Ggra11129.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11129.t1
Unique NameGgra11129.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:82811..85319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI42042
PFAMsEFG_C,EFG_II,EFG_IV,GTP_EFTU,GTP_EFTU_D2
Max annot lvl4776|Peronosporales
Evalue6.53e-25
EggNOG OGsCOG4108@1|root,KOG0464@2759|Eukaryota,3Q9E4@4776|Peronosporales
DescriptionElongation factor G, domain IV
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11129Ggra11129Gracilaria gracilis GNS1m malegenetig00000110_pilon 82811..85319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11129.t1Ggra11129.t1Gracilaria gracilis GNS1m malepolypeptidetig00000110_pilon 82811..85319 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11129.t1.stop1Ggra11129.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000110_pilon 82811..82813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11129.t1.CDS1Ggra11129.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000110_pilon 82811..82820 -
Ggra11129.t1.CDS2Ggra11129.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000110_pilon 82897..82926 -
Ggra11129.t1.CDS3Ggra11129.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000110_pilon 83753..84265 -
Ggra11129.t1.CDS4Ggra11129.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000110_pilon 84322..84725 -
Ggra11129.t1.CDS5Ggra11129.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000110_pilon 85113..85319 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11129.t1.exon1Ggra11129.t1.exon1Gracilaria gracilis GNS1m maleexontig00000110_pilon 82811..82820 -
Ggra11129.t1.exon2Ggra11129.t1.exon2Gracilaria gracilis GNS1m maleexontig00000110_pilon 82897..82926 -
Ggra11129.t1.exon3Ggra11129.t1.exon3Gracilaria gracilis GNS1m maleexontig00000110_pilon 83753..84265 -
Ggra11129.t1.exon4Ggra11129.t1.exon4Gracilaria gracilis GNS1m maleexontig00000110_pilon 84322..84725 -
Ggra11129.t1.exon5Ggra11129.t1.exon5Gracilaria gracilis GNS1m maleexontig00000110_pilon 85113..85319 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11129.t1.intron1Ggra11129.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000110_pilon 82821..82896 -
Ggra11129.t1.intron2Ggra11129.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000110_pilon 82927..83752 -
Ggra11129.t1.intron3Ggra11129.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000110_pilon 84266..84321 -
