Ggra11086.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11086.t1
Unique NameGgra11086.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length553
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:81719..83377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707365.1
PFAMsJAB,Myb_DNA-binding,SWIRM
Max annot lvl2759|Eukaryota
KEGG koko:K11865
GOsGO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0097159,GO:1901363
Evalue3.98e-09
EggNOG OGsKOG0724@1|root,KOG0724@2759|Eukaryota
Descriptionubiquitin modification-dependent histone binding
COG categoryK
BRITEko00000,ko01002,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11086Ggra11086Gracilaria gracilis GNS1m malegenetig00000207_pilon 81719..83377 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11086.t1.stop1Ggra11086.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 81719..81721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11086.t1.CDS1Ggra11086.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 81719..83377 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11086.t1.exon1Ggra11086.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 81719..83377 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11086.t1.start1Ggra11086.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 83375..83377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11086.t1Ggra11086.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 81719..83377 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11086.t1 ID=Ggra11086.t1|Name=Ggra11086.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=553bp
MLQSSQTEQQLRDARKRIAALERELQLLRSSTPSPPPPPTPPPPSCPSLG
APSPTSRPNRKPIMTRRAAAAAAAAAAVAVVSSSTHNTAVRSAPSSPSTI
AHFSQLSTPNPSEHGSSHSTPLLSCYAPLSPKCLQTFETKSVLCSETNQV
SQCSKRQIGLTSSNHTPTNTTTNTNTTTTTTTTTTTTTTHNKYNNNNNNN
SSNNNNNRASHSSKRNASPPNCDANSLNSKPKAQNVSASSAARSSLPPPR
RRAPALAVVKTTSTKKEKAQVVAKCTEPRAGQTRYWTEHEHERFLEAVGE
YGEKAYVAISNYVETRTPKQVRTHAQKFQMKMARLARQCIEAGQPIQMPA
GMRPVIELAVGNKSTIVTITADQTIKLASKSVTDISNIDPCIVRALSASH
TQYQCEVKRRAALRTAREDELVKRCSECSSSEGEEEQPQPQPQAQAQAQA
QAQPQAQAQAQAQPRGEKTANVADPYLHYIGTATEGKDDMEMERALAVGL
TASEGAKECELMVSDGSSDGGRSCGADEHELEDLRKLDDGDMALASFSDM
EL*
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spliced messenger RNA

