Ggra11137.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11137.t1
Unique NameGgra11137.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:108299..109042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog218851.Aquca_029_00088.1
PFAMsPeptidase_C15
Max annot lvl35493|Streptophyta
KEGG koko:K01304
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Evalue2.11e-50
EggNOG OGsCOG2039@1|root,KOG4755@2759|Eukaryota,37KK7@33090|Viridiplantae,3G9YI@35493|Streptophyta
EC3.4.19.3
DescriptionPyrrolidone-carboxylate peptidase
COG categoryO
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11137Ggra11137Gracilaria gracilis GNS1m malegenetig00000110_pilon 108299..109042 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11137.t1.start1Ggra11137.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000110_pilon 108299..108301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11137.t1.CDS1Ggra11137.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000110_pilon 108299..109042 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11137.t1.exon1Ggra11137.t1.exon1Gracilaria gracilis GNS1m maleexontig00000110_pilon 108299..109042 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11137.t1.stop1Ggra11137.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000110_pilon 109040..109042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11137.t1Ggra11137.t1Gracilaria gracilis GNS1m malepolypeptidetig00000110_pilon 108299..109042 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11137.t1 ID=Ggra11137.t1|Name=Ggra11137.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=248bp
MGTVPDFSATLLEQPAITSSTADEDSKVTEFHLTGFSRFHNVPVNPTQSI
IEALPAYLASHPLQSSVILASTNVLKVAAETTRVQLEALYKQLDNPSHSA
LTLRRRSDRRVVFIHMGVNMRAMNFELEHQARNEATFSCPDELGWTPIKR
PIDKNNSDVLSVRRTSLCLEKLAEELKRQSFKVQLSTDAGRFVCNWVYYI
SLMLAEVQGACSLFVHVPPVSVCPIDQQVRFIAALLQCIATMPYATA*
back to top

spliced messenger RNA

>Ggra11137.t1 ID=Ggra11137.t1|Name=Ggra11137.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000110_pilon:108299..109042+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCACTGTGCCCGACTTCTCAGCAACCCTTTTGGAGCAACCGGCCAT
AACCTCCTCAACCGCCGATGAGGATTCCAAGGTAACCGAGTTTCACCTTA
CAGGCTTCTCTCGCTTCCATAATGTACCGGTAAATCCCACGCAGAGCATA
ATAGAAGCGCTTCCGGCTTATCTCGCCTCACATCCGTTGCAGTCAAGTGT
GATTTTGGCGTCCACAAATGTACTCAAAGTGGCCGCAGAAACGACCAGGG
TTCAGCTAGAGGCATTGTATAAACAGCTCGATAACCCGAGTCATTCCGCC
TTAACATTACGCCGCCGTTCCGATAGACGCGTCGTCTTTATTCACATGGG
TGTCAACATGCGCGCGATGAATTTCGAACTTGAGCATCAAGCCCGCAACG
AAGCGACCTTCTCTTGCCCCGACGAGCTCGGGTGGACACCCATTAAGCGC
CCGATCGACAAGAACAACAGCGACGTACTGTCCGTTCGCAGAACCTCTCT
CTGCCTAGAAAAACTGGCTGAGGAACTCAAACGCCAAAGCTTCAAGGTGC
AACTCTCCACAGACGCAGGGCGTTTCGTTTGCAACTGGGTCTATTACATC
TCGCTCATGCTTGCCGAAGTTCAAGGCGCGTGTTCGCTCTTCGTACATGT
ACCACCAGTGTCGGTGTGCCCAATCGATCAACAAGTCCGATTCATCGCTG
CACTGCTTCAGTGCATCGCAACAATGCCCTATGCAACTGCTTAA
back to top

protein sequence of Ggra11137.t1

>Ggra11137.t1 ID=Ggra11137.t1|Name=Ggra11137.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=248bp
MGTVPDFSATLLEQPAITSSTADEDSKVTEFHLTGFSRFHNVPVNPTQSI
IEALPAYLASHPLQSSVILASTNVLKVAAETTRVQLEALYKQLDNPSHSA
LTLRRRSDRRVVFIHMGVNMRAMNFELEHQARNEATFSCPDELGWTPIKR
PIDKNNSDVLSVRRTSLCLEKLAEELKRQSFKVQLSTDAGRFVCNWVYYI
SLMLAEVQGACSLFVHVPPVSVCPIDQQVRFIAALLQCIATMPYATA*
back to top

