Ggra11087.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11087.t1
Unique NameGgra11087.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:84996..86081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703145.1
PFAMsIPK
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K07756
KEGG ReactionR09087,R10548
KEGG Pathwayko04070,ko04138,map04070,map04138
Evalue2.55e-59
EggNOG OGsKOG1620@1|root,KOG1620@2759|Eukaryota
EC2.7.4.21
Descriptioninositol phosphate biosynthetic process
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11087Ggra11087Gracilaria gracilis GNS1m malegenetig00000207_pilon 84996..86081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11087.t1Ggra11087.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 84996..86081 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11087.t1.stop1Ggra11087.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 84996..84998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11087.t1.CDS1Ggra11087.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 84996..85619 -
Ggra11087.t1.CDS2Ggra11087.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000207_pilon 85794..86081 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11087.t1.exon1Ggra11087.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 84996..85619 -
Ggra11087.t1.exon2Ggra11087.t1.exon2Gracilaria gracilis GNS1m maleexontig00000207_pilon 85794..86081 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11087.t1.intron1Ggra11087.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000207_pilon 85620..85793 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11087.t1.start1Ggra11087.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 86079..86081 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11087.t1 ID=Ggra11087.t1|Name=Ggra11087.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=304bp
MEGGSCSQLPCDDAPYPHQVGGHGQLCMTSSGRILKPLLSKEYAFYEYIN
SEQLPHDMRWIRRHTPRFYGHVDVASAAAKKGRPRAGAGAGASGAGLGDG
SDSNGADMRIELEDINRQFAIPCVIDCKIGTRHYDDDASEEKRRRHIEKA
KATTSAKCGIRFTGMQSFKRSSNAFSNKGVFESRDKYHGRALREEDLVPQ
LTWFFHDNFRVRTECVSAILKRIVSLRAELLQQGHFYFYSSSLLLVYEGS
VSAHSPANVDVRMIDFAHTVRSFGQRDDGYLKGVEYLIAMLGRIVRAQQH
NNA*
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spliced messenger RNA

>Ggra11087.t1 ID=Ggra11087.t1|Name=Ggra11087.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000207_pilon:84996..86081- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGGCGGCTCGTGCTCTCAACTGCCATGTGACGACGCGCCGTACCC
GCACCAGGTGGGCGGGCACGGGCAGCTGTGCATGACGTCGTCCGGCCGCA
TCCTCAAGCCGCTGCTCAGCAAGGAGTACGCCTTTTACGAGTACATCAAC
AGCGAGCAGTTGCCGCACGACATGCGCTGGATTCGCCGCCACACGCCGCG
CTTCTACGGACATGTGGACGTTGCGTCCGCGGCCGCCAAGAAGGGCCGGC
CGCGCGCCGGCGCCGGCGCGGGCGCCAGCGGCGCGGGCCTGGGCGACGGC
AGCGACTCCAACGGGGCGGACATGCGCATCGAGCTGGAGGACATCAACAG
GCAGTTTGCGATCCCGTGCGTGATCGACTGCAAGATTGGCACGCGCCACT
ACGACGACGACGCGTCGGAGGAGAAGCGCCGGCGACACATTGAAAAGGCC
AAGGCGACGACGTCGGCCAAGTGCGGCATTCGCTTCACGGGCATGCAGTC
GTTCAAGCGCTCGAGCAACGCGTTCAGCAACAAGGGCGTGTTCGAGAGCC
GCGACAAGTACCACGGGCGCGCGCTGCGCGAGGAGGACCTGGTGCCGCAG
CTGACGTGGTTCTTCCACGACAACTTTCGGGTACGCACCGAGTGCGTATC
GGCGATTTTGAAGCGCATAGTGTCGCTGAGGGCGGAGCTATTACAACAAG
GCCACTTTTACTTCTATTCGTCTTCGCTGCTGCTGGTGTACGAGGGCAGC
GTCAGCGCGCACTCGCCCGCCAACGTGGACGTGCGCATGATCGACTTTGC
GCACACCGTGCGCTCGTTTGGGCAGCGCGACGACGGCTACCTCAAGGGCG
TCGAGTACCTCATCGCCATGCTCGGGCGCATTGTGCGCGCCCAACAACAC
AACAACGCCTAA
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protein sequence of Ggra11087.t1

