Ggra11127.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11127.t1
Unique NameGgra11127.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:77505..79246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog135651.CBN06927
Preferred namernh-1.3
PFAMsRNase_H
Max annot lvl33208|Metazoa
KEGG koko:K03469
KEGG Pathwayko03030,map03030
Evalue1.28e-06
EggNOG OGsCOG0328@1|root,KOG3752@2759|Eukaryota,39U14@33154|Opisthokonta,3CIHD@33208|Metazoa,3E01G@33213|Bilateria,40MHS@6231|Nematoda,1M4YW@119089|Chromadorea,4133S@6236|Rhabditida
EC3.1.26.4
DescriptionRNase H
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11127Ggra11127Gracilaria gracilis GNS1m malegenetig00000110_pilon 77505..79246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11127.t1Ggra11127.t1Gracilaria gracilis GNS1m malepolypeptidetig00000110_pilon 77505..79246 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11127.t1.start1Ggra11127.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000110_pilon 77505..77507 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11127.t1.CDS1Ggra11127.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000110_pilon 77505..78222 +
Ggra11127.t1.CDS2Ggra11127.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000110_pilon 78927..79246 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11127.t1.exon1Ggra11127.t1.exon1Gracilaria gracilis GNS1m maleexontig00000110_pilon 77505..78222 +
Ggra11127.t1.exon2Ggra11127.t1.exon2Gracilaria gracilis GNS1m maleexontig00000110_pilon 78927..79246 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11127.t1.intron1Ggra11127.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000110_pilon 78223..78926 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11127.t1.stop1Ggra11127.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000110_pilon 79244..79246 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11127.t1 ID=Ggra11127.t1|Name=Ggra11127.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=346bp
MRDIVVTVDGSCLHNGRPYAVGGWGAVISLPGGVRAEACRQLCGYCNPTQ
SNSRAEIRAVQFAQNLLSEVAKMGHPTHLNPDGSRCRMTAPHRHDSLDDG
RPDINRRFNFLVRSDSEYVVKGIYGEINVMAHSDLWDQVFENHQCIAQNG
STIEYHHVYGHRGDKLNERADTLARHAAPLVGYSMYRCCSCEAYFPDSDG
LACHLKEIHMNRDLSHEMEALYDFYEQDGYYYCTLCHRVYLQSAVGAGNE
EEVGEYGIVGSQPSQATQNPSIVTGPGSQPFLPTIAPTAKLMKKVSNVRF
ASAEKLLEEFRSVRPLLRELVTEDDFDDLFSPRNEAERRARKAAL*
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spliced messenger RNA

>Ggra11127.t1 ID=Ggra11127.t1|Name=Ggra11127.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1038bp|location=Sequence derived from alignment at tig00000110_pilon:77505..79246+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGACATTGTAGTGACCGTGGACGGTTCCTGTCTCCACAACGGGCG