>Ggra11086.t1 ID=Ggra11086.t1|Name=Ggra11086.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1659bp|location=Sequence derived from alignment at tig00000207_pilon:81719..83377- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCAGTCATCGCAAACCGAGCAGCAATTGCGAGACGCTCGCAAGCG
CATCGCCGCCCTCGAGCGCGAGTTGCAGCTCTTGCGCTCATCCACTCCAT
CCCCCCCGCCACCGCCGACGCCGCCGCCGCCCTCCTGCCCATCGCTCGGA
GCGCCGTCGCCCACATCGCGCCCCAATCGCAAACCCATCATGACGCGTCG
CGCCGCCGCCGCCGCCGCCGCCGCTGCCGCCGTGGCCGTCGTCTCCTCCT
CCACGCACAACACTGCTGTGCGCTCCGCGCCCTCCTCCCCTTCCACCATT
GCACATTTTTCTCAGCTCTCTACGCCCAATCCCAGCGAGCACGGCTCGTC
GCATAGCACGCCGCTGCTGTCTTGCTACGCGCCCTTGTCGCCCAAGTGCC
TCCAAACTTTTGAAACCAAGTCTGTTCTCTGCTCCGAAACCAATCAAGTT
TCCCAATGCTCCAAGCGCCAAATCGGTCTAACCTCTTCGAACCACACCCC
CACCAATACCACCACAAACACCAACACCACCACCACCACCACCACCACCA
CCACCACCACCACCACACACAACAAATACAACAACAACAACAACAACAAC
AGCAGCAACAACAACAACAATCGAGCGTCGCACAGCAGCAAACGCAACGC
CAGCCCCCCCAATTGCGATGCCAATTCGCTCAACAGCAAGCCCAAGGCGC
AAAACGTGAGCGCTAGCAGCGCAGCGCGCTCCAGTTTACCGCCGCCGCGC
CGCCGCGCACCGGCGCTGGCCGTGGTCAAGACCACGAGCACCAAGAAGGA
AAAGGCGCAAGTGGTGGCCAAGTGCACGGAGCCGCGCGCCGGCCAGACGC
GCTACTGGACCGAGCACGAGCACGAGCGCTTCCTGGAGGCGGTAGGCGAG
TACGGTGAGAAGGCATACGTGGCCATCTCCAACTACGTGGAGACGCGCAC
GCCCAAGCAGGTGCGCACGCACGCGCAGAAATTCCAGATGAAGATGGCGC
GGCTGGCCAGGCAGTGCATCGAGGCGGGGCAGCCCATCCAGATGCCGGCC
GGCATGAGGCCGGTGATCGAGCTGGCCGTGGGCAATAAATCGACGATTGT
GACCATCACGGCGGACCAGACCATCAAGCTGGCTAGCAAGTCGGTGACGG
ACATCTCCAACATCGACCCGTGCATTGTGAGGGCGCTGTCGGCGTCTCAC
ACTCAGTACCAATGTGAGGTGAAGCGACGTGCGGCGCTGCGCACGGCACG
CGAGGACGAGCTGGTGAAGCGCTGCAGCGAATGTAGCAGCAGCGAGGGGG
AGGAGGAACAGCCGCAGCCGCAGCCGCAGGCGCAGGCGCAGGCGCAGGCG
CAGGCGCAGCCGCAGGCGCAGGCGCAGGCGCAGGCGCAGCCGCGCGGTGA
GAAGACGGCGAACGTGGCGGACCCGTATCTACACTACATTGGGACGGCGA
CGGAGGGCAAGGACGACATGGAGATGGAGAGGGCGCTGGCGGTGGGGCTG
ACGGCGAGCGAAGGCGCGAAGGAGTGCGAACTGATGGTGTCGGACGGGTC
GTCGGACGGGGGGCGCAGCTGCGGCGCGGACGAGCACGAGCTGGAGGACC
TGCGCAAGCTGGACGACGGCGACATGGCGCTGGCGTCGTTCTCGGACATG
GAGCTGTGA
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protein sequence of Ggra11086.t1

>Ggra11086.t1 ID=Ggra11086.t1|Name=Ggra11086.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=553bp
MLQSSQTEQQLRDARKRIAALERELQLLRSSTPSPPPPPTPPPPSCPSLG
APSPTSRPNRKPIMTRRAAAAAAAAAAVAVVSSSTHNTAVRSAPSSPSTI
AHFSQLSTPNPSEHGSSHSTPLLSCYAPLSPKCLQTFETKSVLCSETNQV
SQCSKRQIGLTSSNHTPTNTTTNTNTTTTTTTTTTTTTTHNKYNNNNNNN
