Ggra11083.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11083.t1
Unique NameGgra11083.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:77468..78610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S22_59V6.1
PFAMsBrix
Max annot lvl35493|Streptophyta
KEGG koko:K14859
GOsGO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043933,GO:0044085,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1990904
Evalue1.42e-73
EggNOG OGsKOG2963@1|root,KOG2963@2759|Eukaryota,37R2S@33090|Viridiplantae,3GDS2@35493|Streptophyta
DescriptionPeter Pan-like protein
COG categoryJ
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11083Ggra11083Gracilaria gracilis GNS1m malegenetig00000207_pilon 77468..78610 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11083.t1.start1Ggra11083.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 77468..77470 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11083.t1.CDS1Ggra11083.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 77468..78610 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11083.t1.exon1Ggra11083.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 77468..78610 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11083.t1.stop1Ggra11083.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 78608..78610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11083.t1Ggra11083.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 77468..78610 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11083.t1 ID=Ggra11083.t1|Name=Ggra11083.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=381bp
MPRKAGGKRRKKRTHKQPTDASDSIPRSFVFRRGHVPLGIRDLIPGLRSA
LMPHTARRLKERRFNNIRDYVSVATQIGVSHFWILSATATAPYLRIAKVP
QGPTLTFRVVQYSLSADVRATQRRPLALEHSHFEQPPLLVLNNFNQPAST
ELKLMAETFRHSFPSIDVGNARLASLKRVLLIQRDVQSGHVYMRHYALKV
QHAGLSKPVRKMVNKRRIPKMSNLTDVSELMDGAPGVFSSDSEAEENGDE
TVQLAQQVHKMRKGSNSKIKLVEVGPRLTLQLVKIQSGLCEGAVLYHRFV
SKTKEEARADEQRIQGRKQMKRKRREEQEVNVKRKQEKKRAKKERHKKSV
QALQEARAGGDDALNDGNEADDEGNDSGDV*
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spliced messenger RNA

>Ggra11083.t1 ID=Ggra11083.t1|Name=Ggra11083.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000207_pilon:77468..78610+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAGAAAGGCGGGCGGAAAGCGGCGGAAGAAGCGCACACACAAGCA
GCCCACCGATGCGTCCGACTCCATTCCGCGCAGCTTTGTGTTCCGACGCG
