Ggra11141.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11141.t1
Unique NameGgra11141.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:117803..118621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123270.ATUR01000002_gene2326
Max annot lvl204457|Sphingomonadales
Evalue9.81e-65
EggNOG OGsCOG2102@1|root,COG2102@2|Bacteria,1R97Y@1224|Proteobacteria,2VCJ1@28211|Alphaproteobacteria,2KBXQ@204457|Sphingomonadales
Descriptionof PP-loop superfamily
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11141Ggra11141Gracilaria gracilis GNS1m malegenetig00000110_pilon 117803..118621 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11141.t1.stop1Ggra11141.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000110_pilon 117803..117805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11141.t1.CDS1Ggra11141.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000110_pilon 117803..118621 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11141.t1.exon1Ggra11141.t1.exon1Gracilaria gracilis GNS1m maleexontig00000110_pilon 117803..118621 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11141.t1.start1Ggra11141.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000110_pilon 118619..118621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11141.t1Ggra11141.t1Gracilaria gracilis GNS1m malepolypeptidetig00000110_pilon 117803..118621 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11141.t1 ID=Ggra11141.t1|Name=Ggra11141.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=273bp
MTKPVPCQMVPLDIEELHQAACRAKQSHYIDPNTKLMVFTSYYLSKRKCC
GCGCRHCPYKPRTQPHQTSRLLHGNFDDLPPAVDVLFWSGGKDSYLAFRT
MQRAAVRPVILLTTFDAVSEIVAHQEVSIDKIVHQAKLLNVPLLGIPVEG
GAYIRLVAAGLDRLRDHGVEIMRVAFGDLHLQHVRNWRESELTALGAQLF
YPIWGVPYDSLLKELEDSKATIRISAVDRDRVALKYVEVGDVFSSRFVKL
LPDEIDRFGENGEFHTLVELWR*
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spliced messenger RNA

>Ggra11141.t1 ID=Ggra11141.t1|Name=Ggra11141.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000110_pilon:117803..118621- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAAACCCGTGCCCTGTCAGATGGTTCCACTTGACATCGAGGAACT
GCACCAAGCAGCTTGCAGAGCTAAACAGTCTCACTACATTGACCCCAATA
CGAAACTCATGGTTTTCACGTCGTATTATCTTTCAAAGCGCAAATGCTGC
GGATGTGGCTGTCGCCATTGTCCATACAAGCCGCGAACACAGCCTCACCA
AACCTCTCGTCTGCTTCACGGTAATTTTGATGATCTGCCTCCAGCAGTTG
ACGTCCTCTTCTGGTCGGGGGGCAAAGATAGTTATCTGGCCTTTCGAACC
ATGCAACGCGCCGCAGTGCGACCAGTCATTCTGCTTACTACTTTTGACGC
CGTCTCTGAAATTGTTGCCCATCAGGAAGTCTCAATAGACAAGATAGTAC
ATCAAGCCAAACTTCTAAATGTCCCGCTTCTTGGAATTCCCGTCGAAGGG
GGTGCTTATATTCGCCTCGTCGCAGCTGGCTTGGATCGCCTGCGGGATCA
TGGAGTTGAAATTATGCGTGTTGCATTCGGCGATTTGCATCTCCAGCATG
TCAGAAACTGGAGGGAGAGTGAGCTCACTGCTCTCGGGGCGCAACTTTTT
TATCCTATTTGGGGTGTTCCCTACGATTCTTTGCTAAAGGAACTAGAGGA
TTCTAAAGCTACCATTCGCATTAGTGCGGTAGATCGAGATCGTGTTGCTT
TGAAATACGTTGAAGTTGGCGACGTATTTTCCTCTCGTTTTGTGAAGCTT
CTGCCAGATGAGATCGACCGTTTTGGTGAAAATGGAGAGTTTCACACGTT
AGTTGAGTTATGGAGGTAG
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protein sequence of Ggra11141.t1