SSNNNNNRASHSSKRNASPPNCDANSLNSKPKAQNVSASSAARSSLPPPR
RRAPALAVVKTTSTKKEKAQVVAKCTEPRAGQTRYWTEHEHERFLEAVGE
YGEKAYVAISNYVETRTPKQVRTHAQKFQMKMARLARQCIEAGQPIQMPA
GMRPVIELAVGNKSTIVTITADQTIKLASKSVTDISNIDPCIVRALSASH
TQYQCEVKRRAALRTAREDELVKRCSECSSSEGEEEQPQPQPQAQAQAQA
QAQPQAQAQAQAQPRGEKTANVADPYLHYIGTATEGKDDMEMERALAVGL
TASEGAKECELMVSDGSSDGGRSCGADEHELEDLRKLDDGDMALASFSDM
EL*
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mRNA from alignment at tig00000207_pilon:81719..83377-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11086.t1 ID=Ggra11086.t1|Name=Ggra11086.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1659bp|location=Sequence derived from alignment at tig00000207_pilon:81719..83377- (Gracilaria gracilis GNS1m male)
ATGCTTCAGTCATCGCAAACCGAGCAGCAATTGCGAGACGCTCGCAAGCG
CATCGCCGCCCTCGAGCGCGAGTTGCAGCTCTTGCGCTCATCCACTCCAT
CCCCCCCGCCACCGCCGACGCCGCCGCCGCCCTCCTGCCCATCGCTCGGA
GCGCCGTCGCCCACATCGCGCCCCAATCGCAAACCCATCATGACGCGTCG
CGCCGCCGCCGCCGCCGCCGCCGCTGCCGCCGTGGCCGTCGTCTCCTCCT
CCACGCACAACACTGCTGTGCGCTCCGCGCCCTCCTCCCCTTCCACCATT
GCACATTTTTCTCAGCTCTCTACGCCCAATCCCAGCGAGCACGGCTCGTC
GCATAGCACGCCGCTGCTGTCTTGCTACGCGCCCTTGTCGCCCAAGTGCC
TCCAAACTTTTGAAACCAAGTCTGTTCTCTGCTCCGAAACCAATCAAGTT
TCCCAATGCTCCAAGCGCCAAATCGGTCTAACCTCTTCGAACCACACCCC
CACCAATACCACCACAAACACCAACACCACCACCACCACCACCACCACCA
CCACCACCACCACCACACACAACAAATACAACAACAACAACAACAACAAC
AGCAGCAACAACAACAACAATCGAGCGTCGCACAGCAGCAAACGCAACGC
CAGCCCCCCCAATTGCGATGCCAATTCGCTCAACAGCAAGCCCAAGGCGC
AAAACGTGAGCGCTAGCAGCGCAGCGCGCTCCAGTTTACCGCCGCCGCGC
CGCCGCGCACCGGCGCTGGCCGTGGTCAAGACCACGAGCACCAAGAAGGA
AAAGGCGCAAGTGGTGGCCAAGTGCACGGAGCCGCGCGCCGGCCAGACGC
GCTACTGGACCGAGCACGAGCACGAGCGCTTCCTGGAGGCGGTAGGCGAG
TACGGTGAGAAGGCATACGTGGCCATCTCCAACTACGTGGAGACGCGCAC
GCCCAAGCAGGTGCGCACGCACGCGCAGAAATTCCAGATGAAGATGGCGC
GGCTGGCCAGGCAGTGCATCGAGGCGGGGCAGCCCATCCAGATGCCGGCC
GGCATGAGGCCGGTGATCGAGCTGGCCGTGGGCAATAAATCGACGATTGT
GACCATCACGGCGGACCAGACCATCAAGCTGGCTAGCAAGTCGGTGACGG
ACATCTCCAACATCGACCCGTGCATTGTGAGGGCGCTGTCGGCGTCTCAC
ACTCAGTACCAATGTGAGGTGAAGCGACGTGCGGCGCTGCGCACGGCACG
CGAGGACGAGCTGGTGAAGCGCTGCAGCGAATGTAGCAGCAGCGAGGGGG
AGGAGGAACAGCCGCAGCCGCAGCCGCAGGCGCAGGCGCAGGCGCAGGCG
CAGGCGCAGCCGCAGGCGCAGGCGCAGGCGCAGGCGCAGCCGCGCGGTGA
GAAGACGGCGAACGTGGCGGACCCGTATCTACACTACATTGGGACGGCGA
CGGAGGGCAAGGACGACATGGAGATGGAGAGGGCGCTGGCGGTGGGGCTG
