Ggra11089.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra11089.t1
Unique Name	Ggra11089.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	367

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000207_pilon	contig	tig00000207_pilon:90489..91589 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3075.A0A087SDE7
PFAMs	UbiA
Max annot lvl	3041\|Chlorophyta
KEGG rclass	RC01786
KEGG ko	ko:K02257
KEGG Reaction	R07411
KEGG Pathway	ko00190,ko00860,ko01100,ko01110,ko04714,map00190,map00860,map01100,map01110,map04714
KEGG Module	M00154
Evalue	9.07e-71
EggNOG OGs	COG0109@1\|root,KOG1380@2759\|Eukaryota,37J9A@33090\|Viridiplantae,34H13@3041\|Chlorophyta
EC	2.5.1.141
Description	UbiA prenyltransferase family
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000,ko01006,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra11089	Ggra11089	Gracilaria gracilis GNS1m male	gene	tig00000207_pilon 90489..91589 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11089.t1.start1	Ggra11089.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000207_pilon 90489..90491 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11089.t1.CDS1	Ggra11089.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000207_pilon 90489..91589 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11089.t1.exon1	Ggra11089.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000207_pilon 90489..91589 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11089.t1.stop1	Ggra11089.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000207_pilon 91587..91589 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11089.t1	Ggra11089.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000207_pilon 90489..91589 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000207_pilon:90489..91589+
coding sequence from alignment at tig00000207_pilon:90489..91589+

mRNA sequence

>Ggra11089.t1 ID=Ggra11089.t1|Name=Ggra11089.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=367bp
MATLNCHISQTKHLIRDLLKLSKYRLSGLVAFTAGVGYVARADPQDPDPI
AAANASTKYYRQLLATTTGTWLAAASANTLNQMYEIRSDALMARTRLRPL
PTGRIGLAQAACFALATGVSGVGLLATETNKTTAGLAAANVILYSAVYTP
LKAISTVNTWVGAVVGALPPMHGWVAASGGKLFGERERGAWALGSLLFLW
QIPHFHALAVVSRGDYAAGGLKMLAVSNPRLNADWAKWTAAAMFPIGGLF
TLSGVTSAMFAWESALLGWWMYRGALNMVAEPTSTAAAKQLFRASIWYLP
ISMSLLLAHQVPYASTLEHAQTKAPITHVKEIRLQQPWEIMAPFPFLPVP
CGVPAVVLETQDGNLP*

spliced messenger RNA

>Ggra11089.t1 ID=Ggra11089.t1|Name=Ggra11089.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00000207_pilon:90489..91589+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACGTTAAACTGTCATATATCACAAACGAAACACCTAATTCGCGA
CCTGCTGAAACTATCCAAATACCGTCTCAGCGGATTGGTAGCCTTCACAG
CGGGCGTGGGCTATGTCGCTCGCGCCGATCCTCAAGATCCCGATCCAATC
GCCGCTGCGAACGCTTCTACTAAATACTACCGTCAGCTGCTCGCCACAAC
CACGGGAACATGGCTTGCGGCGGCAAGCGCAAACACCCTCAATCAGATGT
ATGAGATTCGATCCGATGCTCTCATGGCACGCACGCGGCTGCGACCGCTA
CCGACAGGGCGCATTGGCCTAGCACAAGCTGCGTGTTTCGCCCTTGCTAC
AGGCGTTTCCGGCGTTGGCTTGCTAGCCACGGAGACAAATAAGACTACGG
CTGGGTTGGCCGCCGCCAACGTAATCCTGTACAGTGCCGTGTACACGCCT
CTCAAAGCAATCTCGACGGTGAATACCTGGGTCGGCGCGGTGGTGGGAGC
GCTTCCGCCGATGCACGGATGGGTTGCAGCAAGTGGTGGAAAGCTGTTTG
GCGAACGTGAGCGCGGCGCGTGGGCTCTTGGTTCGCTGTTGTTCCTGTGG
CAGATTCCCCACTTTCACGCACTGGCCGTCGTTTCTCGTGGCGATTATGC
AGCGGGTGGATTGAAGATGCTGGCCGTCAGTAATCCGCGCTTGAATGCAG
ATTGGGCAAAGTGGACTGCCGCTGCAATGTTTCCTATTGGTGGCTTGTTC
ACTTTAAGCGGCGTTACAAGCGCCATGTTTGCATGGGAATCTGCATTACT
TGGCTGGTGGATGTATCGTGGCGCGCTTAATATGGTGGCGGAACCGACGT
CGACTGCGGCAGCGAAGCAACTTTTTCGAGCTTCTATATGGTATCTGCCG
ATATCCATGTCTCTGCTTCTGGCTCACCAAGTGCCTTATGCTTCCACACT
TGAACATGCACAGACAAAGGCGCCAATTACGCACGTGAAGGAGATTCGCT
TGCAGCAGCCGTGGGAAATTATGGCACCTTTTCCGTTCTTACCGGTCCCC
TGCGGCGTACCAGCGGTGGTTTTGGAAACACAAGACGGAAACCTGCCTTG
A