GCCATACGCCGTTGGAGGATGGGGCGCCGTCATCTCTCTACCAGGCGGCG
TGCGGGCGGAAGCTTGTCGTCAACTGTGTGGCTATTGTAACCCCACGCAG
AGTAACAGTCGCGCTGAAATTCGGGCTGTGCAGTTTGCGCAGAACCTCTT
GTCCGAAGTGGCCAAGATGGGACACCCGACGCATCTTAACCCCGATGGGA
GTAGATGTCGTATGACTGCGCCTCATAGGCATGATTCACTGGATGATGGA
CGTCCGGACATTAATAGACGGTTTAACTTTCTCGTTCGTTCTGATAGTGA
GTATGTTGTGAAGGGCATATACGGTGAAATCAACGTGATGGCTCATTCAG
ATCTTTGGGATCAAGTGTTTGAGAATCACCAATGCATTGCACAGAATGGG
AGCACGATTGAATACCACCATGTGTACGGCCACAGAGGAGACAAACTTAA
CGAAAGGGCTGACACTCTGGCTCGTCATGCTGCACCCCTTGTAGGTTACA
GCATGTATAGATGCTGTAGCTGTGAGGCATACTTCCCAGACAGCGATGGA
TTGGCTTGTCATCTAAAGGAAATCCACATGAACCGCGATCTCAGCCACGA
AATGGAAGCCTTGTACGACTTTTACGAACAGGATGGATACTACTACTGCA
CTCTTTGTCATAGAGTGTATTTACAAAGCGCTGTTGGCGCGGGCAATGAG
GAGGAAGTCGGGGAGTACGGAATTGTTGGTTCGCAACCCAGTCAAGCTAC
ACAGAATCCTTCTATTGTAACTGGTCCTGGAAGTCAACCATTCCTTCCCA
CCATTGCCCCTACCGCCAAGCTAATGAAGAAGGTTTCAAATGTGCGGTTT
GCTTCCGCCGAGAAGCTGCTGGAAGAATTTAGAAGTGTTCGCCCTCTACT
GCGCGAGCTCGTCACTGAAGATGACTTCGATGACCTTTTCTCACCGCGAA
ATGAGGCCGAGAGAAGAGCTCGCAAAGCAGCTTTGTAG
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protein sequence of Ggra11127.t1

>Ggra11127.t1 ID=Ggra11127.t1|Name=Ggra11127.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=346bp
MRDIVVTVDGSCLHNGRPYAVGGWGAVISLPGGVRAEACRQLCGYCNPTQ
SNSRAEIRAVQFAQNLLSEVAKMGHPTHLNPDGSRCRMTAPHRHDSLDDG
RPDINRRFNFLVRSDSEYVVKGIYGEINVMAHSDLWDQVFENHQCIAQNG
STIEYHHVYGHRGDKLNERADTLARHAAPLVGYSMYRCCSCEAYFPDSDG
LACHLKEIHMNRDLSHEMEALYDFYEQDGYYYCTLCHRVYLQSAVGAGNE
EEVGEYGIVGSQPSQATQNPSIVTGPGSQPFLPTIAPTAKLMKKVSNVRF
ASAEKLLEEFRSVRPLLRELVTEDDFDDLFSPRNEAERRARKAAL*
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mRNA from alignment at tig00000110_pilon:77505..79246+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11127.t1 ID=Ggra11127.t1|Name=Ggra11127.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1742bp|location=Sequence derived from alignment at tig00000110_pilon:77505..79246+ (Gracilaria gracilis GNS1m male)
ATGAGAGACATTGTAGTGACCGTGGACGGTTCCTGTCTCCACAACGGGCG
GCCATACGCCGTTGGAGGATGGGGCGCCGTCATCTCTCTACCAGGCGGCG
TGCGGGCGGAAGCTTGTCGTCAACTGTGTGGCTATTGTAACCCCACGCAG
AGTAACAGTCGCGCTGAAATTCGGGCTGTGCAGTTTGCGCAGAACCTCTT
GTCCGAAGTGGCCAAGATGGGACACCCGACGCATCTTAACCCCGATGGGA
GTAGATGTCGTATGACTGCGCCTCATAGGCATGATTCACTGGATGATGGA
CGTCCGGACATTAATAGACGGTTTAACTTTCTCGTTCGTTCTGATAGTGA
GTATGTTGTGAAGGGCATATACGGTGAAATCAACGTGATGGCTCATTCAG
ATCTTTGGGATCAAGTGTTTGAGAATCACCAATGCATTGCACAGAATGGG
AGCACGATTGAATACCACCATGTGTACGGCCACAGAGGAGACAAACTTAA
CGAAAGGGCTGACACTCTGGCTCGTCATGCTGCACCCCTTGTAGGTTACA
GCATGTATAGATGCTGTAGCTGTGAGGCATACTTCCCAGACAGCGATGGA
