Ggra11126.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11126.t1
Unique NameGgra11126.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length391
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:74009..75181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_02508T0
Max annot lvl2759|Eukaryota
Evalue1.34e-12
EggNOG OGs2D01C@1|root,2SCE4@2759|Eukaryota
DescriptionEF-hand domain pair
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11126Ggra11126Gracilaria gracilis GNS1m malegenetig00000110_pilon 74009..75181 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11126.t1.stop1Ggra11126.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000110_pilon 74009..74011 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11126.t1.CDS1Ggra11126.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000110_pilon 74009..75181 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11126.t1.exon1Ggra11126.t1.exon1Gracilaria gracilis GNS1m maleexontig00000110_pilon 74009..75181 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11126.t1.start1Ggra11126.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000110_pilon 75179..75181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11126.t1Ggra11126.t1Gracilaria gracilis GNS1m malepolypeptidetig00000110_pilon 74009..75181 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11126.t1 ID=Ggra11126.t1|Name=Ggra11126.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=391bp
MSDGSPFGKRKSCRGHDARKALILRKSFEVYDRDKSGAIDCEELRSLLRD
LGWPSDDAFVQRAVNVLDTDNSGEIGFSEFLQWTEFAYTARILYRDEMCS
SPVGAARPKVDACEVRGAQSSPWMCRVLQENNQQMQKVHSGAGNTPLSTV
FEESEREPEKLLCGSNENGVIGTSTGVSPCRNGFSSPWHVNEHEDENRFV
QSRFSSRETGGEDEVEFSAPITKMATMTLGRSRNINTWTTSRIRSKSVDN
YRCFGYNATLGTPRGRERYRGEGKTCGPRVRSKATARVLWACEQLRTKSI
TGDSEDDEDESSDDDRNASPIVNMEGTRINPETEQKKTEELRSKSRNCRS
RSRRVSCVGEFPNRVEEVPNSRTGESEEDKDQHMRKASSI*
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spliced messenger RNA

>Ggra11126.t1 ID=Ggra11126.t1|Name=Ggra11126.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000110_pilon:74009..75181- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGACGGGTCACCATTCGGAAAACGAAAGAGTTGTCGTGGTCATGA
CGCTCGCAAAGCTCTTATTCTCCGGAAGTCGTTCGAGGTGTATGATAGGG
ATAAGTCTGGTGCCATCGATTGTGAGGAGCTTCGAAGCCTTCTACGGGAT
TTGGGTTGGCCGTCTGACGATGCGTTTGTGCAACGTGCAGTTAATGTTTT
GGACACAGATAACTCAGGAGAAATCGGGTTCTCCGAGTTTCTCCAGTGGA
