Ggra1112.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1112.t1
Unique NameGgra1112.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length307
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000945_piloncontigtig00000945_pilon:73791..74711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1112Ggra1112Gracilaria gracilis GNS1m malegenetig00000945_pilon 73791..74711 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1112.t1.stop1Ggra1112.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000945_pilon 73791..73793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1112.t1.CDS1Ggra1112.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000945_pilon 73791..74711 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1112.t1.exon1Ggra1112.t1.exon1Gracilaria gracilis GNS1m maleexontig00000945_pilon 73791..74711 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1112.t1.start1Ggra1112.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000945_pilon 74709..74711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1112.t1Ggra1112.t1Gracilaria gracilis GNS1m malepolypeptidetig00000945_pilon 73791..74711 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1112.t1 ID=Ggra1112.t1|Name=Ggra1112.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=307bp
MPHTPFFVAPLLLLPRASPPAVHTSARRRAALTPRASASDGPPPPPPPGP
PGEPPREPPNEADARYSRFSEFAAHGGDARLQEQLVSEVLWGATRAATTQ
SMESTIQGEMHAVSELLSELYSKSRRDLQKRNHELAMRASLPSISKWNQQ
LMRRHKASKLQRSQISKELAIVHALLRRTARSRSRSRSNRNARGAAAAAA
VPLLQQPQPQPQPQPQTKSVQLTLLRAPNALLLTLVLCAIALESFENVVS
QENGPSTLAHYSAFGTLFVLCAAYLHALRSAHARALHQLRGRSSSPFVSA
RHRRKR*
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spliced messenger RNA

>Ggra1112.t1 ID=Ggra1112.t1|Name=Ggra1112.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000945_pilon:73791..74711- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCACACGCCGTTCTTCGTCGCGCCGCTGCTGCTGCTGCCGCGCGC
GTCGCCGCCCGCCGTGCACACCAGCGCGCGCCGCCGCGCCGCCCTCACGC
CGCGCGCCAGCGCTTCCGACGGGCCGCCGCCGCCGCCGCCGCCAGGGCCG
CCGGGAGAGCCGCCGCGCGAGCCGCCGAACGAGGCGGACGCGCGCTACTC
ACGCTTCTCCGAGTTTGCCGCGCACGGCGGCGACGCGCGCCTGCAGGAGC
AGCTGGTGAGCGAGGTGCTATGGGGCGCCACGCGCGCCGCCACCACGCAG
AGCATGGAGTCCACCATCCAGGGCGAGATGCACGCCGTGTCCGAGCTGCT
GTCCGAGCTGTACTCCAAGTCGCGCCGCGACCTGCAAAAGCGCAACCACG
AGCTGGCCATGCGCGCCTCGCTGCCCTCCATCTCCAAGTGGAACCAGCAG
CTCATGCGCCGCCACAAGGCGTCCAAGCTGCAGCGCTCGCAGATCTCAAA
GGAGCTTGCTATCGTGCACGCTTTGCTCAGACGTACTGCTCGCTCGCGCT
CGCGCTCGCGCTCCAACCGCAACGCCCGTGGTGCTGCCGCCGCCGCCGCC
GTGCCTCTGCTGCAACAGCCGCAGCCGCAGCCGCAGCCGCAGCCGCAAAC
GAAGAGCGTGCAGTTGACGTTGCTGCGTGCGCCCAATGCGCTCTTGCTCA
CCTTGGTGCTGTGCGCCATTGCGCTCGAGTCGTTTGAGAACGTTGTGTCG
CAGGAGAATGGGCCGTCTACCTTGGCGCACTACTCGGCCTTCGGCACGCT
CTTCGTGCTGTGCGCCGCGTACCTTCACGCCTTGCGTTCGGCGCATGCGC
GCGCTCTGCATCAGCTGCGTGGACGCTCGTCGTCGCCGTTTGTGAGCGCG
CGCCACCGCCGCAAGCGATGA
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protein sequence of Ggra1112.t1