mRNA from alignment at tig00000110_pilon:108299..109042+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11137.t1 ID=Ggra11137.t1|Name=Ggra11137.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000110_pilon:108299..109042+ (Gracilaria gracilis GNS1m male)
ATGGGCACTGTGCCCGACTTCTCAGCAACCCTTTTGGAGCAACCGGCCAT
AACCTCCTCAACCGCCGATGAGGATTCCAAGGTAACCGAGTTTCACCTTA
CAGGCTTCTCTCGCTTCCATAATGTACCGGTAAATCCCACGCAGAGCATA
ATAGAAGCGCTTCCGGCTTATCTCGCCTCACATCCGTTGCAGTCAAGTGT
GATTTTGGCGTCCACAAATGTACTCAAAGTGGCCGCAGAAACGACCAGGG
TTCAGCTAGAGGCATTGTATAAACAGCTCGATAACCCGAGTCATTCCGCC
TTAACATTACGCCGCCGTTCCGATAGACGCGTCGTCTTTATTCACATGGG
TGTCAACATGCGCGCGATGAATTTCGAACTTGAGCATCAAGCCCGCAACG
AAGCGACCTTCTCTTGCCCCGACGAGCTCGGGTGGACACCCATTAAGCGC
CCGATCGACAAGAACAACAGCGACGTACTGTCCGTTCGCAGAACCTCTCT
CTGCCTAGAAAAACTGGCTGAGGAACTCAAACGCCAAAGCTTCAAGGTGC
AACTCTCCACAGACGCAGGGCGTTTCGTTTGCAACTGGGTCTATTACATC
TCGCTCATGCTTGCCGAAGTTCAAGGCGCGTGTTCGCTCTTCGTACATGT
ACCACCAGTGTCGGTGTGCCCAATCGATCAACAAGTCCGATTCATCGCTG
CACTGCTTCAGTGCATCGCAACAATGCCCTATGCAACTGCTTAA
back to top

Coding sequence (CDS) from alignment at tig00000110_pilon:108299..109042+

>Ggra11137.t1 ID=Ggra11137.t1|Name=Ggra11137.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=744bp|location=Sequence derived from alignment at tig00000110_pilon:108299..109042+ (Gracilaria gracilis GNS1m male)
ATGGGCACTGTGCCCGACTTCTCAGCAACCCTTTTGGAGCAACCGGCCAT
AACCTCCTCAACCGCCGATGAGGATTCCAAGGTAACCGAGTTTCACCTTA
CAGGCTTCTCTCGCTTCCATAATGTACCGGTAAATCCCACGCAGAGCATA
ATAGAAGCGCTTCCGGCTTATCTCGCCTCACATCCGTTGCAGTCAAGTGT
GATTTTGGCGTCCACAAATGTACTCAAAGTGGCCGCAGAAACGACCAGGG
TTCAGCTAGAGGCATTGTATAAACAGCTCGATAACCCGAGTCATTCCGCC
TTAACATTACGCCGCCGTTCCGATAGACGCGTCGTCTTTATTCACATGGG
TGTCAACATGCGCGCGATGAATTTCGAACTTGAGCATCAAGCCCGCAACG
AAGCGACCTTCTCTTGCCCCGACGAGCTCGGGTGGACACCCATTAAGCGC
CCGATCGACAAGAACAACAGCGACGTACTGTCCGTTCGCAGAACCTCTCT
CTGCCTAGAAAAACTGGCTGAGGAACTCAAACGCCAAAGCTTCAAGGTGC
AACTCTCCACAGACGCAGGGCGTTTCGTTTGCAACTGGGTCTATTACATC
TCGCTCATGCTTGCCGAAGTTCAAGGCGCGTGTTCGCTCTTCGTACATGT
ACCACCAGTGTCGGTGTGCCCAATCGATCAACAAGTCCGATTCATCGCTG
CACTGCTTCAGTGCATCGCAACAATGCCCTATGCAACTGCTTAA
back to top