Ggra11091.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11091.t1
Unique NameGgra11091.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:94940..95479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_90850
PFAMsABC_membrane,ABC_tran
Max annot lvl2759|Eukaryota
Evalue2.16e-20
EggNOG OGsCOG1132@1|root,KOG0054@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
COG categoryV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11091Ggra11091Gracilaria gracilis GNS1m malegenetig00000207_pilon 94940..95479 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11091.t1.start1Ggra11091.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 94940..94942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11091.t1.CDS1Ggra11091.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 94940..95479 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11091.t1.exon1Ggra11091.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 94940..95479 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11091.t1.stop1Ggra11091.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 95477..95479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11091.t1Ggra11091.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 94940..95479 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11091.t1 ID=Ggra11091.t1|Name=Ggra11091.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=180bp
MAAFASATPLQLAQQARSPSSTCPRTVPTMGPWKKGEKDEAFRQQQEILA
RRRDAKRKEEYFEEVQERRETVEEYFDNRMLKVKEGEDPIHEWRRMKENG
FIDEDVGYTEEEESGIPIPMASFGIPKYDRGARFDLKLPHVEHGYTDPDA
DVMAKAANAFKNMFGFGKKSDSDGKEGEK*
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spliced messenger RNA

>Ggra11091.t1 ID=Ggra11091.t1|Name=Ggra11091.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000207_pilon:94940..95479+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCATTCGCGTCTGCAACACCGCTGCAACTAGCGCAGCAGGCTCG
CTCCCCGAGCTCAACATGCCCTCGCACAGTGCCTACAATGGGACCATGGA
AGAAAGGTGAGAAGGACGAGGCTTTCCGCCAACAGCAAGAGATACTCGCT
CGTCGTCGCGATGCGAAACGAAAGGAGGAGTACTTTGAGGAGGTTCAAGA
AAGGCGAGAAACCGTTGAAGAATACTTCGATAATCGCATGCTCAAGGTCA
AAGAAGGCGAGGACCCCATTCATGAGTGGCGTCGCATGAAGGAAAACGGC
TTCATTGACGAAGATGTCGGTTACACCGAGGAGGAAGAGAGCGGAATTCC
AATTCCAATGGCAAGCTTTGGTATTCCCAAGTATGATAGAGGTGCACGCT
TTGACCTTAAGTTGCCTCATGTGGAACATGGATACACTGACCCAGACGCT
GATGTCATGGCAAAGGCTGCAAACGCCTTTAAGAACATGTTCGGTTTTGG
GAAAAAGAGTGACTCCGATGGCAAAGAGGGGGAGAAATGA
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protein sequence of Ggra11091.t1

>Ggra11091.t1 ID=Ggra11091.t1|Name=Ggra11091.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=180bp
MAAFASATPLQLAQQARSPSSTCPRTVPTMGPWKKGEKDEAFRQQQEILA
RRRDAKRKEEYFEEVQERRETVEEYFDNRMLKVKEGEDPIHEWRRMKENG
FIDEDVGYTEEEESGIPIPMASFGIPKYDRGARFDLKLPHVEHGYTDPDA
DVMAKAANAFKNMFGFGKKSDSDGKEGEK*
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mRNA from alignment at tig00000207_pilon:94940..95479+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11091.t1 ID=Ggra11091.t1|Name=Ggra11091.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000207_pilon:94940..95479+ (Gracilaria gracilis GNS1m male)
ATGGCTGCATTCGCGTCTGCAACACCGCTGCAACTAGCGCAGCAGGCTCG
CTCCCCGAGCTCAACATGCCCTCGCACAGTGCCTACAATGGGACCATGGA
AGAAAGGTGAGAAGGACGAGGCTTTCCGCCAACAGCAAGAGATACTCGCT
CGTCGTCGCGATGCGAAACGAAAGGAGGAGTACTTTGAGGAGGTTCAAGA
AAGGCGAGAAACCGTTGAAGAATACTTCGATAATCGCATGCTCAAGGTCA
AAGAAGGCGAGGACCCCATTCATGAGTGGCGTCGCATGAAGGAAAACGGC
TTCATTGACGAAGATGTCGGTTACACCGAGGAGGAAGAGAGCGGAATTCC
AATTCCAATGGCAAGCTTTGGTATTCCCAAGTATGATAGAGGTGCACGCT
TTGACCTTAAGTTGCCTCATGTGGAACATGGATACACTGACCCAGACGCT
GATGTCATGGCAAAGGCTGCAAACGCCTTTAAGAACATGTTCGGTTTTGG
GAAAAAGAGTGACTCCGATGGCAAAGAGGGGGAGAAATGA
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Coding sequence (CDS) from alignment at tig00000207_pilon:94940..95479+

>Ggra11091.t1 ID=Ggra11091.t1|Name=Ggra11091.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=540bp|location=Sequence derived from alignment at tig00000207_pilon:94940..95479+ (Gracilaria gracilis GNS1m male)
ATGGCTGCATTCGCGTCTGCAACACCGCTGCAACTAGCGCAGCAGGCTCG
CTCCCCGAGCTCAACATGCCCTCGCACAGTGCCTACAATGGGACCATGGA
AGAAAGGTGAGAAGGACGAGGCTTTCCGCCAACAGCAAGAGATACTCGCT
CGTCGTCGCGATGCGAAACGAAAGGAGGAGTACTTTGAGGAGGTTCAAGA
AAGGCGAGAAACCGTTGAAGAATACTTCGATAATCGCATGCTCAAGGTCA
AAGAAGGCGAGGACCCCATTCATGAGTGGCGTCGCATGAAGGAAAACGGC
TTCATTGACGAAGATGTCGGTTACACCGAGGAGGAAGAGAGCGGAATTCC
AATTCCAATGGCAAGCTTTGGTATTCCCAAGTATGATAGAGGTGCACGCT
TTGACCTTAAGTTGCCTCATGTGGAACATGGATACACTGACCCAGACGCT
GATGTCATGGCAAAGGCTGCAAACGCCTTTAAGAACATGTTCGGTTTTGG
GAAAAAGAGTGACTCCGATGGCAAAGAGGGGGAGAAATGA
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