>Ggra1112.t1 ID=Ggra1112.t1|Name=Ggra1112.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=307bp
MPHTPFFVAPLLLLPRASPPAVHTSARRRAALTPRASASDGPPPPPPPGP
PGEPPREPPNEADARYSRFSEFAAHGGDARLQEQLVSEVLWGATRAATTQ
SMESTIQGEMHAVSELLSELYSKSRRDLQKRNHELAMRASLPSISKWNQQ
LMRRHKASKLQRSQISKELAIVHALLRRTARSRSRSRSNRNARGAAAAAA
VPLLQQPQPQPQPQPQTKSVQLTLLRAPNALLLTLVLCAIALESFENVVS
QENGPSTLAHYSAFGTLFVLCAAYLHALRSAHARALHQLRGRSSSPFVSA
RHRRKR*
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mRNA from alignment at tig00000945_pilon:73791..74711-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1112.t1 ID=Ggra1112.t1|Name=Ggra1112.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000945_pilon:73791..74711- (Gracilaria gracilis GNS1m male)
ATGCCGCACACGCCGTTCTTCGTCGCGCCGCTGCTGCTGCTGCCGCGCGC
GTCGCCGCCCGCCGTGCACACCAGCGCGCGCCGCCGCGCCGCCCTCACGC
CGCGCGCCAGCGCTTCCGACGGGCCGCCGCCGCCGCCGCCGCCAGGGCCG
CCGGGAGAGCCGCCGCGCGAGCCGCCGAACGAGGCGGACGCGCGCTACTC
ACGCTTCTCCGAGTTTGCCGCGCACGGCGGCGACGCGCGCCTGCAGGAGC
AGCTGGTGAGCGAGGTGCTATGGGGCGCCACGCGCGCCGCCACCACGCAG
AGCATGGAGTCCACCATCCAGGGCGAGATGCACGCCGTGTCCGAGCTGCT
GTCCGAGCTGTACTCCAAGTCGCGCCGCGACCTGCAAAAGCGCAACCACG
AGCTGGCCATGCGCGCCTCGCTGCCCTCCATCTCCAAGTGGAACCAGCAG
CTCATGCGCCGCCACAAGGCGTCCAAGCTGCAGCGCTCGCAGATCTCAAA
GGAGCTTGCTATCGTGCACGCTTTGCTCAGACGTACTGCTCGCTCGCGCT
CGCGCTCGCGCTCCAACCGCAACGCCCGTGGTGCTGCCGCCGCCGCCGCC
GTGCCTCTGCTGCAACAGCCGCAGCCGCAGCCGCAGCCGCAGCCGCAAAC
GAAGAGCGTGCAGTTGACGTTGCTGCGTGCGCCCAATGCGCTCTTGCTCA
CCTTGGTGCTGTGCGCCATTGCGCTCGAGTCGTTTGAGAACGTTGTGTCG
CAGGAGAATGGGCCGTCTACCTTGGCGCACTACTCGGCCTTCGGCACGCT
CTTCGTGCTGTGCGCCGCGTACCTTCACGCCTTGCGTTCGGCGCATGCGC
GCGCTCTGCATCAGCTGCGTGGACGCTCGTCGTCGCCGTTTGTGAGCGCG
CGCCACCGCCGCAAGCGATGA
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Coding sequence (CDS) from alignment at tig00000945_pilon:73791..74711-

>Ggra1112.t1 ID=Ggra1112.t1|Name=Ggra1112.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=921bp|location=Sequence derived from alignment at tig00000945_pilon:73791..74711- (Gracilaria gracilis GNS1m male)
ATGCCGCACACGCCGTTCTTCGTCGCGCCGCTGCTGCTGCTGCCGCGCGC
GTCGCCGCCCGCCGTGCACACCAGCGCGCGCCGCCGCGCCGCCCTCACGC
CGCGCGCCAGCGCTTCCGACGGGCCGCCGCCGCCGCCGCCGCCAGGGCCG
CCGGGAGAGCCGCCGCGCGAGCCGCCGAACGAGGCGGACGCGCGCTACTC
ACGCTTCTCCGAGTTTGCCGCGCACGGCGGCGACGCGCGCCTGCAGGAGC
AGCTGGTGAGCGAGGTGCTATGGGGCGCCACGCGCGCCGCCACCACGCAG
AGCATGGAGTCCACCATCCAGGGCGAGATGCACGCCGTGTCCGAGCTGCT
GTCCGAGCTGTACTCCAAGTCGCGCCGCGACCTGCAAAAGCGCAACCACG
AGCTGGCCATGCGCGCCTCGCTGCCCTCCATCTCCAAGTGGAACCAGCAG
CTCATGCGCCGCCACAAGGCGTCCAAGCTGCAGCGCTCGCAGATCTCAAA
GGAGCTTGCTATCGTGCACGCTTTGCTCAGACGTACTGCTCGCTCGCGCT
CGCGCTCGCGCTCCAACCGCAACGCCCGTGGTGCTGCCGCCGCCGCCGCC
GTGCCTCTGCTGCAACAGCCGCAGCCGCAGCCGCAGCCGCAGCCGCAAAC
GAAGAGCGTGCAGTTGACGTTGCTGCGTGCGCCCAATGCGCTCTTGCTCA
CCTTGGTGCTGTGCGCCATTGCGCTCGAGTCGTTTGAGAACGTTGTGTCG
CAGGAGAATGGGCCGTCTACCTTGGCGCACTACTCGGCCTTCGGCACGCT
CTTCGTGCTGTGCGCCGCGTACCTTCACGCCTTGCGTTCGGCGCATGCGC
GCGCTCTGCATCAGCTGCGTGGACGCTCGTCGTCGCCGTTTGTGAGCGCG
CGCCACCGCCGCAAGCGATGA
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