protein sequence of Ggra11089.t1

>Ggra11089.t1 ID=Ggra11089.t1|Name=Ggra11089.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=367bp
MATLNCHISQTKHLIRDLLKLSKYRLSGLVAFTAGVGYVARADPQDPDPI
AAANASTKYYRQLLATTTGTWLAAASANTLNQMYEIRSDALMARTRLRPL
PTGRIGLAQAACFALATGVSGVGLLATETNKTTAGLAAANVILYSAVYTP
LKAISTVNTWVGAVVGALPPMHGWVAASGGKLFGERERGAWALGSLLFLW
QIPHFHALAVVSRGDYAAGGLKMLAVSNPRLNADWAKWTAAAMFPIGGLF
TLSGVTSAMFAWESALLGWWMYRGALNMVAEPTSTAAAKQLFRASIWYLP
ISMSLLLAHQVPYASTLEHAQTKAPITHVKEIRLQQPWEIMAPFPFLPVP
CGVPAVVLETQDGNLP*

mRNA from alignment at tig00000207_pilon:90489..91589+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra11089.t1 ID=Ggra11089.t1|Name=Ggra11089.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00000207_pilon:90489..91589+ (Gracilaria gracilis GNS1m male)
ATGGCCACGTTAAACTGTCATATATCACAAACGAAACACCTAATTCGCGA
CCTGCTGAAACTATCCAAATACCGTCTCAGCGGATTGGTAGCCTTCACAG
CGGGCGTGGGCTATGTCGCTCGCGCCGATCCTCAAGATCCCGATCCAATC
GCCGCTGCGAACGCTTCTACTAAATACTACCGTCAGCTGCTCGCCACAAC
CACGGGAACATGGCTTGCGGCGGCAAGCGCAAACACCCTCAATCAGATGT
ATGAGATTCGATCCGATGCTCTCATGGCACGCACGCGGCTGCGACCGCTA
CCGACAGGGCGCATTGGCCTAGCACAAGCTGCGTGTTTCGCCCTTGCTAC
AGGCGTTTCCGGCGTTGGCTTGCTAGCCACGGAGACAAATAAGACTACGG
CTGGGTTGGCCGCCGCCAACGTAATCCTGTACAGTGCCGTGTACACGCCT
CTCAAAGCAATCTCGACGGTGAATACCTGGGTCGGCGCGGTGGTGGGAGC
GCTTCCGCCGATGCACGGATGGGTTGCAGCAAGTGGTGGAAAGCTGTTTG
GCGAACGTGAGCGCGGCGCGTGGGCTCTTGGTTCGCTGTTGTTCCTGTGG
CAGATTCCCCACTTTCACGCACTGGCCGTCGTTTCTCGTGGCGATTATGC
AGCGGGTGGATTGAAGATGCTGGCCGTCAGTAATCCGCGCTTGAATGCAG
ATTGGGCAAAGTGGACTGCCGCTGCAATGTTTCCTATTGGTGGCTTGTTC
ACTTTAAGCGGCGTTACAAGCGCCATGTTTGCATGGGAATCTGCATTACT
TGGCTGGTGGATGTATCGTGGCGCGCTTAATATGGTGGCGGAACCGACGT
CGACTGCGGCAGCGAAGCAACTTTTTCGAGCTTCTATATGGTATCTGCCG
ATATCCATGTCTCTGCTTCTGGCTCACCAAGTGCCTTATGCTTCCACACT
TGAACATGCACAGACAAAGGCGCCAATTACGCACGTGAAGGAGATTCGCT
TGCAGCAGCCGTGGGAAATTATGGCACCTTTTCCGTTCTTACCGGTCCCC
TGCGGCGTACCAGCGGTGGTTTTGGAAACACAAGACGGAAACCTGCCTTG
A

