Ggra11133.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11133.t1
Unique NameGgra11133.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length434
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:97232..98941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog313612.L8106_00300
PFAMsAn_peroxidase,HemolysinCabind
Max annot lvl1117|Cyanobacteria
KEGG koko:K19511
Evalue1.16e-34
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,1G1JS@1117|Cyanobacteria,1H9YK@1150|Oscillatoriales
EC1.11.1.7
DescriptionAnimal haem peroxidase
COG categoryC
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11133Ggra11133Gracilaria gracilis GNS1m malegenetig00000110_pilon 97232..98941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11133.t1Ggra11133.t1Gracilaria gracilis GNS1m malepolypeptidetig00000110_pilon 97232..98941 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11133.t1.start1Ggra11133.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000110_pilon 97232..97234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11133.t1.CDS1Ggra11133.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000110_pilon 97232..97830 +
Ggra11133.t1.CDS2Ggra11133.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000110_pilon 98239..98941 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11133.t1.exon1Ggra11133.t1.exon1Gracilaria gracilis GNS1m maleexontig00000110_pilon 97232..97830 +
Ggra11133.t1.exon2Ggra11133.t1.exon2Gracilaria gracilis GNS1m maleexontig00000110_pilon 98239..98941 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11133.t1.intron1Ggra11133.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000110_pilon 97831..98238 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11133.t1.stop1Ggra11133.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000110_pilon 98939..98941 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11133.t1 ID=Ggra11133.t1|Name=Ggra11133.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=434bp
MNRKVLNPKMKLIVFFVLITTYSNAQPPSGEGADMFSMIPVQPDSITFNA
RRRAVCNPYFRELDGTCTNNYSETRKLWGSTNRPQFSYFKLLTSSTPTGS
KLKSPRAISNILSSQTNETFDERGLNELAIFIGQFLDHTLVSTPTNDGEF
MPIPVPEGDYAGGRVKSLPFKRSVRVKGDQEGSIERPENTLSSAVDLTNV
TAAFRVGHTMVGNRINRRGPGHAFLEPLTLQSSFFRERSFLMGFGVEQFL
RGALVNRAQKVDLLVVDGLRNFLFSDIKGESDNFDLVALNLQRGRDHALP
SYNTIRALFGRSRAVSFEDISKSPGVQSKLRRAYSTPDQVEAWPGLLAED
HLLGSSFGPTLLAVWEREFTRLRNGDRLFFRNKGVFAPSLAQLERVNALM
RGENILRAILIRNSGIVDTEMPIRTFFVNYPDN*
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spliced messenger RNA

>Ggra11133.t1 ID=Ggra11133.t1|Name=Ggra11133.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00000110_pilon:97232..98941+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAGGAAGGTTCTCAACCCGAAAATGAAACTCATAGTTTTCTTTGT
CCTCATCACGACATATTCAAACGCTCAACCACCTTCCGGAGAAGGTGCTG
ATATGTTTTCAATGATCCCTGTTCAGCCGGACAGTATTACCTTCAACGCC
