Ggra11080.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11080.t1
Unique NameGgra11080.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length349
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:64749..65795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38654.XP_006017592.1
Preferred nameYJEFN3
PFAMsGRIM-19,YjeF_N
Max annot lvl33208|Metazoa
KEGG koko:K11353
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Evalue1.28e-31
EggNOG OGsCOG0062@1|root,KOG2585@2759|Eukaryota,38EZB@33154|Opisthokonta,3BAVF@33208|Metazoa,3CXYY@33213|Bilateria,4891H@7711|Chordata,48ZDM@7742|Vertebrata
DescriptionyjeF N-terminal
COG categoryG
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11080Ggra11080Gracilaria gracilis GNS1m malegenetig00000207_pilon 64749..65795 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11080.t1.stop1Ggra11080.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 64749..64751 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11080.t1.CDS1Ggra11080.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 64749..65795 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11080.t1.exon1Ggra11080.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 64749..65795 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11080.t1.start1Ggra11080.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 65793..65795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11080.t1Ggra11080.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 64749..65795 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11080.t1 ID=Ggra11080.t1|Name=Ggra11080.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=349bp
MWYRQPIHAAFVSAHHLSGRRKNLECFRRGPNVRKRRLSFHTANQSRPAV
THMALDPPQDRSKSDDMKRKDIQSYITAEIAIQAQVDAFSMAGHDVLAVA
DMCAVGFVEAFMQCYNADDIHSVFIVCGSGFNGLVGVKSAIKLKEHGYDP
AVHFSHPSKYVDIPSVCSKHDIPLYEFVPSTLEYYFQVIVDAMLGVGFDG
GDIHPPYWQVFEMLVSTRRPVASIDVPSGWDLSTGPRPIDRAADTFIKPE
LLVSLGAPKLCSKIFSGGYHFIAGRHLPQQYFADIDVSVPSFPGKSHSVL
FSSAPIQNWGNGEEYGKPGMFNATLFNNNPRRKWVDIDDEMDLWDELD*
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spliced messenger RNA

>Ggra11080.t1 ID=Ggra11080.t1|Name=Ggra11080.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00000207_pilon:64749..65795- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGTACCGACAACCGATACATGCGGCGTTTGTGAGCGCTCATCATCT
TTCTGGTCGACGGAAAAACTTGGAATGCTTCAGACGTGGTCCCAATGTAC
GAAAGCGAAGACTATCTTTTCATACTGCCAATCAGTCAAGGCCTGCCGTT
ACTCACATGGCACTGGATCCTCCTCAAGACAGATCTAAATCGGATGACAT
GAAGCGAAAAGACATCCAATCATACATTACCGCAGAGATAGCTATTCAGG
CGCAAGTAGATGCATTTTCTATGGCTGGACATGACGTCTTGGCTGTGGCT
GACATGTGTGCCGTTGGTTTCGTTGAAGCATTTATGCAATGTTACAATGC
GGACGACATTCATTCAGTTTTCATTGTCTGTGGTTCTGGTTTTAATGGGC
TTGTCGGTGTCAAATCTGCGATAAAGCTGAAGGAGCATGGTTACGATCCT
GCGGTTCACTTCAGTCATCCGTCAAAATATGTCGATATCCCGTCTGTTTG
CAGCAAACATGACATTCCCTTGTATGAGTTCGTTCCATCAACTCTTGAAT
ACTACTTCCAAGTTATCGTGGATGCAATGCTTGGGGTTGGCTTTGATGGC
GGAGATATCCACCCTCCATATTGGCAAGTGTTTGAAATGTTGGTGTCCAC
ACGAAGGCCAGTTGCAAGCATAGATGTTCCTTCCGGCTGGGATCTTAGCA
CAGGGCCGCGCCCAATTGACCGTGCGGCTGATACGTTCATCAAACCTGAG
CTCCTGGTTTCCCTTGGGGCCCCGAAGTTATGCTCGAAGATTTTTTCCGG
AGGATATCATTTCATAGCTGGCCGTCACCTTCCTCAACAATACTTTGCAG
ACATTGATGTTTCCGTACCCTCATTTCCGGGTAAATCACATTCAGTATTG
TTCTCCAGTGCCCCAATTCAGAATTGGGGGAATGGGGAAGAGTATGGGAA
GCCTGGAATGTTCAATGCTACATTATTCAACAACAACCCTCGGCGGAAGT
GGGTAGACATTGATGACGAGATGGATCTCTGGGATGAATTAGATTAG
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protein sequence of Ggra11080.t1