>Ggra11141.t1 ID=Ggra11141.t1|Name=Ggra11141.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=273bp
MTKPVPCQMVPLDIEELHQAACRAKQSHYIDPNTKLMVFTSYYLSKRKCC
GCGCRHCPYKPRTQPHQTSRLLHGNFDDLPPAVDVLFWSGGKDSYLAFRT
MQRAAVRPVILLTTFDAVSEIVAHQEVSIDKIVHQAKLLNVPLLGIPVEG
GAYIRLVAAGLDRLRDHGVEIMRVAFGDLHLQHVRNWRESELTALGAQLF
YPIWGVPYDSLLKELEDSKATIRISAVDRDRVALKYVEVGDVFSSRFVKL
LPDEIDRFGENGEFHTLVELWR*
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mRNA from alignment at tig00000110_pilon:117803..118621-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11141.t1 ID=Ggra11141.t1|Name=Ggra11141.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000110_pilon:117803..118621- (Gracilaria gracilis GNS1m male)
ATGACCAAACCCGTGCCCTGTCAGATGGTTCCACTTGACATCGAGGAACT
GCACCAAGCAGCTTGCAGAGCTAAACAGTCTCACTACATTGACCCCAATA
CGAAACTCATGGTTTTCACGTCGTATTATCTTTCAAAGCGCAAATGCTGC
GGATGTGGCTGTCGCCATTGTCCATACAAGCCGCGAACACAGCCTCACCA
AACCTCTCGTCTGCTTCACGGTAATTTTGATGATCTGCCTCCAGCAGTTG
ACGTCCTCTTCTGGTCGGGGGGCAAAGATAGTTATCTGGCCTTTCGAACC
ATGCAACGCGCCGCAGTGCGACCAGTCATTCTGCTTACTACTTTTGACGC
CGTCTCTGAAATTGTTGCCCATCAGGAAGTCTCAATAGACAAGATAGTAC
ATCAAGCCAAACTTCTAAATGTCCCGCTTCTTGGAATTCCCGTCGAAGGG
GGTGCTTATATTCGCCTCGTCGCAGCTGGCTTGGATCGCCTGCGGGATCA
TGGAGTTGAAATTATGCGTGTTGCATTCGGCGATTTGCATCTCCAGCATG
TCAGAAACTGGAGGGAGAGTGAGCTCACTGCTCTCGGGGCGCAACTTTTT
TATCCTATTTGGGGTGTTCCCTACGATTCTTTGCTAAAGGAACTAGAGGA
TTCTAAAGCTACCATTCGCATTAGTGCGGTAGATCGAGATCGTGTTGCTT
TGAAATACGTTGAAGTTGGCGACGTATTTTCCTCTCGTTTTGTGAAGCTT
CTGCCAGATGAGATCGACCGTTTTGGTGAAAATGGAGAGTTTCACACGTT
AGTTGAGTTATGGAGGTAG
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Coding sequence (CDS) from alignment at tig00000110_pilon:117803..118621-

>Ggra11141.t1 ID=Ggra11141.t1|Name=Ggra11141.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=819bp|location=Sequence derived from alignment at tig00000110_pilon:117803..118621- (Gracilaria gracilis GNS1m male)
ATGACCAAACCCGTGCCCTGTCAGATGGTTCCACTTGACATCGAGGAACT
GCACCAAGCAGCTTGCAGAGCTAAACAGTCTCACTACATTGACCCCAATA
CGAAACTCATGGTTTTCACGTCGTATTATCTTTCAAAGCGCAAATGCTGC
GGATGTGGCTGTCGCCATTGTCCATACAAGCCGCGAACACAGCCTCACCA
AACCTCTCGTCTGCTTCACGGTAATTTTGATGATCTGCCTCCAGCAGTTG
ACGTCCTCTTCTGGTCGGGGGGCAAAGATAGTTATCTGGCCTTTCGAACC
ATGCAACGCGCCGCAGTGCGACCAGTCATTCTGCTTACTACTTTTGACGC
CGTCTCTGAAATTGTTGCCCATCAGGAAGTCTCAATAGACAAGATAGTAC
ATCAAGCCAAACTTCTAAATGTCCCGCTTCTTGGAATTCCCGTCGAAGGG
GGTGCTTATATTCGCCTCGTCGCAGCTGGCTTGGATCGCCTGCGGGATCA
TGGAGTTGAAATTATGCGTGTTGCATTCGGCGATTTGCATCTCCAGCATG
TCAGAAACTGGAGGGAGAGTGAGCTCACTGCTCTCGGGGCGCAACTTTTT
TATCCTATTTGGGGTGTTCCCTACGATTCTTTGCTAAAGGAACTAGAGGA
TTCTAAAGCTACCATTCGCATTAGTGCGGTAGATCGAGATCGTGTTGCTT
TGAAATACGTTGAAGTTGGCGACGTATTTTCCTCTCGTTTTGTGAAGCTT
CTGCCAGATGAGATCGACCGTTTTGGTGAAAATGGAGAGTTTCACACGTT
AGTTGAGTTATGGAGGTAG
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