Ggra11124.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11124.t1
Unique NameGgra11124.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length518
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:68910..70463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704922.1
PFAMsOTU
Max annot lvl2759|Eukaryota
KEGG koko:K18342
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue3.95e-41
EggNOG OGsCOG5539@1|root,KOG2606@2759|Eukaryota
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11124Ggra11124Gracilaria gracilis GNS1m malegenetig00000110_pilon 68910..70463 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11124.t1.start1Ggra11124.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000110_pilon 68910..68912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11124.t1.CDS1Ggra11124.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000110_pilon 68910..70463 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11124.t1.exon1Ggra11124.t1.exon1Gracilaria gracilis GNS1m maleexontig00000110_pilon 68910..70463 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11124.t1.stop1Ggra11124.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000110_pilon 70461..70463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11124.t1Ggra11124.t1Gracilaria gracilis GNS1m malepolypeptidetig00000110_pilon 68910..70463 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11124.t1 ID=Ggra11124.t1|Name=Ggra11124.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=518bp
MRLPSLLRRMWSASSSSSSSPPPPRRRRRASAVARGAAADARLQERTVIA
AYRARVSRLADALGTRWKRFDAEPGHHGLVADIRKERADLEQAIGAYFAA
LGRRDTADVAREISVMERSDQRLAKIEQEVLAEVQRFSNAATAINARFSA
TADPAERLDVCADANDLLVELELYRDGWLTLMDEVTRQQLILASATLRNI
TDAASTSSATRNRPPPRTQKSEPSPRKRRSDPVFVVTRPGQLPAHSTQPV
TVMASDSSSSPLLFYPGPNPPPAPVSQPPSKRISSDIYNSQHVEGDTAPL
NMMISRSRTLRAMAENARNTSRPDAIDIEDATNQPSGTQPPVPMEQPSLN
VSKNMSFASALYKTYNRRVDSISDVGLRLRRSEVRGDGRCLFRSIVRCRF
HAKELPIPPERYEKDEADRLRAQTVAELRRHRELLAKFFVIEGNFAQYTK
KMSYARTYGGEPELLMLAKLLHVPIAVYISRSGKYRQIQVYGKQYRGDPL
RILYSDGIHYDALLATR*
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spliced messenger RNA

>Ggra11124.t1 ID=Ggra11124.t1|Name=Ggra11124.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00000110_pilon:68910..70463+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCTGCcgtcgctgttgcgtcgaatgtggtcggcgtcgtcttcatc
gtcgtcgtcgccgccgccgccgcgccgtcgtcgccgtgcgtctgccgtgg
cgcgcggcgccgcggcggacgcgcgcCTGCAGGAACGCACTGTTATTGCG
GCTTATCGCGCGCGCGTTTCCAGGTTGGCCGATGCGTTGGGCACGCGCTG
GAAGAGATTTGACGCCGAGCCGGGCCATCATGGCTTGGTGGCCGACATTC
GCAAGGAGAGAGCCGACTTGGAGCAGGCTATTGGCGCGTATTTCGCCGCG
TTGGGTCGCCGCGATACTGCTGACGTTGCGAGGGAGATTAGCGTTATGGA
GAGGAGCGATCAGCGCTTGGCTAAAATTGAGCAAGAAGTCCTCGCCGAGG
TGCAACGCTTTTCCAACGCTGCTACTGCTATCAATGCTCGCTTCTCAGCC
ACGGCCGACCCAGCAGAGCGCCTTGATGTTTGTGCGGACGCCAATGACTT
GCTTGTGGAGCTCGAACTGTATCGCGACGGATGGCTTACGCTCATGGATG
