Ggra11148.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11148.t1
Unique NameGgra11148.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length136
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000846_piloncontigtig00000846_pilon:1600..2103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4081.Solyc09g098180.2.1
PFAMsPirin,Pirin_C
Max annot lvl35493|Streptophyta
KEGG koko:K06911
GOsGO:0001101,GO:0003674,GO:0004857,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009637,GO:0009719,GO:0009725,GO:0009737,GO:0009738,GO:0009755,GO:0009785,GO:0009892,GO:0009987,GO:0010033,GO:0010466,GO:0010605,GO:0016020,GO:0019222,GO:0023052,GO:0030162,GO:0030234,GO:0030414,GO:0030522,GO:0031323,GO:0031324,GO:0032268,GO:0032269,GO:0032870,GO:0033993,GO:0042221,GO:0042742,GO:0043086,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044092,GO:0044424,GO:0044444,GO:0044464,GO:0045861,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0051704,GO:0051707,GO:0051716,GO:0052547,GO:0060255,GO:0061134,GO:0065007,GO:0065009,GO:0070887,GO:0071214,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071478,GO:0071482,GO:0071483,GO:0071495,GO:0071944,GO:0080090,GO:0097305,GO:0097306,GO:0098542,GO:0098772,GO:0104004,GO:1901700,GO:1901701
Evalue2.3e-47
EggNOG OGsCOG1741@1|root,2QQ5A@2759|Eukaryota,37REZ@33090|Viridiplantae,3G8XY@35493|Streptophyta,44E2W@71274|asterids
DescriptionPirin
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11148Ggra11148Gracilaria gracilis GNS1m malegenetig00000846_pilon 1600..2103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11148.t1Ggra11148.t1Gracilaria gracilis GNS1m malepolypeptidetig00000846_pilon 1600..2103 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11148.t1.start1Ggra11148.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000846_pilon 1600..1602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11148.t1.CDS1Ggra11148.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000846_pilon 1600..1813 +
Ggra11148.t1.CDS2Ggra11148.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000846_pilon 1910..2103 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11148.t1.exon1Ggra11148.t1.exon1Gracilaria gracilis GNS1m maleexontig00000846_pilon 1600..1813 +
Ggra11148.t1.exon2Ggra11148.t1.exon2Gracilaria gracilis GNS1m maleexontig00000846_pilon 1910..2103 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11148.t1.intron1Ggra11148.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000846_pilon 1814..1909 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11148.t1.stop1Ggra11148.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000846_pilon 2101..2103 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11148.t1 ID=Ggra11148.t1|Name=Ggra11148.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=136bp
MQTVTYMLEGAFRHEDNKGHAGTIGVGDLQWMTAGRGIVHGEMPATEGSN
IGLKLWVNLAANDKMTKPQYQGLLAEDVPLAKNEDGSIEVKVIAGKCLDV
ESKVFTQTPTLYWYVRMLKGATFEERIPEQYNTFI*
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spliced messenger RNA

>Ggra11148.t1 ID=Ggra11148.t1|Name=Ggra11148.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=408bp|location=Sequence derived from alignment at tig00000846_pilon:1600..2103+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGACCGTCACCTACATGCTCGAGGGAGCCTTCCGTCATGAGGATAA
CAAAGGCCATGCCGGTACTATTGGAGTGGGTGATTTGCAGTGGATGACCG
CCGGTCGTGGCATTGTTCACGGTGAAATGCCTGCTACGGAAGGTAGCAAC
ATTGGATTGAAACTATGGGTTAATCTTGCCGCGAACGATAAGATGACAAA
GCCACAGTATCAAGGACTTTTGGCGGAGGATGTGCCTTTGGCCAAGAACG
AAGACGGCTCGATCGAAGTCAAGGTCATTGCTGGTAAATGCCTTGATGTT
GAAAGCAAGGTGTTCACGCAAACACCAACCCTGTATTGGTATGTGAGAAT
GCTGAAGGGTGCTACTTTTGAGGAACGGATACCTGAACAATACAATACCT
TCATCTAA
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protein sequence of Ggra11148.t1

>Ggra11148.t1 ID=Ggra11148.t1|Name=Ggra11148.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=136bp
MQTVTYMLEGAFRHEDNKGHAGTIGVGDLQWMTAGRGIVHGEMPATEGSN
IGLKLWVNLAANDKMTKPQYQGLLAEDVPLAKNEDGSIEVKVIAGKCLDV
ESKVFTQTPTLYWYVRMLKGATFEERIPEQYNTFI*
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mRNA from alignment at tig00000846_pilon:1600..2103+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11148.t1 ID=Ggra11148.t1|Name=Ggra11148.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=504bp|location=Sequence derived from alignment at tig00000846_pilon:1600..2103+ (Gracilaria gracilis GNS1m male)
ATGCAGACCGTCACCTACATGCTCGAGGGAGCCTTCCGTCATGAGGATAA
CAAAGGCCATGCCGGTACTATTGGAGTGGGTGATTTGCAGTGGATGACCG
CCGGTCGTGGCATTGTTCACGGTGAAATGCCTGCTACGGAAGGTAGCAAC
ATTGGATTGAAACTATGGGTTAATCTTGCCGCGAACGATAAGATGACAAA
GCCACAGTATCAAGGTAAGTTTTGCGAAGCGTATACAGATCACTTCGCAA
ATTAGAGGAGTGTTGCATTGTTGATACCTAACGTTAATGCTTCTAGTCTC
CATGTTGCAGGACTTTTGGCGGAGGATGTGCCTTTGGCCAAGAACGAAGA
CGGCTCGATCGAAGTCAAGGTCATTGCTGGTAAATGCCTTGATGTTGAAA
GCAAGGTGTTCACGCAAACACCAACCCTGTATTGGTATGTGAGAATGCTG
AAGGGTGCTACTTTTGAGGAACGGATACCTGAACAATACAATACCTTCAT
CTAA
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Coding sequence (CDS) from alignment at tig00000846_pilon:1600..2103+

>Ggra11148.t1 ID=Ggra11148.t1|Name=Ggra11148.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=408bp|location=Sequence derived from alignment at tig00000846_pilon:1600..2103+ (Gracilaria gracilis GNS1m male)
ATGCAGACCGTCACCTACATGCTCGAGGGAGCCTTCCGTCATGAGGATAA
CAAAGGCCATGCCGGTACTATTGGAGTGGGTGATTTGCAGTGGATGACCG
CCGGTCGTGGCATTGTTCACGGTGAAATGCCTGCTACGGAAGGTAGCAAC
ATTGGATTGAAACTATGGGTTAATCTTGCCGCGAACGATAAGATGACAAA
GCCACAGTATCAAGGACTTTTGGCGGAGGATGTGCCTTTGGCCAAGAACG
AAGACGGCTCGATCGAAGTCAAGGTCATTGCTGGTAAATGCCTTGATGTT
GAAAGCAAGGTGTTCACGCAAACACCAACCCTGTATTGGTATGTGAGAAT
GCTGAAGGGTGCTACTTTTGAGGAACGGATACCTGAACAATACAATACCT
TCATCTAA
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