGAGTTCAGGAAGATGGGCGC
CATCCTCATCAGCGATCGGGTATTCAGACATGTGCTCAATGATGGTGGAG
ACTTTCTTGCCATTGACACCGATTTCGCGGTTCACATTGAACATGGCGCA
CGTGCGGTCGGACCTGATTACCAGCTGGTGCCGTTAGAAGGGATAGTAAA
GTGA
back to top