AGGCGTCGCGCGGTATGCAACCCGTATTTTCGAGAGCTGGACGGGACTTG
TACAAACAACTATTCGGAAACAAGAAAGCTGTGGGGGTCCACCAATCGTC
CACAGTTTTCATACTTCAAGTTGCTCACTTCTTCAACCCCCACTGGTTCG
AAACTTAAGTCCCCTCGAGCTATCTCAAATATCTTAAGTTCCCAAACAAA
CGAAACGTTTGATGAGAGAGGTTTGAACGAGCTTGCAATATTTATCGGTC
AATTTCTAGACCACACACTTGTCTCGACGCCAACAAATGATGGGGAGTTC
ATGCCAATCCCAGTTCCAGAAGGAGATTATGCAGGAGGCCGCGTCAAGTC
ATTACCGTTCAAACGATCCGTACGTGTGAAAGGTGATCAAGAAGGTAGCA
TTGAACGCCCGGAGAACACGCTAAGCTCAGCAGTGGATCTTACTAACGTC
ACAGCTGCCTTTCGAGTAGGTCACACAATGGTAGGGAACAGGATTAATCG
AAGAGGCCCGGGGCACGCTTTCCTTGAACCGCTCACGTTACAATCTTCTT
TCTTCCGAGAGAGAAGCTTTCTAATGGGGTTTGGTGTCGAACAATTCCTT
CGCGGTGCGCTAGTAAATCGCGCGCAGAAAGTCGACCTTCTCGTTGTGGA
TGGCTTGCGAAACTTTTTATTCAGCGACATCAAAGGGGAGTCGGACAACT
TCGATCTTGTCGCCCTGAATCTGCAGAGGGGTCGTGATCATGCACTGCCA
TCGTATAATACCATTCGAGCCCTTTTTGGTCGCAGTCGAGCGGTTTCTTT
CGAAGATATCTCGAAAAGCCCAGGTGTTCAGTCAAAGCTGCGGCGAGCCT
ACTCGACCCCTGATCAAGTTGAAGCATGGCCTGGGCTTCTGGCAGAGGAT
CATCTTTTGGGATCATCTTTTGGACCGACTTTGCTGGCAGTCTGGGAGCG
GGAATTCACAAGACTTCGAAATGGTGACCGGCTGTTCTTCAGAAATAAGG
GCGTCTTTGCTCCCTCCTTGGCTCAGCTGGAGCGAGTTAATGCTTTGATG
CGCGGTGAAAACATACTTCGAGCTATTCTGATAAGAAATTCAGGAATAGT
TGACACAGAGATGCCTATAAGAACATTCTTCGTGAACTACCCTGATAATT
GA
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protein sequence of Ggra11133.t1

>Ggra11133.t1 ID=Ggra11133.t1|Name=Ggra11133.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=434bp
MNRKVLNPKMKLIVFFVLITTYSNAQPPSGEGADMFSMIPVQPDSITFNA
RRRAVCNPYFRELDGTCTNNYSETRKLWGSTNRPQFSYFKLLTSSTPTGS
KLKSPRAISNILSSQTNETFDERGLNELAIFIGQFLDHTLVSTPTNDGEF
MPIPVPEGDYAGGRVKSLPFKRSVRVKGDQEGSIERPENTLSSAVDLTNV
TAAFRVGHTMVGNRINRRGPGHAFLEPLTLQSSFFRERSFLMGFGVEQFL
RGALVNRAQKVDLLVVDGLRNFLFSDIKGESDNFDLVALNLQRGRDHALP
SYNTIRALFGRSRAVSFEDISKSPGVQSKLRRAYSTPDQVEAWPGLLAED
HLLGSSFGPTLLAVWEREFTRLRNGDRLFFRNKGVFAPSLAQLERVNALM
RGENILRAILIRNSGIVDTEMPIRTFFVNYPDN*
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mRNA from alignment at tig00000110_pilon:97232..98941+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11133.t1 ID=Ggra11133.t1|Name=Ggra11133.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1710bp|location=Sequence derived from alignment at tig00000110_pilon:97232..98941+ (Gracilaria gracilis GNS1m male)
ATGAACAGGAAGGTTCTCAACCCGAAAATGAAACTCATAGTTTTCTTTGT
CCTCATCACGACATATTCAAACGCTCAACCACCTTCCGGAGAAGGTGCTG
ATATGTTTTCAATGATCCCTGTTCAGCCGGACAGTATTACCTTCAACGCC
AGGCGTCGCGCGGTATGCAACCCGTATTTTCGAGAGCTGGACGGGACTTG
TACAAACAACTATTCGGAAACAAGAAAGCTGTGGGGGTCCACCAATCGTC
CACAGTTTTCATACTTCAAGTTGCTCACTTCTTCAACCCCCACTGGTTCG
AAACTTAAGTCCCCTCGAGCTATCTCAAATATCTTAAGTTCCCAAACAAA
CGAAACGTTTGATGAGAGAGGTTTGAACGAGCTTGCAATATTTATCGGTC
AATTTCTAGACCACACACTTGTCTCGACGCCAACAAATGATGGGGAGTTC
ATGCCAATCCCAGTTCCAGAAGGAGATTATGCAGGAGGCCGCGTCAAGTC
ATTACCGTTCAAACGATCCGTACGTGTGAAAGGTGATCAAGAAGGTAGCA
TTGAACGCCCGGAGAACACGCTAAGCTCAGCAGTGGATCTTACTAACGTG
TACGGTCCAAATCGAAAGAGGGGCAACTTCCTTCGTACCATGCGTGACGG
