Ggra11082.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11082.t1
Unique NameGgra11082.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:76456..77078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703144.1
PFAMsArf
Max annot lvl2759|Eukaryota
KEGG koko:K07937,ko:K07977
KEGG Pathwayko04072,ko04144,ko05110,ko05134,map04072,map04144,map05110,map05134
Evalue5.23e-100
EggNOG OGsCOG1100@1|root,KOG0070@2759|Eukaryota
DescriptionGTP binding
COG categoryBDLTU
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11082Ggra11082Gracilaria gracilis GNS1m malegenetig00000207_pilon 76456..77078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11082.t1Ggra11082.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 76456..77078 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11082.t1.stop1Ggra11082.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 76456..76458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11082.t1.CDS1Ggra11082.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 76456..76932 -
Ggra11082.t1.CDS2Ggra11082.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000207_pilon 77016..77078 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11082.t1.exon1Ggra11082.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 76456..76932 -
Ggra11082.t1.exon2Ggra11082.t1.exon2Gracilaria gracilis GNS1m maleexontig00000207_pilon 77016..77078 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11082.t1.intron1Ggra11082.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000207_pilon 76933..77015 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11082.t1.start1Ggra11082.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 77076..77078 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11082.t1 ID=Ggra11082.t1|Name=Ggra11082.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=180bp
MGNIMSLFASFLGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF
NVESVTYKNIDFTVWDVGGQDKIRPLWRHYFQNTHGVIFVVDSNDRARFP
EAREELNKMMMEDELRNAVLLVFANKQDLPNAANTADIVNALGLPEQRSH
PWYIMSCCATTGAGLYEGLDWLAEKLKDV*
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spliced messenger RNA

>Ggra11082.t1 ID=Ggra11082.t1|Name=Ggra11082.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000207_pilon:76456..77078- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAACATTATGTCCCTCTTTGCCAGCTTTCTTGGTAAGAAAGAAAT
GCGTATCCTTATGGTTGGTTTGGATGCCGCTGGAAAGACAACAATCCTTT
ACAAACTCAAGCTCGGTGAAATCGTAACAACCATTCCAACAATCGGTTTC
AATGTAGAATCAGTCACTTACAAGAACATTGATTTCACCGTATGGGACGT
CGGTGGGCAGGACAAGATTCGACCCTTGTGGAGACACTACTTTCAAAACA
CGCATGGCGTAATATTTGTAGTCGATAGCAACGATCGTGCAAGATTCCCC
GAAGCTCGCGAAGAGTTAAACAAGATGATGATGGAAGACGAACTCCGAAA
CGCTGTGCTTCTCGTCTTTGCCAACAAACAAGACCTGCCGAACGCAGCAA
ACACGGCCGATATTGTCAACGCGCTCGGACTTCCTGAGCAGCGCAGTCAT
CCTTGGTATATCATGTCTTGCTGTGCGACCACTGGTGCTGGCTTATATGA
GGGTCTCGACTGGCTGGCTGAGAAGCTCAAAGATGTCTGA
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protein sequence of Ggra11082.t1

>Ggra11082.t1 ID=Ggra11082.t1|Name=Ggra11082.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=180bp
MGNIMSLFASFLGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF
NVESVTYKNIDFTVWDVGGQDKIRPLWRHYFQNTHGVIFVVDSNDRARFP
EAREELNKMMMEDELRNAVLLVFANKQDLPNAANTADIVNALGLPEQRSH
PWYIMSCCATTGAGLYEGLDWLAEKLKDV*
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mRNA from alignment at tig00000207_pilon:76456..77078-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11082.t1 ID=Ggra11082.t1|Name=Ggra11082.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=623bp|location=Sequence derived from alignment at tig00000207_pilon:76456..77078- (Gracilaria gracilis GNS1m male)
ATGGGTAACATTATGTCCCTCTTTGCCAGCTTTCTTGGTAAGAAAGAAAT
GCGTATCCTTATGGTACGTCCGTTCTGTTTTCTTCCGTTCGTTTGCCACT
CATCTCACTCACCGCTTGTGCCCTGTTCCACGAAACAAAACTGCAGGTTG
GTTTGGATGCCGCTGGAAAGACAACAATCCTTTACAAACTCAAGCTCGGT
GAAATCGTAACAACCATTCCAACAATCGGTTTCAATGTAGAATCAGTCAC
TTACAAGAACATTGATTTCACCGTATGGGACGTCGGTGGGCAGGACAAGA
TTCGACCCTTGTGGAGACACTACTTTCAAAACACGCATGGCGTAATATTT
GTAGTCGATAGCAACGATCGTGCAAGATTCCCCGAAGCTCGCGAAGAGTT
AAACAAGATGATGATGGAAGACGAACTCCGAAACGCTGTGCTTCTCGTCT
TTGCCAACAAACAAGACCTGCCGAACGCAGCAAACACGGCCGATATTGTC
AACGCGCTCGGACTTCCTGAGCAGCGCAGTCATCCTTGGTATATCATGTC
TTGCTGTGCGACCACTGGTGCTGGCTTATATGAGGGTCTCGACTGGCTGG
CTGAGAAGCTCAAAGATGTCTGA
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Coding sequence (CDS) from alignment at tig00000207_pilon:76456..77078-

>Ggra11082.t1 ID=Ggra11082.t1|Name=Ggra11082.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=540bp|location=Sequence derived from alignment at tig00000207_pilon:76456..77078- (Gracilaria gracilis GNS1m male)
ATGGGTAACATTATGTCCCTCTTTGCCAGCTTTCTTGGTAAGAAAGAAAT
GCGTATCCTTATGGTTGGTTTGGATGCCGCTGGAAAGACAACAATCCTTT
ACAAACTCAAGCTCGGTGAAATCGTAACAACCATTCCAACAATCGGTTTC
AATGTAGAATCAGTCACTTACAAGAACATTGATTTCACCGTATGGGACGT
CGGTGGGCAGGACAAGATTCGACCCTTGTGGAGACACTACTTTCAAAACA
CGCATGGCGTAATATTTGTAGTCGATAGCAACGATCGTGCAAGATTCCCC
GAAGCTCGCGAAGAGTTAAACAAGATGATGATGGAAGACGAACTCCGAAA
CGCTGTGCTTCTCGTCTTTGCCAACAAACAAGACCTGCCGAACGCAGCAA
ACACGGCCGATATTGTCAACGCGCTCGGACTTCCTGAGCAGCGCAGTCAT
CCTTGGTATATCATGTCTTGCTGTGCGACCACTGGTGCTGGCTTATATGA
GGGTCTCGACTGGCTGGCTGAGAAGCTCAAAGATGTCTGA
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