Ggra11129.t1.intron4Ggra11129.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000110_pilon 84726..85112 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11129.t1.start1Ggra11129.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000110_pilon 85317..85319 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11129.t1 ID=Ggra11129.t1|Name=Ggra11129.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=388bp
MPPSSAVQYALVLESRKYTKANERSPRFRVKSKSSTSKVRCESSASHKAG
RSNLALWAIYAPEEHSTANFLLGAVTLKTRLAFTNICDKDETVSYGRLYK
IRRYGTRIGAIAVGYAEGMRAQKDHCVVIRGKKVPVVGRICADFSMVDLS
AVPEAEAGDSVLILGKDEHTGCEMSWDEAAEAAGSPPHQMMARGMLRLRR
RFVSNTLVRVQHATKDPAHLARTACLAAVIPIASDSERRTYCFASTRAHM
LPMAPALRALLRRTYRIACPPHALHRHLSRFVHNAPDNSPTSPSLSRVFG
IIAHINSGKTTTSEAMLYHAGALRRMGNVDAGDTSMDYLPQERQRGITIS
AASTCLPWRQHRFFIVDSPGHLDFTASTLGIYLQRLD*
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spliced messenger RNA

>Ggra11129.t1 ID=Ggra11129.t1|Name=Ggra11129.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000110_pilon:82811..85319- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCTAGCTCCGCTGTTCAATACGCGTTGGTTCTAGAGTCACGCAA
GTACACAAAAGCGAATGAACGATCCCCGCGATTTCGCGTGAAGAGCAAAT
CGTCCACGTCGAAAGTGCGATGTGAAAGCTCAGCCTCGCACAAAGCTGGA
CGAAGCAACCTTGCATTATGGGCGATATACGCACCGGAGGAACATTCCAC
CGCGAACTTTCTTCTGGGAGCGGTAACTCTTAAGACGCGTCTTGCATTCA
CCAACATCTGCGACAAGGACGAAACCGTGAGCTACGGGCGGCTGTACAAG
ATTCGAAGATATGGGACGCGCATCGGGGCAATAGCAGTGGGGTATGCGGA
AGGAATGCGCGCACAGAAAGATCACTGCGTGGTGATCCGCGGGAAGAAGG
TGCCGGTTGTTGGGCGCATCTGCGCCGACTTTAGCATGGTGGATTTGAGC
GCGGTGCCTGAAGCGGAAGCAGGCGATTCGGTGCTGATTCTCGGAAAGGA
CGAGCACACGGGCTGCGAGATGAGCTGGGATGAAGCTGCTGAAGCGGCGG
GCTCACCGCCGCATCAAATGATGGCGCGAGGGATGCTCCGCCTGCGAAGG
CGCTTCGTTTCGAACACCCTCGTACGTGTCCAGCACGCCACGAAGGATCC
TGCACACCTCGCTCGAACAGCATGCCTGGCCGCCGTGATCCCCATCGCTT
CAGATTCTGAACGCAGAACGTATTGCTTCGCCTCTACACGCGCTCACATG
CTGCCAATGGCACCTGCCCTCCGAGCGCTGCTCCGCCGCACCTACCGCAT
CGCCTGTCCTCCTCATGCTCTTCACCGCCATCTCTCACGCTTCGTGCACA
ATGCGCCGGACAACTCGCCCACATCGCCTTCGCTCTCCCGTGTGTTTGGC
ATCATTGCCCACATAAACTCAGGAAAGACAACCACGTCTGAAGCCATGCT
CTACCACGCCGGCGCCCTTCGTCGCATGGGTAACGTCGATGCCGGTGACA
CCAGTATGGATTATCTGCCACAAGAAAGACAGCGTGGCATAACCATCTCC
GCCGCTTCAACCTGTCTTCCGTGGCGACAGCATCGCTTCTTCATCGTTGA
TTCGCCGGGACATCTTGACTTTACAGCGTCAACACTGGGGATATATTTGC
AGCGACTGGATTGA
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protein sequence of Ggra11129.t1

>Ggra11129.t1 ID=Ggra11129.t1|Name=Ggra11129.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=388bp
MPPSSAVQYALVLESRKYTKANERSPRFRVKSKSSTSKVRCESSASHKAG