ACGGCGAGCGAAGGCGCGAAGGAGTGCGAACTGATGGTGTCGGACGGGTC
GTCGGACGGGGGGCGCAGCTGCGGCGCGGACGAGCACGAGCTGGAGGACC
TGCGCAAGCTGGACGACGGCGACATGGCGCTGGCGTCGTTCTCGGACATG
GAGCTGTGA
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Coding sequence (CDS) from alignment at tig00000207_pilon:81719..83377-

>Ggra11086.t1 ID=Ggra11086.t1|Name=Ggra11086.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1659bp|location=Sequence derived from alignment at tig00000207_pilon:81719..83377- (Gracilaria gracilis GNS1m male)
ATGCTTCAGTCATCGCAAACCGAGCAGCAATTGCGAGACGCTCGCAAGCG
CATCGCCGCCCTCGAGCGCGAGTTGCAGCTCTTGCGCTCATCCACTCCAT
CCCCCCCGCCACCGCCGACGCCGCCGCCGCCCTCCTGCCCATCGCTCGGA
GCGCCGTCGCCCACATCGCGCCCCAATCGCAAACCCATCATGACGCGTCG
CGCCGCCGCCGCCGCCGCCGCCGCTGCCGCCGTGGCCGTCGTCTCCTCCT
CCACGCACAACACTGCTGTGCGCTCCGCGCCCTCCTCCCCTTCCACCATT
GCACATTTTTCTCAGCTCTCTACGCCCAATCCCAGCGAGCACGGCTCGTC
GCATAGCACGCCGCTGCTGTCTTGCTACGCGCCCTTGTCGCCCAAGTGCC
TCCAAACTTTTGAAACCAAGTCTGTTCTCTGCTCCGAAACCAATCAAGTT
TCCCAATGCTCCAAGCGCCAAATCGGTCTAACCTCTTCGAACCACACCCC
CACCAATACCACCACAAACACCAACACCACCACCACCACCACCACCACCA
CCACCACCACCACCACACACAACAAATACAACAACAACAACAACAACAAC
AGCAGCAACAACAACAACAATCGAGCGTCGCACAGCAGCAAACGCAACGC
CAGCCCCCCCAATTGCGATGCCAATTCGCTCAACAGCAAGCCCAAGGCGC
AAAACGTGAGCGCTAGCAGCGCAGCGCGCTCCAGTTTACCGCCGCCGCGC
CGCCGCGCACCGGCGCTGGCCGTGGTCAAGACCACGAGCACCAAGAAGGA
AAAGGCGCAAGTGGTGGCCAAGTGCACGGAGCCGCGCGCCGGCCAGACGC
GCTACTGGACCGAGCACGAGCACGAGCGCTTCCTGGAGGCGGTAGGCGAG
TACGGTGAGAAGGCATACGTGGCCATCTCCAACTACGTGGAGACGCGCAC
GCCCAAGCAGGTGCGCACGCACGCGCAGAAATTCCAGATGAAGATGGCGC
GGCTGGCCAGGCAGTGCATCGAGGCGGGGCAGCCCATCCAGATGCCGGCC
GGCATGAGGCCGGTGATCGAGCTGGCCGTGGGCAATAAATCGACGATTGT
GACCATCACGGCGGACCAGACCATCAAGCTGGCTAGCAAGTCGGTGACGG
ACATCTCCAACATCGACCCGTGCATTGTGAGGGCGCTGTCGGCGTCTCAC
ACTCAGTACCAATGTGAGGTGAAGCGACGTGCGGCGCTGCGCACGGCACG
CGAGGACGAGCTGGTGAAGCGCTGCAGCGAATGTAGCAGCAGCGAGGGGG
AGGAGGAACAGCCGCAGCCGCAGCCGCAGGCGCAGGCGCAGGCGCAGGCG
CAGGCGCAGCCGCAGGCGCAGGCGCAGGCGCAGGCGCAGCCGCGCGGTGA
GAAGACGGCGAACGTGGCGGACCCGTATCTACACTACATTGGGACGGCGA
CGGAGGGCAAGGACGACATGGAGATGGAGAGGGCGCTGGCGGTGGGGCTG
ACGGCGAGCGAAGGCGCGAAGGAGTGCGAACTGATGGTGTCGGACGGGTC
GTCGGACGGGGGGCGCAGCTGCGGCGCGGACGAGCACGAGCTGGAGGACC
TGCGCAAGCTGGACGACGGCGACATGGCGCTGGCGTCGTTCTCGGACATG
GAGCTGTGA
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