TTTGATGAAAACTGGTACAGGCAACTTTTTGCCTCCTAATACAGACTTCG
TCAACTCTCCTCCCGACTCGGGAGGGAGatattttcttgctggtgatcat
cgatcaaatgaacaccctgtgttaacttcaattcacacaatatttgtgag
agaacacaactcaatcgcaaaagaactgaaagagaggtttccaagcatga
atgatgagttactgtttcagaatgcgaaaaagatcaatgaggctcagtgg
caaaagattgtatttgaggaaTGGTATCCGTCGGTAACAGGAAGATACAT
GCCAGCGTATCGAGGCTTCAAAAGAGATGCGAATCCAACAGTTAGCGTGA
CGTTTAGCACAGCTGCCTTTCGAGTAGGTCACACAATGGTAGGGAACAGG
ATTAATCGAAGAGGCCCGGGGCACGCTTTCCTTGAACCGCTCACGTTACA
ATCTTCTTTCTTCCGAGAGAGAAGCTTTCTAATGGGGTTTGGTGTCGAAC
AATTCCTTCGCGGTGCGCTAGTAAATCGCGCGCAGAAAGTCGACCTTCTC
GTTGTGGATGGCTTGCGAAACTTTTTATTCAGCGACATCAAAGGGGAGTC
GGACAACTTCGATCTTGTCGCCCTGAATCTGCAGAGGGGTCGTGATCATG
CACTGCCATCGTATAATACCATTCGAGCCCTTTTTGGTCGCAGTCGAGCG
GTTTCTTTCGAAGATATCTCGAAAAGCCCAGGTGTTCAGTCAAAGCTGCG
GCGAGCCTACTCGACCCCTGATCAAGTTGAAGCATGGCCTGGGCTTCTGG
CAGAGGATCATCTTTTGGGATCATCTTTTGGACCGACTTTGCTGGCAGTC
TGGGAGCGGGAATTCACAAGACTTCGAAATGGTGACCGGCTGTTCTTCAG
AAATAAGGGCGTCTTTGCTCCCTCCTTGGCTCAGCTGGAGCGAGTTAATG
CTTTGATGCGCGGTGAAAACATACTTCGAGCTATTCTGATAAGAAATTCA
GGAATAGTTGACACAGAGATGCCTATAAGAACATTCTTCGTGAACTACCC
TGATAATTGA
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Coding sequence (CDS) from alignment at tig00000110_pilon:97232..98941+

>Ggra11133.t1 ID=Ggra11133.t1|Name=Ggra11133.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1302bp|location=Sequence derived from alignment at tig00000110_pilon:97232..98941+ (Gracilaria gracilis GNS1m male)
ATGAACAGGAAGGTTCTCAACCCGAAAATGAAACTCATAGTTTTCTTTGT
CCTCATCACGACATATTCAAACGCTCAACCACCTTCCGGAGAAGGTGCTG
ATATGTTTTCAATGATCCCTGTTCAGCCGGACAGTATTACCTTCAACGCC
AGGCGTCGCGCGGTATGCAACCCGTATTTTCGAGAGCTGGACGGGACTTG
TACAAACAACTATTCGGAAACAAGAAAGCTGTGGGGGTCCACCAATCGTC
CACAGTTTTCATACTTCAAGTTGCTCACTTCTTCAACCCCCACTGGTTCG
AAACTTAAGTCCCCTCGAGCTATCTCAAATATCTTAAGTTCCCAAACAAA
CGAAACGTTTGATGAGAGAGGTTTGAACGAGCTTGCAATATTTATCGGTC
AATTTCTAGACCACACACTTGTCTCGACGCCAACAAATGATGGGGAGTTC
ATGCCAATCCCAGTTCCAGAAGGAGATTATGCAGGAGGCCGCGTCAAGTC
ATTACCGTTCAAACGATCCGTACGTGTGAAAGGTGATCAAGAAGGTAGCA
TTGAACGCCCGGAGAACACGCTAAGCTCAGCAGTGGATCTTACTAACGTC
ACAGCTGCCTTTCGAGTAGGTCACACAATGGTAGGGAACAGGATTAATCG
AAGAGGCCCGGGGCACGCTTTCCTTGAACCGCTCACGTTACAATCTTCTT
TCTTCCGAGAGAGAAGCTTTCTAATGGGGTTTGGTGTCGAACAATTCCTT
CGCGGTGCGCTAGTAAATCGCGCGCAGAAAGTCGACCTTCTCGTTGTGGA
TGGCTTGCGAAACTTTTTATTCAGCGACATCAAAGGGGAGTCGGACAACT
TCGATCTTGTCGCCCTGAATCTGCAGAGGGGTCGTGATCATGCACTGCCA
TCGTATAATACCATTCGAGCCCTTTTTGGTCGCAGTCGAGCGGTTTCTTT
CGAAGATATCTCGAAAAGCCCAGGTGTTCAGTCAAAGCTGCGGCGAGCCT
ACTCGACCCCTGATCAAGTTGAAGCATGGCCTGGGCTTCTGGCAGAGGAT
CATCTTTTGGGATCATCTTTTGGACCGACTTTGCTGGCAGTCTGGGAGCG
GGAATTCACAAGACTTCGAAATGGTGACCGGCTGTTCTTCAGAAATAAGG
GCGTCTTTGCTCCCTCCTTGGCTCAGCTGGAGCGAGTTAATGCTTTGATG
CGCGGTGAAAACATACTTCGAGCTATTCTGATAAGAAATTCAGGAATAGT
TGACACAGAGATGCCTATAAGAACATTCTTCGTGAACTACCCTGATAATT
GA
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