CAGAATTTGCATACACTGCCAGAATTTTGTACAGAGACGAGATGTGTTCT
TCTCCAGTAGGAGCAGCCAGGCCCAAAGTTGATGCCTGCGAAGTTCGGGG
CGCACAATCGTCTCCTTGGATGTGCCGGGTACTGCAGGAGAACAATCAAC
AGATGCAGAAGGTACATTCCGGTGCTGGCAATACGCCGCTTTCAACGGTC
TTTGAAGAATCAGAACGTGAACCTGAAAAACTCCTCTGTGGTTCAAACGA
AAACGGTGTTATTGGCACAAGCACCGGAGTGTCGCCATGTAGAAACGGCT
TTTCTTCTCCCTGGCATGTAAATGAACATGAAGATGAGAATCGCTTTGTG
CAGAGCAGATTCTCGAGTCGCGAAACGGGAGGGGAAGATGAAGTCGAATT
CAGCGCACCCATCACGAAAATGGCCACAATGACTTTAGGACGGAGTCGAA
ACATCAACACCTGGACCACGTCTCGAATCAGGTCAAAATCAGTTGACAAC
TATCGATGCTTTGGGTATAATGCTACCCTTGGTACACCACGAGGACGAGA
GCGATATCGCGGGGAGGGAAAGACATGCGGACCTCGGGTGCGCTCAAAAG
CTACGGCACGAGTACTTTGGGCGTGCGAACAACTACGGACAAAATCCATA
ACAGGTGATTCTGAGGATGACGAAGATGAATCTTCTGACGACGATAGGAA
TGCATCACCGATCGTGAACATGGAAGGGACAAGGATAAACCCGGAAACCG
AGCAGAAAAAGACAGAAGAATTGAGGTCAAAGTCGCGGAACTGCAGATCG
CGCAGTCGGAGGGTTTCTTGCGTTGGAGAGTTTCCAAACAGGGTTGAAGA
AGTCCCAAATTCAAGAACTGGGGAATCGGAAGAAGATAAAGATCAGCATA
TGCGAAAGGCAAGTTCGATATGA
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protein sequence of Ggra11126.t1

>Ggra11126.t1 ID=Ggra11126.t1|Name=Ggra11126.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=391bp
MSDGSPFGKRKSCRGHDARKALILRKSFEVYDRDKSGAIDCEELRSLLRD
LGWPSDDAFVQRAVNVLDTDNSGEIGFSEFLQWTEFAYTARILYRDEMCS
SPVGAARPKVDACEVRGAQSSPWMCRVLQENNQQMQKVHSGAGNTPLSTV
FEESEREPEKLLCGSNENGVIGTSTGVSPCRNGFSSPWHVNEHEDENRFV
QSRFSSRETGGEDEVEFSAPITKMATMTLGRSRNINTWTTSRIRSKSVDN
YRCFGYNATLGTPRGRERYRGEGKTCGPRVRSKATARVLWACEQLRTKSI
TGDSEDDEDESSDDDRNASPIVNMEGTRINPETEQKKTEELRSKSRNCRS
RSRRVSCVGEFPNRVEEVPNSRTGESEEDKDQHMRKASSI*
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mRNA from alignment at tig00000110_pilon:74009..75181-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11126.t1 ID=Ggra11126.t1|Name=Ggra11126.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000110_pilon:74009..75181- (Gracilaria gracilis GNS1m male)
ATGAGCGACGGGTCACCATTCGGAAAACGAAAGAGTTGTCGTGGTCATGA
CGCTCGCAAAGCTCTTATTCTCCGGAAGTCGTTCGAGGTGTATGATAGGG
ATAAGTCTGGTGCCATCGATTGTGAGGAGCTTCGAAGCCTTCTACGGGAT
TTGGGTTGGCCGTCTGACGATGCGTTTGTGCAACGTGCAGTTAATGTTTT
GGACACAGATAACTCAGGAGAAATCGGGTTCTCCGAGTTTCTCCAGTGGA
CAGAATTTGCATACACTGCCAGAATTTTGTACAGAGACGAGATGTGTTCT
TCTCCAGTAGGAGCAGCCAGGCCCAAAGTTGATGCCTGCGAAGTTCGGGG
CGCACAATCGTCTCCTTGGATGTGCCGGGTACTGCAGGAGAACAATCAAC
AGATGCAGAAGGTACATTCCGGTGCTGGCAATACGCCGCTTTCAACGGTC