RSNLALWAIYAPEEHSTANFLLGAVTLKTRLAFTNICDKDETVSYGRLYK
IRRYGTRIGAIAVGYAEGMRAQKDHCVVIRGKKVPVVGRICADFSMVDLS
AVPEAEAGDSVLILGKDEHTGCEMSWDEAAEAAGSPPHQMMARGMLRLRR
RFVSNTLVRVQHATKDPAHLARTACLAAVIPIASDSERRTYCFASTRAHM
LPMAPALRALLRRTYRIACPPHALHRHLSRFVHNAPDNSPTSPSLSRVFG
IIAHINSGKTTTSEAMLYHAGALRRMGNVDAGDTSMDYLPQERQRGITIS
AASTCLPWRQHRFFIVDSPGHLDFTASTLGIYLQRLD*
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mRNA from alignment at tig00000110_pilon:82811..85319-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11129.t1 ID=Ggra11129.t1|Name=Ggra11129.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2509bp|location=Sequence derived from alignment at tig00000110_pilon:82811..85319- (Gracilaria gracilis GNS1m male)
ATGCCGCCTAGCTCCGCTGTTCAATACGCGTTGGTTCTAGAGTCACGCAA
GTACACAAAAGCGAATGAACGATCCCCGCGATTTCGCGTGAAGAGCAAAT
CGTCCACGTCGAAAGTGCGATGTGAAAGCTCAGCCTCGCACAAAGCTGGA
CGAAGCAACCTTGCATTATGGGCGATATACGCACCGGAGGAACATTCCAC
CGCGAACGTAAACCGCAACAAGAGAGCATCTCTTGCCCATCTCTTCATCT
CCTGATTACCCACTTCGGTAGGGGACGTCGGATGTGCTTCAAGAGACTTT
CCGAGGACTGCCGTCAGTTGTTGCGTGGGAAGCAAACAACATGAACGTGC
TTCGGGGTTTCATTTACAATACAGATATGGCATGGCTTTCTTCTCATCTA
TAAAACCATCTGATCATCATCTGCTTTCTTTTCCTCTCTCTCAGTTTACT
CTCTCATCGATTTCTTGTACGGGTACTTCTTGGACTGACTGTTACACGCC
AGCATTTCTTCTTCTTCGACAACTAAGGTAGAATTTCCTCACAAAATGAC
ATCTCAGCCGCAAACACATCTACCATTCTCGTCGAGAATCGCAGTTTCTT
CTGGGAGCGGTAACTCTTAAGACGCGTCTTGCATTCACCAACATCTGCGA
CAAGGACGAAACCGTGAGCTACGGGCGGCTGTACAAGATTCGAAGATATG
GGACGCGCATCGGGGCAATAGCAGTGGGGTATGCGGAAGGAATGCGCGCA
CAGAAAGATCACTGCGTGGTGATCCGCGGGAAGAAGGTGCCGGTTGTTGG
GCGCATCTGCGCCGACTTTAGCATGGTGGATTTGAGCGCGGTGCCTGAAG
CGGAAGCAGGCGATTCGGTGCTGATTCTCGGAAAGGACGAGCACACGGGC
TGCGAGATGAGCTGGGATGAAGCTGCTGAAGCGGCGGGCTCACCGCCGCA
TCAAATGATGGCGCGAGGGATGCTCCGCCTGCGAAGGCGCTTCGTTTCGT
GCTCGACCCCACGTGCTCGACCTGCCAATGACATTCTGTAAATATATCTG
TAAGGAACACCCTCGTACGTGTCCAGCACGCCACGAAGGATCCTGCACAC
CTCGCTCGAACAGCATGCCTGGCCGCCGTGATCCCCATCGCTTCAGATTC
TGAACGCAGAACGTATTGCTTCGCCTCTACACGCGCTCACATGCTGCCAA
TGGCACCTGCCCTCCGAGCGCTGCTCCGCCGCACCTACCGCATCGCCTGT
CCTCCTCATGCTCTTCACCGCCATCTCTCACGCTTCGTGCACAATGCGCC
GGACAACTCGCCCACATCGCCTTCGCTCTCCCGTGTGTTTGGCATCATTG
CCCACATAAACTCAGGAAAGACAACCACGTCTGAAGCCATGCTCTACCAC
GCCGGCGCCCTTCGTCGCATGGGTAACGTCGATGCCGGTGACACCAGTAT
GGATTATCTGCCACAAGAAAGACAGCGTGGCATAACCATCTCCGCCGCTT
CAACCTGTCTTCCGTGGCGACAGCATCGCTTCTTCATCGTTGATTCGCCG
GGACATCTTGACTTTACGTACGAGGTTGAAACTTGTCTCAGAGCCATTGA
TTCCGTTCTTGTCTTGCTTGATGCTGTGGCTGCTGTGCAGCCGCAAACGG