>Ggra11080.t1 ID=Ggra11080.t1|Name=Ggra11080.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=349bp
MWYRQPIHAAFVSAHHLSGRRKNLECFRRGPNVRKRRLSFHTANQSRPAV
THMALDPPQDRSKSDDMKRKDIQSYITAEIAIQAQVDAFSMAGHDVLAVA
DMCAVGFVEAFMQCYNADDIHSVFIVCGSGFNGLVGVKSAIKLKEHGYDP
AVHFSHPSKYVDIPSVCSKHDIPLYEFVPSTLEYYFQVIVDAMLGVGFDG
GDIHPPYWQVFEMLVSTRRPVASIDVPSGWDLSTGPRPIDRAADTFIKPE
LLVSLGAPKLCSKIFSGGYHFIAGRHLPQQYFADIDVSVPSFPGKSHSVL
FSSAPIQNWGNGEEYGKPGMFNATLFNNNPRRKWVDIDDEMDLWDELD*
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mRNA from alignment at tig00000207_pilon:64749..65795-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11080.t1 ID=Ggra11080.t1|Name=Ggra11080.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00000207_pilon:64749..65795- (Gracilaria gracilis GNS1m male)
ATGTGGTACCGACAACCGATACATGCGGCGTTTGTGAGCGCTCATCATCT
TTCTGGTCGACGGAAAAACTTGGAATGCTTCAGACGTGGTCCCAATGTAC
GAAAGCGAAGACTATCTTTTCATACTGCCAATCAGTCAAGGCCTGCCGTT
ACTCACATGGCACTGGATCCTCCTCAAGACAGATCTAAATCGGATGACAT
GAAGCGAAAAGACATCCAATCATACATTACCGCAGAGATAGCTATTCAGG
CGCAAGTAGATGCATTTTCTATGGCTGGACATGACGTCTTGGCTGTGGCT
GACATGTGTGCCGTTGGTTTCGTTGAAGCATTTATGCAATGTTACAATGC
GGACGACATTCATTCAGTTTTCATTGTCTGTGGTTCTGGTTTTAATGGGC
TTGTCGGTGTCAAATCTGCGATAAAGCTGAAGGAGCATGGTTACGATCCT
GCGGTTCACTTCAGTCATCCGTCAAAATATGTCGATATCCCGTCTGTTTG
CAGCAAACATGACATTCCCTTGTATGAGTTCGTTCCATCAACTCTTGAAT
ACTACTTCCAAGTTATCGTGGATGCAATGCTTGGGGTTGGCTTTGATGGC
GGAGATATCCACCCTCCATATTGGCAAGTGTTTGAAATGTTGGTGTCCAC
ACGAAGGCCAGTTGCAAGCATAGATGTTCCTTCCGGCTGGGATCTTAGCA
CAGGGCCGCGCCCAATTGACCGTGCGGCTGATACGTTCATCAAACCTGAG
CTCCTGGTTTCCCTTGGGGCCCCGAAGTTATGCTCGAAGATTTTTTCCGG
AGGATATCATTTCATAGCTGGCCGTCACCTTCCTCAACAATACTTTGCAG
ACATTGATGTTTCCGTACCCTCATTTCCGGGTAAATCACATTCAGTATTG
TTCTCCAGTGCCCCAATTCAGAATTGGGGGAATGGGGAAGAGTATGGGAA
GCCTGGAATGTTCAATGCTACATTATTCAACAACAACCCTCGGCGGAAGT
GGGTAGACATTGATGACGAGATGGATCTCTGGGATGAATTAGATTAG
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Coding sequence (CDS) from alignment at tig00000207_pilon:64749..65795-

>Ggra11080.t1 ID=Ggra11080.t1|Name=Ggra11080.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1047bp|location=Sequence derived from alignment at tig00000207_pilon:64749..65795- (Gracilaria gracilis GNS1m male)
ATGTGGTACCGACAACCGATACATGCGGCGTTTGTGAGCGCTCATCATCT
TTCTGGTCGACGGAAAAACTTGGAATGCTTCAGACGTGGTCCCAATGTAC
GAAAGCGAAGACTATCTTTTCATACTGCCAATCAGTCAAGGCCTGCCGTT
ACTCACATGGCACTGGATCCTCCTCAAGACAGATCTAAATCGGATGACAT
GAAGCGAAAAGACATCCAATCATACATTACCGCAGAGATAGCTATTCAGG
CGCAAGTAGATGCATTTTCTATGGCTGGACATGACGTCTTGGCTGTGGCT
GACATGTGTGCCGTTGGTTTCGTTGAAGCATTTATGCAATGTTACAATGC
GGACGACATTCATTCAGTTTTCATTGTCTGTGGTTCTGGTTTTAATGGGC
TTGTCGGTGTCAAATCTGCGATAAAGCTGAAGGAGCATGGTTACGATCCT
GCGGTTCACTTCAGTCATCCGTCAAAATATGTCGATATCCCGTCTGTTTG
CAGCAAACATGACATTCCCTTGTATGAGTTCGTTCCATCAACTCTTGAAT
ACTACTTCCAAGTTATCGTGGATGCAATGCTTGGGGTTGGCTTTGATGGC
GGAGATATCCACCCTCCATATTGGCAAGTGTTTGAAATGTTGGTGTCCAC
ACGAAGGCCAGTTGCAAGCATAGATGTTCCTTCCGGCTGGGATCTTAGCA
CAGGGCCGCGCCCAATTGACCGTGCGGCTGATACGTTCATCAAACCTGAG
CTCCTGGTTTCCCTTGGGGCCCCGAAGTTATGCTCGAAGATTTTTTCCGG
AGGATATCATTTCATAGCTGGCCGTCACCTTCCTCAACAATACTTTGCAG
ACATTGATGTTTCCGTACCCTCATTTCCGGGTAAATCACATTCAGTATTG
TTCTCCAGTGCCCCAATTCAGAATTGGGGGAATGGGGAAGAGTATGGGAA
GCCTGGAATGTTCAATGCTACATTATTCAACAACAACCCTCGGCGGAAGT
GGGTAGACATTGATGACGAGATGGATCTCTGGGATGAATTAGATTAG
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