Coding sequence (CDS) from alignment at tig00000207_pilon:90489..91589+

>Ggra11089.t1 ID=Ggra11089.t1|Name=Ggra11089.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1101bp|location=Sequence derived from alignment at tig00000207_pilon:90489..91589+ (Gracilaria gracilis GNS1m male)
ATGGCCACGTTAAACTGTCATATATCACAAACGAAACACCTAATTCGCGA
CCTGCTGAAACTATCCAAATACCGTCTCAGCGGATTGGTAGCCTTCACAG
CGGGCGTGGGCTATGTCGCTCGCGCCGATCCTCAAGATCCCGATCCAATC
GCCGCTGCGAACGCTTCTACTAAATACTACCGTCAGCTGCTCGCCACAAC
CACGGGAACATGGCTTGCGGCGGCAAGCGCAAACACCCTCAATCAGATGT
ATGAGATTCGATCCGATGCTCTCATGGCACGCACGCGGCTGCGACCGCTA
CCGACAGGGCGCATTGGCCTAGCACAAGCTGCGTGTTTCGCCCTTGCTAC
AGGCGTTTCCGGCGTTGGCTTGCTAGCCACGGAGACAAATAAGACTACGG
CTGGGTTGGCCGCCGCCAACGTAATCCTGTACAGTGCCGTGTACACGCCT
CTCAAAGCAATCTCGACGGTGAATACCTGGGTCGGCGCGGTGGTGGGAGC
GCTTCCGCCGATGCACGGATGGGTTGCAGCAAGTGGTGGAAAGCTGTTTG
GCGAACGTGAGCGCGGCGCGTGGGCTCTTGGTTCGCTGTTGTTCCTGTGG
CAGATTCCCCACTTTCACGCACTGGCCGTCGTTTCTCGTGGCGATTATGC
AGCGGGTGGATTGAAGATGCTGGCCGTCAGTAATCCGCGCTTGAATGCAG
ATTGGGCAAAGTGGACTGCCGCTGCAATGTTTCCTATTGGTGGCTTGTTC
ACTTTAAGCGGCGTTACAAGCGCCATGTTTGCATGGGAATCTGCATTACT
TGGCTGGTGGATGTATCGTGGCGCGCTTAATATGGTGGCGGAACCGACGT
CGACTGCGGCAGCGAAGCAACTTTTTCGAGCTTCTATATGGTATCTGCCG
ATATCCATGTCTCTGCTTCTGGCTCACCAAGTGCCTTATGCTTCCACACT
TGAACATGCACAGACAAAGGCGCCAATTACGCACGTGAAGGAGATTCGCT
TGCAGCAGCCGTGGGAAATTATGGCACCTTTTCCGTTCTTACCGGTCCCC
TGCGGCGTACCAGCGGTGGTTTTGGAAACACAAGACGGAAACCTGCCTTG
A