AGACTGTGTGGCGACAAGCAGATGCCAATCATCTACCGCGCGTCGTGTTT
GTCAACAAGATGGATCGTGATGCCGCAGATCTTCATCGCGTCGTTCGCAA
CTTGCAGCAGTCTTTCCACACATCCCCAGCCGTCTTACATCAGCCGATTT
TCACCAATGGCGTTTTCACTGGTAGTTACGATCTCCTACAGACTTTTCCG
ACTCCACAAACTGATGAAATGCAGCCCATCTCCACTGTTCCCGACGAATA
TCAAGCGCAAATCCGTAGAGCTGCTGATACGCTGCTTGAAACCGTTGCCG
ATGCTGACGACGAAATCATGAGCCTCTACCTCGATGGTCAACCCATTACG
CGACAACAGATGCAGTCCGCTCTTCGAAGCGCCTGTATATCCAACAAGAT
AGTTCCTATTCTCTGCGGGTCTTCTCTGAATCGCGTCGGTGTGGAACAGC
TTATGGACGCTGTTGTTGACTACTTACCAGCTCCAACCGAAAGAAAGTCT
GTTAAGGCACGTTCTATCGAGAACTACCATACAGTGAGTGTACCCATATC
TAGCGAGGCTCCATTCGTCGCATACGCGTTCAAGGTCACATATGACCGAC
ATCGTGGACGACTTGTTCACCTGCGTGTCTTCACTGGCTCGCTCCCGGAT
GGCAAGAAGCCCTTACTCAATACGACTCAAGAACAGGCAGAAAAGCCAAC
CAAATTGCTTCGGGTTATCGCTGACAAATTCGTTGAGATCCAGAGCGTCA
ACACTGGGGATATATTTGCAGCGGTAAGTTCCTTTCCAATCTTTTTGGCT
ATATGACATGCTGAATACTAATTACGAACACTCTGACTATGTACTTCAGA
CTGGATTGA
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Coding sequence (CDS) from alignment at tig00000110_pilon:82811..85319-

>Ggra11129.t1 ID=Ggra11129.t1|Name=Ggra11129.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1164bp|location=Sequence derived from alignment at tig00000110_pilon:82811..85319- (Gracilaria gracilis GNS1m male)
ATGCCGCCTAGCTCCGCTGTTCAATACGCGTTGGTTCTAGAGTCACGCAA
GTACACAAAAGCGAATGAACGATCCCCGCGATTTCGCGTGAAGAGCAAAT
CGTCCACGTCGAAAGTGCGATGTGAAAGCTCAGCCTCGCACAAAGCTGGA
CGAAGCAACCTTGCATTATGGGCGATATACGCACCGGAGGAACATTCCAC
CGCGAACTTTCTTCTGGGAGCGGTAACTCTTAAGACGCGTCTTGCATTCA
CCAACATCTGCGACAAGGACGAAACCGTGAGCTACGGGCGGCTGTACAAG
ATTCGAAGATATGGGACGCGCATCGGGGCAATAGCAGTGGGGTATGCGGA
AGGAATGCGCGCACAGAAAGATCACTGCGTGGTGATCCGCGGGAAGAAGG
TGCCGGTTGTTGGGCGCATCTGCGCCGACTTTAGCATGGTGGATTTGAGC
GCGGTGCCTGAAGCGGAAGCAGGCGATTCGGTGCTGATTCTCGGAAAGGA
CGAGCACACGGGCTGCGAGATGAGCTGGGATGAAGCTGCTGAAGCGGCGG
GCTCACCGCCGCATCAAATGATGGCGCGAGGGATGCTCCGCCTGCGAAGG
CGCTTCGTTTCGAACACCCTCGTACGTGTCCAGCACGCCACGAAGGATCC
TGCACACCTCGCTCGAACAGCATGCCTGGCCGCCGTGATCCCCATCGCTT
CAGATTCTGAACGCAGAACGTATTGCTTCGCCTCTACACGCGCTCACATG
CTGCCAATGGCACCTGCCCTCCGAGCGCTGCTCCGCCGCACCTACCGCAT
CGCCTGTCCTCCTCATGCTCTTCACCGCCATCTCTCACGCTTCGTGCACA
ATGCGCCGGACAACTCGCCCACATCGCCTTCGCTCTCCCGTGTGTTTGGC
ATCATTGCCCACATAAACTCAGGAAAGACAACCACGTCTGAAGCCATGCT
CTACCACGCCGGCGCCCTTCGTCGCATGGGTAACGTCGATGCCGGTGACA
CCAGTATGGATTATCTGCCACAAGAAAGACAGCGTGGCATAACCATCTCC
GCCGCTTCAACCTGTCTTCCGTGGCGACAGCATCGCTTCTTCATCGTTGA
TTCGCCGGGACATCTTGACTTTACAGCGTCAACACTGGGGATATATTTGC
AGCGACTGGATTGA
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