Ggra11131.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11131.t1
Unique NameGgra11131.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:90257..91000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11131Ggra11131Gracilaria gracilis GNS1m malegenetig00000110_pilon 90257..91000 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11131.t1.stop1Ggra11131.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000110_pilon 90257..90259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11131.t1.CDS1Ggra11131.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000110_pilon 90257..91000 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11131.t1.exon1Ggra11131.t1.exon1Gracilaria gracilis GNS1m maleexontig00000110_pilon 90257..91000 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11131.t1.start1Ggra11131.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000110_pilon 90998..91000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11131.t1Ggra11131.t1Gracilaria gracilis GNS1m malepolypeptidetig00000110_pilon 90257..91000 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11131.t1 ID=Ggra11131.t1|Name=Ggra11131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=248bp
MIRFSIIIYAPLVLCLFLTGRSAVGARLKPAPPSTNLISTTPRKRFSSVS
VSASSSPGSVTSDIFYNGTSGSSFNASASASGGQSSFLQASSLASNSGGR
TKIDTESFVSGVGTLTSKARGTVDAPTSYGFSSSASDSECYEPPCYSETL
AFNSSQKPWPFVNSPGSSLGLVGAETGAFRELCMACCRDNNRANKCKCRI
SHQALSNPLKLQKDKFMGYIDGYNGLFLSHCRRAVSEMPFRKQCSCH*
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spliced messenger RNA

>Ggra11131.t1 ID=Ggra11131.t1|Name=Ggra11131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000110_pilon:90257..91000- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGCTTTAGTATAATCATATATGCGCCCCTGGTACTTTGCTTGTT
CCTAACAGGGCGATCAGCGGTCGGCGCACGCCTCAAACCAGCCCCGCCTT
CTACAAACCTGATTTCAACCACCCCCAGGAAAAGGTTTTCTTCGGTGTCC
GTTTCAGCGTCAAGTTCTCCAGGTTCGGTCACCTCCGATATATTCTATAA
CGGCACCTCCGGTTCATCCTTCAACGCTTCCGCTTCCGCCTCAGGCGGAC
AATCGTCGTTTTTACAAGCGTCATCATTGGCATCCAATTCAGGGGGCAGA
ACTAAGATTGACACGGAAAGCTTTGTGTCCGGAGTGGGAACGTTGACATC
AAAGGCCAGAGGAACCGTGGATGCCCCAACTTCATACGGGTTCTCCTCTT
CAGCTTCCGACTCGGAGTGCTATGAACCGCCGTGCTATTCTGAAACTCTT
GCATTTAACAGCTCGCAGAAGCCGTGGCCGTTCGTTAACAGCCCAGGCAG
TAGTCTTGGTTTGGTGGGCGCTGAAACCGGTGCGTTTCGAGAACTGTGTA
TGGCATGTTGCAGAGATAACAATCGAGCAAACAAATGCAAGTGCCGCATA
AGTCACCAAGCGCTTTCTAACCCTTTAAAACTGCAGAAGGACAAGTTTAT
GGGATACATTGATGGGTACAACGGGCTGTTCCTTTCGCACTGCAGACGTG
CAGTGTCTGAAATGCCGTTTAGGAAGCAGTGTTCTTGTCACTGA
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protein sequence of Ggra11131.t1