TTGGCTTGTCATCTAAAGGAAATCCACATGAACCGCGATCTCAGCCACGA
AATGGAAGCCTTGTACGACTTTTACGAACAGGATGGATACTACTACTGCA
CTCTTTGTCATAGAGTGTGTAATCAGTTGCACTCTATCTGGCAGCACAAC
CTCGCCAAACACTGTAGTCATTACTAGAGAGATGGTCGAAGGAGAACCTG
CGGAACGAAACAAGTTTGTATTGTGGAAGCGTATCCATGTTATCTGAAGT
TGTACAGCAGCGCTGGCACGTGGCGAAACCGCACCTTCTGTATTGCACCT
TGAGAGTACATCCGTCACCTTGCAGGCGTAGCGTTGGTAGATATCTATAC
CGAAGTTAACGTTACATCTGAGTCTCGCGACAACGTGCTCGTTGCCAGAA
TTGGTAATGCAACCACCAACAAATGTGAAACTTGTTCTGGAAGGACTTCA
GAGTCTTGATTTTGTACACAAGAAGGGCTCTGGAACCCGAAGTCTGGGCT
TAAACAGTCGCTGACTTAACTGGTCCAATGGGTCCCCTATTGGGACCCAT
TGGACTCGTAAAGGACCGGATTGAAACCACCGCTGTTTTATACGGCAACA
TCTTTCCAAGTTGGTACCAACAGTACCAAGAgaaaagtgagcacaataaa
ttgtggcttgtcccttgtgacaagctgaccccccgctacCAAGTTGGTAC
CGTTGGTGATGGAGGACGGTTGGGTTGTTCTGGTAACCAAGGAGAGATAC
ACGGCTCCCCTGCCCCAGAAACTACCGAACAAGAGTTGGTGCTTGTGTCA
CTCTCCTGTCAAGGATATGCAGATTTACAAAGCGCTGTTGGCGCGGGCAA
TGAGGAGGAAGTCGGGGAGTACGGAATTGTTGGTTCGCAACCCAGTCAAG
CTACACAGAATCCTTCTATTGTAACTGGTCCTGGAAGTCAACCATTCCTT
CCCACCATTGCCCCTACCGCCAAGCTAATGAAGAAGGTTTCAAATGTGCG
GTTTGCTTCCGCCGAGAAGCTGCTGGAAGAATTTAGAAGTGTTCGCCCTC
TACTGCGCGAGCTCGTCACTGAAGATGACTTCGATGACCTTTTCTCACCG
CGAAATGAGGCCGAGAGAAGAGCTCGCAAAGCAGCTTTGTAG
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Coding sequence (CDS) from alignment at tig00000110_pilon:77505..79246+

>Ggra11127.t1 ID=Ggra11127.t1|Name=Ggra11127.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1038bp|location=Sequence derived from alignment at tig00000110_pilon:77505..79246+ (Gracilaria gracilis GNS1m male)
ATGAGAGACATTGTAGTGACCGTGGACGGTTCCTGTCTCCACAACGGGCG
GCCATACGCCGTTGGAGGATGGGGCGCCGTCATCTCTCTACCAGGCGGCG
TGCGGGCGGAAGCTTGTCGTCAACTGTGTGGCTATTGTAACCCCACGCAG
AGTAACAGTCGCGCTGAAATTCGGGCTGTGCAGTTTGCGCAGAACCTCTT
GTCCGAAGTGGCCAAGATGGGACACCCGACGCATCTTAACCCCGATGGGA
GTAGATGTCGTATGACTGCGCCTCATAGGCATGATTCACTGGATGATGGA
CGTCCGGACATTAATAGACGGTTTAACTTTCTCGTTCGTTCTGATAGTGA
GTATGTTGTGAAGGGCATATACGGTGAAATCAACGTGATGGCTCATTCAG
ATCTTTGGGATCAAGTGTTTGAGAATCACCAATGCATTGCACAGAATGGG
AGCACGATTGAATACCACCATGTGTACGGCCACAGAGGAGACAAACTTAA
CGAAAGGGCTGACACTCTGGCTCGTCATGCTGCACCCCTTGTAGGTTACA
GCATGTATAGATGCTGTAGCTGTGAGGCATACTTCCCAGACAGCGATGGA
TTGGCTTGTCATCTAAAGGAAATCCACATGAACCGCGATCTCAGCCACGA
AATGGAAGCCTTGTACGACTTTTACGAACAGGATGGATACTACTACTGCA
CTCTTTGTCATAGAGTGTATTTACAAAGCGCTGTTGGCGCGGGCAATGAG
GAGGAAGTCGGGGAGTACGGAATTGTTGGTTCGCAACCCAGTCAAGCTAC
ACAGAATCCTTCTATTGTAACTGGTCCTGGAAGTCAACCATTCCTTCCCA
CCATTGCCCCTACCGCCAAGCTAATGAAGAAGGTTTCAAATGTGCGGTTT
GCTTCCGCCGAGAAGCTGCTGGAAGAATTTAGAAGTGTTCGCCCTCTACT
GCGCGAGCTCGTCACTGAAGATGACTTCGATGACCTTTTCTCACCGCGAA
ATGAGGCCGAGAGAAGAGCTCGCAAAGCAGCTTTGTAG
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