TTTGAAGAATCAGAACGTGAACCTGAAAAACTCCTCTGTGGTTCAAACGA
AAACGGTGTTATTGGCACAAGCACCGGAGTGTCGCCATGTAGAAACGGCT
TTTCTTCTCCCTGGCATGTAAATGAACATGAAGATGAGAATCGCTTTGTG
CAGAGCAGATTCTCGAGTCGCGAAACGGGAGGGGAAGATGAAGTCGAATT
CAGCGCACCCATCACGAAAATGGCCACAATGACTTTAGGACGGAGTCGAA
ACATCAACACCTGGACCACGTCTCGAATCAGGTCAAAATCAGTTGACAAC
TATCGATGCTTTGGGTATAATGCTACCCTTGGTACACCACGAGGACGAGA
GCGATATCGCGGGGAGGGAAAGACATGCGGACCTCGGGTGCGCTCAAAAG
CTACGGCACGAGTACTTTGGGCGTGCGAACAACTACGGACAAAATCCATA
ACAGGTGATTCTGAGGATGACGAAGATGAATCTTCTGACGACGATAGGAA
TGCATCACCGATCGTGAACATGGAAGGGACAAGGATAAACCCGGAAACCG
AGCAGAAAAAGACAGAAGAATTGAGGTCAAAGTCGCGGAACTGCAGATCG
CGCAGTCGGAGGGTTTCTTGCGTTGGAGAGTTTCCAAACAGGGTTGAAGA
AGTCCCAAATTCAAGAACTGGGGAATCGGAAGAAGATAAAGATCAGCATA
TGCGAAAGGCAAGTTCGATATGA
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Coding sequence (CDS) from alignment at tig00000110_pilon:74009..75181-

>Ggra11126.t1 ID=Ggra11126.t1|Name=Ggra11126.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1173bp|location=Sequence derived from alignment at tig00000110_pilon:74009..75181- (Gracilaria gracilis GNS1m male)
ATGAGCGACGGGTCACCATTCGGAAAACGAAAGAGTTGTCGTGGTCATGA
CGCTCGCAAAGCTCTTATTCTCCGGAAGTCGTTCGAGGTGTATGATAGGG
ATAAGTCTGGTGCCATCGATTGTGAGGAGCTTCGAAGCCTTCTACGGGAT
TTGGGTTGGCCGTCTGACGATGCGTTTGTGCAACGTGCAGTTAATGTTTT
GGACACAGATAACTCAGGAGAAATCGGGTTCTCCGAGTTTCTCCAGTGGA
CAGAATTTGCATACACTGCCAGAATTTTGTACAGAGACGAGATGTGTTCT
TCTCCAGTAGGAGCAGCCAGGCCCAAAGTTGATGCCTGCGAAGTTCGGGG
CGCACAATCGTCTCCTTGGATGTGCCGGGTACTGCAGGAGAACAATCAAC
AGATGCAGAAGGTACATTCCGGTGCTGGCAATACGCCGCTTTCAACGGTC
TTTGAAGAATCAGAACGTGAACCTGAAAAACTCCTCTGTGGTTCAAACGA
AAACGGTGTTATTGGCACAAGCACCGGAGTGTCGCCATGTAGAAACGGCT
TTTCTTCTCCCTGGCATGTAAATGAACATGAAGATGAGAATCGCTTTGTG
CAGAGCAGATTCTCGAGTCGCGAAACGGGAGGGGAAGATGAAGTCGAATT
CAGCGCACCCATCACGAAAATGGCCACAATGACTTTAGGACGGAGTCGAA
ACATCAACACCTGGACCACGTCTCGAATCAGGTCAAAATCAGTTGACAAC
TATCGATGCTTTGGGTATAATGCTACCCTTGGTACACCACGAGGACGAGA
GCGATATCGCGGGGAGGGAAAGACATGCGGACCTCGGGTGCGCTCAAAAG
CTACGGCACGAGTACTTTGGGCGTGCGAACAACTACGGACAAAATCCATA
ACAGGTGATTCTGAGGATGACGAAGATGAATCTTCTGACGACGATAGGAA
TGCATCACCGATCGTGAACATGGAAGGGACAAGGATAAACCCGGAAACCG
AGCAGAAAAAGACAGAAGAATTGAGGTCAAAGTCGCGGAACTGCAGATCG
CGCAGTCGGAGGGTTTCTTGCGTTGGAGAGTTTCCAAACAGGGTTGAAGA
AGTCCCAAATTCAAGAACTGGGGAATCGGAAGAAGATAAAGATCAGCATA
TGCGAAAGGCAAGTTCGATATGA
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