AAGTTACTCGTCAGCAACTAATATTGGCTTCGGCTACGCTGCGGAATATC
ACCGACGCTGCCTCCACTTCCAGTGCAACGCGGAATCGACCGCCCCCTCG
CACTCAAAAAAGCGAGCCATCCCCACGCAAGCGTCGATCCGACCCCGTGT
TCGTCGTCACTCGGCCAGGTCAACTTCCTGCCCACTCCACACAGCCCGTA
ACCGTCATGGCTTCAGATTCCTCATCGAGCCCTTTGCTGTTTTATCCTGG
TCCTAATCCACCGCCCGCTCCGGTCTCACAGCCACCTTCGAAGCGAATTT
CTTCGGATATCTATAACAGTCAACACGTGGAAGGCGATACCGCCCCGTTG
AATATGATGATCTCGCGCTCGAGAACTCTTCGTGCCATGGCGGAGAATGC
CAGGAATACTTCAAGACCAGATGCTATTGACATTGAAGACGCCACTAATC
AGCCATCTGGTACCCAACCCCCTGTTCCGATGGAGCAACCCTCGTTGAAT
GTGTCCAAGAATATGTCGTTCGCTTCTGCTTTGTACAAAACATATAATCG
GCGAGTGGATTCTATTTCGGATGTGGGTTTGAGACTGCGTCGTTCGGAAG
TACGTGGCGATGGTCGCTGTCTGTTTCGCTCTATAGTTCGCTGTAGATTC
CACGCGAAAGAACTTCCCATTCCCCCCGAACGGTATGAGAAGGATGAGGC
GGACAGGCTTCGAGCGCAAACTGTTGCAGAACTGAGGAGACATCGCGAGT
TGCTCGCCAAGTTCTTCGTGATTGAGGGAAATTTTGCTCAGTACACTAAG
AAAATGTCCTACGCAAGAACGTATGGTGGTGAGCCAGAGCTGCTCATGCT
GGCCAAGCTGTTGCACGTTCCAATAGCTGTTTATATTTCGCGGAGCGGCA
AGTATCGACAGATACAGGTTTATGGCAAACAGTATCGAGGCGATCCTTTG
CGTATCTTGTACTCTGATGGTATTCATTATGACGCGCTTCTTGCAACGAG
ATGA
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protein sequence of Ggra11124.t1

>Ggra11124.t1 ID=Ggra11124.t1|Name=Ggra11124.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=518bp
MRLPSLLRRMWSASSSSSSSPPPPRRRRRASAVARGAAADARLQERTVIA
AYRARVSRLADALGTRWKRFDAEPGHHGLVADIRKERADLEQAIGAYFAA
LGRRDTADVAREISVMERSDQRLAKIEQEVLAEVQRFSNAATAINARFSA
TADPAERLDVCADANDLLVELELYRDGWLTLMDEVTRQQLILASATLRNI
TDAASTSSATRNRPPPRTQKSEPSPRKRRSDPVFVVTRPGQLPAHSTQPV
TVMASDSSSSPLLFYPGPNPPPAPVSQPPSKRISSDIYNSQHVEGDTAPL
NMMISRSRTLRAMAENARNTSRPDAIDIEDATNQPSGTQPPVPMEQPSLN
VSKNMSFASALYKTYNRRVDSISDVGLRLRRSEVRGDGRCLFRSIVRCRF
HAKELPIPPERYEKDEADRLRAQTVAELRRHRELLAKFFVIEGNFAQYTK
KMSYARTYGGEPELLMLAKLLHVPIAVYISRSGKYRQIQVYGKQYRGDPL
RILYSDGIHYDALLATR*
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mRNA from alignment at tig00000110_pilon:68910..70463+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11124.t1 ID=Ggra11124.t1|Name=Ggra11124.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00000110_pilon:68910..70463+ (Gracilaria gracilis GNS1m male)
ATGCGCCTGCcgtcgctgttgcgtcgaatgtggtcggcgtcgtcttcatc
gtcgtcgtcgccgccgccgccgcgccgtcgtcgccgtgcgtctgccgtgg
cgcgcggcgccgcggcggacgcgcgcCTGCAGGAACGCACTGTTATTGCG
GCTTATCGCGCGCGCGTTTCCAGGTTGGCCGATGCGTTGGGCACGCGCTG
GAAGAGATTTGACGCCGAGCCGGGCCATCATGGCTTGGTGGCCGACATTC
GCAAGGAGAGAGCCGACTTGGAGCAGGCTATTGGCGCGTATTTCGCCGCG
TTGGGTCGCCGCGATACTGCTGACGTTGCGAGGGAGATTAGCGTTATGGA
GAGGAGCGATCAGCGCTTGGCTAAAATTGAGCAAGAAGTCCTCGCCGAGG
TGCAACGCTTTTCCAACGCTGCTACTGCTATCAATGCTCGCTTCTCAGCC
ACGGCCGACCCAGCAGAGCGCCTTGATGTTTGTGCGGACGCCAATGACTT
GCTTGTGGAGCTCGAACTGTATCGCGACGGATGGCTTACGCTCATGGATG
AAGTTACTCGTCAGCAACTAATATTGGCTTCGGCTACGCTGCGGAATATC
ACCGACGCTGCCTCCACTTCCAGTGCAACGCGGAATCGACCGCCCCCTCG
CACTCAAAAAAGCGAGCCATCCCCACGCAAGCGTCGATCCGACCCCGTGT
TCGTCGTCACTCGGCCAGGTCAACTTCCTGCCCACTCCACACAGCCCGTA