>Ggra11087.t1 ID=Ggra11087.t1|Name=Ggra11087.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=304bp
MEGGSCSQLPCDDAPYPHQVGGHGQLCMTSSGRILKPLLSKEYAFYEYIN
SEQLPHDMRWIRRHTPRFYGHVDVASAAAKKGRPRAGAGAGASGAGLGDG
SDSNGADMRIELEDINRQFAIPCVIDCKIGTRHYDDDASEEKRRRHIEKA
KATTSAKCGIRFTGMQSFKRSSNAFSNKGVFESRDKYHGRALREEDLVPQ
LTWFFHDNFRVRTECVSAILKRIVSLRAELLQQGHFYFYSSSLLLVYEGS
VSAHSPANVDVRMIDFAHTVRSFGQRDDGYLKGVEYLIAMLGRIVRAQQH
NNA*
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mRNA from alignment at tig00000207_pilon:84996..86081-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11087.t1 ID=Ggra11087.t1|Name=Ggra11087.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000207_pilon:84996..86081- (Gracilaria gracilis GNS1m male)
ATGGAAGGCGGCTCGTGCTCTCAACTGCCATGTGACGACGCGCCGTACCC
GCACCAGGTGGGCGGGCACGGGCAGCTGTGCATGACGTCGTCCGGCCGCA
TCCTCAAGCCGCTGCTCAGCAAGGAGTACGCCTTTTACGAGTACATCAAC
AGCGAGCAGTTGCCGCACGACATGCGCTGGATTCGCCGCCACACGCCGCG
CTTCTACGGACATGTGGACGTTGCGTCCGCGGCCGCCAAGAAGGGCCGGC
CGCGCGCCGGCGCCGGCGCGGGCGCCAGCGGCGCGGGCGTGAGCGGCGCG
AGCGGCGCGAGCGGCGCGGGCGCGAGCGGCGCGGCGGCAGCGGCAGCGGC
GGCGGCGGCGGCGGCGAAGCGCAACGGGGCGTCGGCGTTTCGGTGGCGCG
GCGGCGATGGGGTAGTGCATACGGCGCTGTCGCCGTGGGCGGCGCAGATG
CGGATGCGGCAGCTGGGCGACGGCAGCGACTCCAACGGGGCGGACATGCG
CATCGAGCTGGAGGACATCAACAGGCAGTTTGCGATCCCGTGCGTGATCG
ACTGCAAGATTGGCACGCGCCACTACGACGACGACGCGTCGGAGGAGAAG
CGCCGGCGACACATTGAAAAGGCCAAGGCGACGACGTCGGCCAAGTGCGG
CATTCGCTTCACGGGCATGCAGTCGTTCAAGCGCTCGAGCAACGCGTTCA
GCAACAAGGGCGTGTTCGAGAGCCGCGACAAGTACCACGGGCGCGCGCTG
CGCGAGGAGGACCTGGTGCCGCAGCTGACGTGGTTCTTCCACGACAACTT
TCGGGTACGCACCGAGTGCGTATCGGCGATTTTGAAGCGCATAGTGTCGC
TGAGGGCGGAGCTATTACAACAAGGCCACTTTTACTTCTATTCGTCTTCG
CTGCTGCTGGTGTACGAGGGCAGCGTCAGCGCGCACTCGCCCGCCAACGT
GGACGTGCGCATGATCGACTTTGCGCACACCGTGCGCTCGTTTGGGCAGC
GCGACGACGGCTACCTCAAGGGCGTCGAGTACCTCATCGCCATGCTCGGG
CGCATTGTGCGCGCCCAACAACACAACAACGCCTAA
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Coding sequence (CDS) from alignment at tig00000207_pilon:84996..86081-

>Ggra11087.t1 ID=Ggra11087.t1|Name=Ggra11087.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00000207_pilon:84996..86081- (Gracilaria gracilis GNS1m male)
ATGGAAGGCGGCTCGTGCTCTCAACTGCCATGTGACGACGCGCCGTACCC
GCACCAGGTGGGCGGGCACGGGCAGCTGTGCATGACGTCGTCCGGCCGCA
TCCTCAAGCCGCTGCTCAGCAAGGAGTACGCCTTTTACGAGTACATCAAC
AGCGAGCAGTTGCCGCACGACATGCGCTGGATTCGCCGCCACACGCCGCG
CTTCTACGGACATGTGGACGTTGCGTCCGCGGCCGCCAAGAAGGGCCGGC
CGCGCGCCGGCGCCGGCGCGGGCGCCAGCGGCGCGGGCCTGGGCGACGGC
AGCGACTCCAACGGGGCGGACATGCGCATCGAGCTGGAGGACATCAACAG
GCAGTTTGCGATCCCGTGCGTGATCGACTGCAAGATTGGCACGCGCCACT
ACGACGACGACGCGTCGGAGGAGAAGCGCCGGCGACACATTGAAAAGGCC
AAGGCGACGACGTCGGCCAAGTGCGGCATTCGCTTCACGGGCATGCAGTC
GTTCAAGCGCTCGAGCAACGCGTTCAGCAACAAGGGCGTGTTCGAGAGCC
GCGACAAGTACCACGGGCGCGCGCTGCGCGAGGAGGACCTGGTGCCGCAG
CTGACGTGGTTCTTCCACGACAACTTTCGGGTACGCACCGAGTGCGTATC
GGCGATTTTGAAGCGCATAGTGTCGCTGAGGGCGGAGCTATTACAACAAG
GCCACTTTTACTTCTATTCGTCTTCGCTGCTGCTGGTGTACGAGGGCAGC
GTCAGCGCGCACTCGCCCGCCAACGTGGACGTGCGCATGATCGACTTTGC
GCACACCGTGCGCTCGTTTGGGCAGCGCGACGACGGCTACCTCAAGGGCG
TCGAGTACCTCATCGCCATGCTCGGGCGCATTGTGCGCGCCCAACAACAC
AACAACGCCTAA
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