GGCATGTGCCGCTCGGCATCCGCGACTTGATTCCGGGCCTGCGCTCCGCG
CTCATGCCGCACACGGCCCGCCGCCTCAAGGAGCGGCGCTTCAACAACAT
CCGCGACTACGTGTCCGTGGCGACGCAGATTGGCGTGTCGCACTTTTGGA
TTCTGTCTGCCACGGCCACCGCGCCGTACCTGCGCATCGCAAAAGTGCCA
CAGGGACCGACGCTGACGTTTCGCGTCGTACAGTATTCGCTTTCTGCCGA
CGTGCGCGCCACGCAACGCAGGCCCCTTGCGCTGGAGCACTCGCACTTTG
AACAGCCGCCGCTGCTGGTTTTGAACAATTTCAACCAGCCAGCCAGCACC
GAGCTCAAGCTCATGGCGGAGACGTTTCGCCACTCGTTCCCGAGCATCGA
CGTGGGGAACGCGCGACTGGCGTCGTTGAAGCGCGTGCTGCTCATACAGC
GCGATGTGCAAAGCGGCCATGTGTACATGCGCCATTACGCGCTCAAGGTG
CAGCACGCGGGGCTGTCGAAACCGGTGCGCAAGATGGTGAACAAGCGGCG
AATTCCGAAAATGAGCAACCTCACCGACGTGTCCGAACTGATGGACGGCG
CGCCGGGCGTGTTCAGCTCCGACTCGGAAGCGGAGGAGAACGGCGATGAG
ACGGTGCAACTGGCACAGCAGGTGCACAAGATGAGGAAGGGCAGCAACAG
CAAGATAAAGTTGGTGGAAGTGGGGCCGCGTTTGACGCTGCAGCTGGTGA
AGATTCAAAGCGGTCTGTGCGAGGGCGCTGTGTTGTACCATCGCTTTGTG
AGCAAGACCAAGGAAGAGGCGCGCGCAGACGAACAGCGAATACAAGGCAG
GAAGCAGATGAAACGAAAGCGACGTGAAGAGCAAGAGGTAAACGTGAAAC
GCAAACAGGAGAAGAAGCGAGCCAAGAAGGAGCGACATAAAAAGAGTGTA
CAGGCGCTGCAAGAGGCTCGGGCAGGCGGCGACGATGCACTTAACGACGG
CAATGAAGCGGACGATGAGGGCAACGACAGTGGGGATGTTTAG
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protein sequence of Ggra11083.t1

>Ggra11083.t1 ID=Ggra11083.t1|Name=Ggra11083.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=381bp
MPRKAGGKRRKKRTHKQPTDASDSIPRSFVFRRGHVPLGIRDLIPGLRSA
LMPHTARRLKERRFNNIRDYVSVATQIGVSHFWILSATATAPYLRIAKVP
QGPTLTFRVVQYSLSADVRATQRRPLALEHSHFEQPPLLVLNNFNQPAST
ELKLMAETFRHSFPSIDVGNARLASLKRVLLIQRDVQSGHVYMRHYALKV
QHAGLSKPVRKMVNKRRIPKMSNLTDVSELMDGAPGVFSSDSEAEENGDE
TVQLAQQVHKMRKGSNSKIKLVEVGPRLTLQLVKIQSGLCEGAVLYHRFV
SKTKEEARADEQRIQGRKQMKRKRREEQEVNVKRKQEKKRAKKERHKKSV
QALQEARAGGDDALNDGNEADDEGNDSGDV*
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mRNA from alignment at tig00000207_pilon:77468..78610+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11083.t1 ID=Ggra11083.t1|Name=Ggra11083.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000207_pilon:77468..78610+ (Gracilaria gracilis GNS1m male)
ATGCCGAGAAAGGCGGGCGGAAAGCGGCGGAAGAAGCGCACACACAAGCA
GCCCACCGATGCGTCCGACTCCATTCCGCGCAGCTTTGTGTTCCGACGCG
GGCATGTGCCGCTCGGCATCCGCGACTTGATTCCGGGCCTGCGCTCCGCG
CTCATGCCGCACACGGCCCGCCGCCTCAAGGAGCGGCGCTTCAACAACAT
CCGCGACTACGTGTCCGTGGCGACGCAGATTGGCGTGTCGCACTTTTGGA
TTCTGTCTGCCACGGCCACCGCGCCGTACCTGCGCATCGCAAAAGTGCCA
CAGGGACCGACGCTGACGTTTCGCGTCGTACAGTATTCGCTTTCTGCCGA
CGTGCGCGCCACGCAACGCAGGCCCCTTGCGCTGGAGCACTCGCACTTTG
