Ggra11125.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11125.t1
Unique NameGgra11125.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length110
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:71708..72233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11125Ggra11125Gracilaria gracilis GNS1m malegenetig00000110_pilon 71708..72233 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11125.t1Ggra11125.t1Gracilaria gracilis GNS1m malepolypeptidetig00000110_pilon 71708..72233 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11125.t1.stop1Ggra11125.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000110_pilon 71708..71710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11125.t1.CDS1Ggra11125.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000110_pilon 71708..71893 -
Ggra11125.t1.CDS2Ggra11125.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000110_pilon 71980..72035 -
Ggra11125.t1.CDS3Ggra11125.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000110_pilon 72146..72233 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11125.t1.exon1Ggra11125.t1.exon1Gracilaria gracilis GNS1m maleexontig00000110_pilon 71708..71893 -
Ggra11125.t1.exon2Ggra11125.t1.exon2Gracilaria gracilis GNS1m maleexontig00000110_pilon 71980..72035 -
Ggra11125.t1.exon3Ggra11125.t1.exon3Gracilaria gracilis GNS1m maleexontig00000110_pilon 72146..72233 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11125.t1.intron1Ggra11125.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000110_pilon 71894..71979 -
Ggra11125.t1.intron2Ggra11125.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000110_pilon 72036..72145 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11125.t1.start1Ggra11125.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000110_pilon 72231..72233 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11125.t1 ID=Ggra11125.t1|Name=Ggra11125.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=110bp
MAQGSQKLAARGPKGGRGVQKRASKMRKGKLSRKPKKQKLAEVHNKNKKL
TAAIARNIERVTGKKLQQNGGDLSLLKKVRNAAKNGGNEVSAKAAAPKFD
TRKQFRLTS*
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spliced messenger RNA

>Ggra11125.t1 ID=Ggra11125.t1|Name=Ggra11125.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=330bp|location=Sequence derived from alignment at tig00000110_pilon:71708..72233- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCAAGGATCACAGAAGCTGGCTGCTCGCGGTCCCAAGGGAGGAAG
AGGAGTACAAAAGCGCGCATCGAAGATGAGAAAAGGAAAACTATCACGAA
AGCCCAAGAAACAAAAACTTGCAGAAGTACATAACAAGAACAAGAAACTC
ACCGCGGCTATTGCAAGGAATATCGAACGGGTGACGGGTAAGAAACTTCA
GCAAAATGGGGGGGATCTCTCTCTCCTCAAGAAAGTGAGAAATGCAGCCA
AGAATGGGGGTAACGAAGTTTCCGCCAAAGCTGCTGCTCCAAAGTTTGAT
ACTAGAAAGCAATTCCGTTTGACCTCTTAA
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protein sequence of Ggra11125.t1

>Ggra11125.t1 ID=Ggra11125.t1|Name=Ggra11125.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=110bp
MAQGSQKLAARGPKGGRGVQKRASKMRKGKLSRKPKKQKLAEVHNKNKKL
TAAIARNIERVTGKKLQQNGGDLSLLKKVRNAAKNGGNEVSAKAAAPKFD
TRKQFRLTS*
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mRNA from alignment at tig00000110_pilon:71708..72233-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11125.t1 ID=Ggra11125.t1|Name=Ggra11125.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=526bp|location=Sequence derived from alignment at tig00000110_pilon:71708..72233- (Gracilaria gracilis GNS1m male)
ATGGCGCAAGGATCACAGAAGCTGGCTGCTCGCGGTCCCAAGGGAGGAAG
AGGAGTACAAAAGCGCGCATCGAAGATGAGAAAAGGAAGTAAGTTACGCC
GCTCTGTCTGCTGAAGCGAGTTTGTTCTTAACGTCAGACTTCACGTTTTA
TAGCAGAAGAATGAGCTAACGGGGACATTTTCCGCCTTCGTTGTGCAGAA
CTATCACGAAAGCCCAAGAAACAAAAACTTGCAGAAGTACATAACAAGAA
CAAGGTACGACCCGAACCGTCTTATCCACTAGAGGAGAAGCTGCAATCCG
TAAAGACTTCATCATCTGACCATATCACTTGTACCCATAGAAACTCACCG
CGGCTATTGCAAGGAATATCGAACGGGTGACGGGTAAGAAACTTCAGCAA
AATGGGGGGGATCTCTCTCTCCTCAAGAAAGTGAGAAATGCAGCCAAGAA
TGGGGGTAACGAAGTTTCCGCCAAAGCTGCTGCTCCAAAGTTTGATACTA
GAAAGCAATTCCGTTTGACCTCTTAA
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Coding sequence (CDS) from alignment at tig00000110_pilon:71708..72233-

>Ggra11125.t1 ID=Ggra11125.t1|Name=Ggra11125.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=330bp|location=Sequence derived from alignment at tig00000110_pilon:71708..72233- (Gracilaria gracilis GNS1m male)
ATGGCGCAAGGATCACAGAAGCTGGCTGCTCGCGGTCCCAAGGGAGGAAG
AGGAGTACAAAAGCGCGCATCGAAGATGAGAAAAGGAAAACTATCACGAA
AGCCCAAGAAACAAAAACTTGCAGAAGTACATAACAAGAACAAGAAACTC
ACCGCGGCTATTGCAAGGAATATCGAACGGGTGACGGGTAAGAAACTTCA
GCAAAATGGGGGGGATCTCTCTCTCCTCAAGAAAGTGAGAAATGCAGCCA
AGAATGGGGGTAACGAAGTTTCCGCCAAAGCTGCTGCTCCAAAGTTTGAT
ACTAGAAAGCAATTCCGTTTGACCTCTTAA
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