ACCGTCATGGCTTCAGATTCCTCATCGAGCCCTTTGCTGTTTTATCCTGG
TCCTAATCCACCGCCCGCTCCGGTCTCACAGCCACCTTCGAAGCGAATTT
CTTCGGATATCTATAACAGTCAACACGTGGAAGGCGATACCGCCCCGTTG
AATATGATGATCTCGCGCTCGAGAACTCTTCGTGCCATGGCGGAGAATGC
CAGGAATACTTCAAGACCAGATGCTATTGACATTGAAGACGCCACTAATC
AGCCATCTGGTACCCAACCCCCTGTTCCGATGGAGCAACCCTCGTTGAAT
GTGTCCAAGAATATGTCGTTCGCTTCTGCTTTGTACAAAACATATAATCG
GCGAGTGGATTCTATTTCGGATGTGGGTTTGAGACTGCGTCGTTCGGAAG
TACGTGGCGATGGTCGCTGTCTGTTTCGCTCTATAGTTCGCTGTAGATTC
CACGCGAAAGAACTTCCCATTCCCCCCGAACGGTATGAGAAGGATGAGGC
GGACAGGCTTCGAGCGCAAACTGTTGCAGAACTGAGGAGACATCGCGAGT
TGCTCGCCAAGTTCTTCGTGATTGAGGGAAATTTTGCTCAGTACACTAAG
AAAATGTCCTACGCAAGAACGTATGGTGGTGAGCCAGAGCTGCTCATGCT
GGCCAAGCTGTTGCACGTTCCAATAGCTGTTTATATTTCGCGGAGCGGCA
AGTATCGACAGATACAGGTTTATGGCAAACAGTATCGAGGCGATCCTTTG
CGTATCTTGTACTCTGATGGTATTCATTATGACGCGCTTCTTGCAACGAG
ATGA
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Coding sequence (CDS) from alignment at tig00000110_pilon:68910..70463+

>Ggra11124.t1 ID=Ggra11124.t1|Name=Ggra11124.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1554bp|location=Sequence derived from alignment at tig00000110_pilon:68910..70463+ (Gracilaria gracilis GNS1m male)
ATGCGCCTGCcgtcgctgttgcgtcgaatgtggtcggcgtcgtcttcatc
gtcgtcgtcgccgccgccgccgcgccgtcgtcgccgtgcgtctgccgtgg
cgcgcggcgccgcggcggacgcgcgcCTGCAGGAACGCACTGTTATTGCG
GCTTATCGCGCGCGCGTTTCCAGGTTGGCCGATGCGTTGGGCACGCGCTG
GAAGAGATTTGACGCCGAGCCGGGCCATCATGGCTTGGTGGCCGACATTC
GCAAGGAGAGAGCCGACTTGGAGCAGGCTATTGGCGCGTATTTCGCCGCG
TTGGGTCGCCGCGATACTGCTGACGTTGCGAGGGAGATTAGCGTTATGGA
GAGGAGCGATCAGCGCTTGGCTAAAATTGAGCAAGAAGTCCTCGCCGAGG
TGCAACGCTTTTCCAACGCTGCTACTGCTATCAATGCTCGCTTCTCAGCC
ACGGCCGACCCAGCAGAGCGCCTTGATGTTTGTGCGGACGCCAATGACTT
GCTTGTGGAGCTCGAACTGTATCGCGACGGATGGCTTACGCTCATGGATG
AAGTTACTCGTCAGCAACTAATATTGGCTTCGGCTACGCTGCGGAATATC
ACCGACGCTGCCTCCACTTCCAGTGCAACGCGGAATCGACCGCCCCCTCG
CACTCAAAAAAGCGAGCCATCCCCACGCAAGCGTCGATCCGACCCCGTGT
TCGTCGTCACTCGGCCAGGTCAACTTCCTGCCCACTCCACACAGCCCGTA
ACCGTCATGGCTTCAGATTCCTCATCGAGCCCTTTGCTGTTTTATCCTGG
TCCTAATCCACCGCCCGCTCCGGTCTCACAGCCACCTTCGAAGCGAATTT
CTTCGGATATCTATAACAGTCAACACGTGGAAGGCGATACCGCCCCGTTG
AATATGATGATCTCGCGCTCGAGAACTCTTCGTGCCATGGCGGAGAATGC
CAGGAATACTTCAAGACCAGATGCTATTGACATTGAAGACGCCACTAATC
AGCCATCTGGTACCCAACCCCCTGTTCCGATGGAGCAACCCTCGTTGAAT
GTGTCCAAGAATATGTCGTTCGCTTCTGCTTTGTACAAAACATATAATCG
GCGAGTGGATTCTATTTCGGATGTGGGTTTGAGACTGCGTCGTTCGGAAG
TACGTGGCGATGGTCGCTGTCTGTTTCGCTCTATAGTTCGCTGTAGATTC
CACGCGAAAGAACTTCCCATTCCCCCCGAACGGTATGAGAAGGATGAGGC
GGACAGGCTTCGAGCGCAAACTGTTGCAGAACTGAGGAGACATCGCGAGT
TGCTCGCCAAGTTCTTCGTGATTGAGGGAAATTTTGCTCAGTACACTAAG
AAAATGTCCTACGCAAGAACGTATGGTGGTGAGCCAGAGCTGCTCATGCT
GGCCAAGCTGTTGCACGTTCCAATAGCTGTTTATATTTCGCGGAGCGGCA
AGTATCGACAGATACAGGTTTATGGCAAACAGTATCGAGGCGATCCTTTG
CGTATCTTGTACTCTGATGGTATTCATTATGACGCGCTTCTTGCAACGAG
ATGA
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