>Ggra11131.t1 ID=Ggra11131.t1|Name=Ggra11131.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=248bp
MIRFSIIIYAPLVLCLFLTGRSAVGARLKPAPPSTNLISTTPRKRFSSVS
VSASSSPGSVTSDIFYNGTSGSSFNASASASGGQSSFLQASSLASNSGGR
TKIDTESFVSGVGTLTSKARGTVDAPTSYGFSSSASDSECYEPPCYSETL
AFNSSQKPWPFVNSPGSSLGLVGAETGAFRELCMACCRDNNRANKCKCRI
SHQALSNPLKLQKDKFMGYIDGYNGLFLSHCRRAVSEMPFRKQCSCH*
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mRNA from alignment at tig00000110_pilon:90257..91000-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11131.t1 ID=Ggra11131.t1|Name=Ggra11131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000110_pilon:90257..91000- (Gracilaria gracilis GNS1m male)
ATGATTCGCTTTAGTATAATCATATATGCGCCCCTGGTACTTTGCTTGTT
CCTAACAGGGCGATCAGCGGTCGGCGCACGCCTCAAACCAGCCCCGCCTT
CTACAAACCTGATTTCAACCACCCCCAGGAAAAGGTTTTCTTCGGTGTCC
GTTTCAGCGTCAAGTTCTCCAGGTTCGGTCACCTCCGATATATTCTATAA
CGGCACCTCCGGTTCATCCTTCAACGCTTCCGCTTCCGCCTCAGGCGGAC
AATCGTCGTTTTTACAAGCGTCATCATTGGCATCCAATTCAGGGGGCAGA
ACTAAGATTGACACGGAAAGCTTTGTGTCCGGAGTGGGAACGTTGACATC
AAAGGCCAGAGGAACCGTGGATGCCCCAACTTCATACGGGTTCTCCTCTT
CAGCTTCCGACTCGGAGTGCTATGAACCGCCGTGCTATTCTGAAACTCTT
GCATTTAACAGCTCGCAGAAGCCGTGGCCGTTCGTTAACAGCCCAGGCAG
TAGTCTTGGTTTGGTGGGCGCTGAAACCGGTGCGTTTCGAGAACTGTGTA
TGGCATGTTGCAGAGATAACAATCGAGCAAACAAATGCAAGTGCCGCATA
AGTCACCAAGCGCTTTCTAACCCTTTAAAACTGCAGAAGGACAAGTTTAT
GGGATACATTGATGGGTACAACGGGCTGTTCCTTTCGCACTGCAGACGTG
CAGTGTCTGAAATGCCGTTTAGGAAGCAGTGTTCTTGTCACTGA
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Coding sequence (CDS) from alignment at tig00000110_pilon:90257..91000-

>Ggra11131.t1 ID=Ggra11131.t1|Name=Ggra11131.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=744bp|location=Sequence derived from alignment at tig00000110_pilon:90257..91000- (Gracilaria gracilis GNS1m male)
ATGATTCGCTTTAGTATAATCATATATGCGCCCCTGGTACTTTGCTTGTT
CCTAACAGGGCGATCAGCGGTCGGCGCACGCCTCAAACCAGCCCCGCCTT
CTACAAACCTGATTTCAACCACCCCCAGGAAAAGGTTTTCTTCGGTGTCC
GTTTCAGCGTCAAGTTCTCCAGGTTCGGTCACCTCCGATATATTCTATAA
CGGCACCTCCGGTTCATCCTTCAACGCTTCCGCTTCCGCCTCAGGCGGAC
AATCGTCGTTTTTACAAGCGTCATCATTGGCATCCAATTCAGGGGGCAGA
ACTAAGATTGACACGGAAAGCTTTGTGTCCGGAGTGGGAACGTTGACATC
AAAGGCCAGAGGAACCGTGGATGCCCCAACTTCATACGGGTTCTCCTCTT
CAGCTTCCGACTCGGAGTGCTATGAACCGCCGTGCTATTCTGAAACTCTT
GCATTTAACAGCTCGCAGAAGCCGTGGCCGTTCGTTAACAGCCCAGGCAG
TAGTCTTGGTTTGGTGGGCGCTGAAACCGGTGCGTTTCGAGAACTGTGTA
TGGCATGTTGCAGAGATAACAATCGAGCAAACAAATGCAAGTGCCGCATA
AGTCACCAAGCGCTTTCTAACCCTTTAAAACTGCAGAAGGACAAGTTTAT
GGGATACATTGATGGGTACAACGGGCTGTTCCTTTCGCACTGCAGACGTG
CAGTGTCTGAAATGCCGTTTAGGAAGCAGTGTTCTTGTCACTGA
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