AACAGCCGCCGCTGCTGGTTTTGAACAATTTCAACCAGCCAGCCAGCACC
GAGCTCAAGCTCATGGCGGAGACGTTTCGCCACTCGTTCCCGAGCATCGA
CGTGGGGAACGCGCGACTGGCGTCGTTGAAGCGCGTGCTGCTCATACAGC
GCGATGTGCAAAGCGGCCATGTGTACATGCGCCATTACGCGCTCAAGGTG
CAGCACGCGGGGCTGTCGAAACCGGTGCGCAAGATGGTGAACAAGCGGCG
AATTCCGAAAATGAGCAACCTCACCGACGTGTCCGAACTGATGGACGGCG
CGCCGGGCGTGTTCAGCTCCGACTCGGAAGCGGAGGAGAACGGCGATGAG
ACGGTGCAACTGGCACAGCAGGTGCACAAGATGAGGAAGGGCAGCAACAG
CAAGATAAAGTTGGTGGAAGTGGGGCCGCGTTTGACGCTGCAGCTGGTGA
AGATTCAAAGCGGTCTGTGCGAGGGCGCTGTGTTGTACCATCGCTTTGTG
AGCAAGACCAAGGAAGAGGCGCGCGCAGACGAACAGCGAATACAAGGCAG
GAAGCAGATGAAACGAAAGCGACGTGAAGAGCAAGAGGTAAACGTGAAAC
GCAAACAGGAGAAGAAGCGAGCCAAGAAGGAGCGACATAAAAAGAGTGTA
CAGGCGCTGCAAGAGGCTCGGGCAGGCGGCGACGATGCACTTAACGACGG
CAATGAAGCGGACGATGAGGGCAACGACAGTGGGGATGTTTAG
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Coding sequence (CDS) from alignment at tig00000207_pilon:77468..78610+

>Ggra11083.t1 ID=Ggra11083.t1|Name=Ggra11083.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1143bp|location=Sequence derived from alignment at tig00000207_pilon:77468..78610+ (Gracilaria gracilis GNS1m male)
ATGCCGAGAAAGGCGGGCGGAAAGCGGCGGAAGAAGCGCACACACAAGCA
GCCCACCGATGCGTCCGACTCCATTCCGCGCAGCTTTGTGTTCCGACGCG
GGCATGTGCCGCTCGGCATCCGCGACTTGATTCCGGGCCTGCGCTCCGCG
CTCATGCCGCACACGGCCCGCCGCCTCAAGGAGCGGCGCTTCAACAACAT
CCGCGACTACGTGTCCGTGGCGACGCAGATTGGCGTGTCGCACTTTTGGA
TTCTGTCTGCCACGGCCACCGCGCCGTACCTGCGCATCGCAAAAGTGCCA
CAGGGACCGACGCTGACGTTTCGCGTCGTACAGTATTCGCTTTCTGCCGA
CGTGCGCGCCACGCAACGCAGGCCCCTTGCGCTGGAGCACTCGCACTTTG
AACAGCCGCCGCTGCTGGTTTTGAACAATTTCAACCAGCCAGCCAGCACC
GAGCTCAAGCTCATGGCGGAGACGTTTCGCCACTCGTTCCCGAGCATCGA
CGTGGGGAACGCGCGACTGGCGTCGTTGAAGCGCGTGCTGCTCATACAGC
GCGATGTGCAAAGCGGCCATGTGTACATGCGCCATTACGCGCTCAAGGTG
CAGCACGCGGGGCTGTCGAAACCGGTGCGCAAGATGGTGAACAAGCGGCG
AATTCCGAAAATGAGCAACCTCACCGACGTGTCCGAACTGATGGACGGCG
CGCCGGGCGTGTTCAGCTCCGACTCGGAAGCGGAGGAGAACGGCGATGAG
ACGGTGCAACTGGCACAGCAGGTGCACAAGATGAGGAAGGGCAGCAACAG
CAAGATAAAGTTGGTGGAAGTGGGGCCGCGTTTGACGCTGCAGCTGGTGA
AGATTCAAAGCGGTCTGTGCGAGGGCGCTGTGTTGTACCATCGCTTTGTG
AGCAAGACCAAGGAAGAGGCGCGCGCAGACGAACAGCGAATACAAGGCAG
GAAGCAGATGAAACGAAAGCGACGTGAAGAGCAAGAGGTAAACGTGAAAC
GCAAACAGGAGAAGAAGCGAGCCAAGAAGGAGCGACATAAAAAGAGTGTA
CAGGCGCTGCAAGAGGCTCGGGCAGGCGGCGACGATGCACTTAACGACGG
CAATGAAGCGGACGATGAGGGCAACGACAGTGGGGATGTTTAG
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