Ggra1108.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1108.t1
Unique Name	Ggra1108.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	494

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000945_pilon	contig	tig00000945_pilon:67628..69109 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1108	Ggra1108	Gracilaria gracilis GNS1m male	gene	tig00000945_pilon 67628..69109 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1108.t1.start1	Ggra1108.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000945_pilon 67628..67630 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1108.t1.CDS1	Ggra1108.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000945_pilon 67628..69109 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1108.t1.exon1	Ggra1108.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000945_pilon 67628..69109 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1108.t1.stop1	Ggra1108.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000945_pilon 69107..69109 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1108.t1	Ggra1108.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000945_pilon 67628..69109 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000945_pilon:67628..69109+
coding sequence from alignment at tig00000945_pilon:67628..69109+

mRNA sequence

>Ggra1108.t1 ID=Ggra1108.t1|Name=Ggra1108.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=494bp
MLRRLQPLRRRWPWPSSSSSPLPRRAVASSAAAAAAAAPPTPRAWRGLSR
ARLQRMRRKSASAPPPRCAASLQRAVLDSLLQSALQQPPPHAAPQAVRLL
HAAARRPGSSSSNSNSGGGGGRVVRPSAALVGRLVAAVAQHAAHSAAVAP
LTAGGADAAVEAALRVAALLRARVDAELLLQVVRAAELDARLRTRVMRVW
SVWRAIRSLQLAPTPRLAFESFRVCARALDVQSAAVFMHFAFLNGMYSDD
QQQRQQQQQQQQQQQQQQQQWLPSRRLYYNHLMHAACVSEHYSLLNVAHA
EMRRCRIAPDALTDDILLTAALDQRHHTQAQLLLHALDDRARALAPCALA
ALMRDAARRRQPDAVAALHAQYVRHLPADQRELPAVLSPLAVRQRVPSAA
AAAAAAAAEQPPSESDAALARADPTLAAFHAFRACGAAPHALRLLRLMTD
TFALRPSHLVYSLVVDTCWKAGDMLEAERLKATMLDAASADGA*

spliced messenger RNA

>Ggra1108.t1 ID=Ggra1108.t1|Name=Ggra1108.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000945_pilon:67628..69109+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGCCGGCTGCAGCCGCTGCGTCGCCGCTGGCCATGGCCGTCGTC
GTCGTCGTCGCCGTTGCCGCGTCGCGCCGTCGCGTCCTCCGCTGCTGCCG
CTGCCGCCGCGGCGCCGCCGACGCCGCGCGCGTGGCGCGGGCTATCGCGC
GCGCGGCTGCAGCGTATGCGGCGTAAGTCGGCGTCCGCGCCGCCGCCGCG
CTGCGCGGCCTCGCTACAGCGCGCCGTGCTAGACAGTCTGCTGCAGTCGG
CGCTGCAGCAGCCGCCGCCGCACGCGGCGCCGCAAGCGGTACGTCTGCTA
CACGCGGCGGCGCGCCGCCCCGGCAGCAGCAGCAGCAACAGCAACAGCGG
CGGTGGCGGCGGGCGGGTGGTGCGGCCGTCTGCGGCGCTGGTGGGGCGAC
TGGTGGCGGCCGTGGCGCAGCACGCGGCGCACAGCGCCGCCGTGGCGCCG
CTCACGGCCGGCGGCGCCGACGCGGCTGTGGAGGCTGCGCTGCGCGTGGC
GGCGCTGCTGCGCGCGCGCGTGGACGCCGAGCTGCTGCTGCAGGTGGTGC
GCGCCGCCGAGCTGGACGCGCGGCTGCGCACGCGCGTCATGCGCGTGTGG
TCCGTGTGGCGCGCGATCAGGTCGTTGCAGCTGGCGCCCACGCCGCGCCT
GGCGTTTGAGAGCTTCCGCGTGTGTGCGCGCGCGCTCGACGTGCAGTCGG
CTGCCGTCTTCATGCACTTTGCCTTTCTCAATGGCATGTACAGCGACGAC
caacaacaacgacaacaacaacaacaacaacaacaacaacaacaacaaca
acaacaacaGTGGCTGCCGTCGCGCCGCCTGTACTACAACCACCTCATGC
ACGCCGCGTGCGTGTCGGAGCACTACTCGCTGCTCAACGTCGCGCACGCC
GAGATGCGCCGCTGCCGCATCGCGCCCGACGCCCTCACGGACGACATCCT
GCTCACGGCCGCGCTGGACCAGCGCCACCACACGCAGGCACAGCTGCTGC
Tgcacgcgctcgacgaccgagcgcgcgcgctggcgccgtgcgcgctggcc
gcgctcatgcgcgacgccgcgcgtcgccgacagcccgacgccgtcgccgc
gctgcacgcgcAGTACGTCCGCCATCTGCCCGCCGACCAGCGCGAGCTGC
CGGCCGTGCTGTCGCCGTTGGCCGTGCGACAGCGCGTGCCCTccgccgcc
gccgccgccgccgctgccgccgccgAACAGCCGCCGTCGGAGAGCGACGC
CGCGCTGGCGAGAGCCGACCCTACGCTGGCCGCCTTCCATGCGTTCCGTG
cgtgcggcgccgcgccgcacgcgctgcgccTGTTGCGCCTCATGACCGAT
ACGTTTGCATTGCGCCCGTCGCACTTGGTGTACTCGCTCGTGGTGGACAC
CTGTTGGAAGGCGGGCGATATGCTGGAGGCCGAGCGGCTCAAGGCCACCA
TGCTCGACGCCGCGTCGGCGGACGGCGCTTGA

protein sequence of Ggra1108.t1

>Ggra1108.t1 ID=Ggra1108.t1|Name=Ggra1108.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=494bp
MLRRLQPLRRRWPWPSSSSSPLPRRAVASSAAAAAAAAPPTPRAWRGLSR
ARLQRMRRKSASAPPPRCAASLQRAVLDSLLQSALQQPPPHAAPQAVRLL
HAAARRPGSSSSNSNSGGGGGRVVRPSAALVGRLVAAVAQHAAHSAAVAP
LTAGGADAAVEAALRVAALLRARVDAELLLQVVRAAELDARLRTRVMRVW
SVWRAIRSLQLAPTPRLAFESFRVCARALDVQSAAVFMHFAFLNGMYSDD
QQQRQQQQQQQQQQQQQQQQWLPSRRLYYNHLMHAACVSEHYSLLNVAHA
EMRRCRIAPDALTDDILLTAALDQRHHTQAQLLLHALDDRARALAPCALA
ALMRDAARRRQPDAVAALHAQYVRHLPADQRELPAVLSPLAVRQRVPSAA
AAAAAAAAEQPPSESDAALARADPTLAAFHAFRACGAAPHALRLLRLMTD
TFALRPSHLVYSLVVDTCWKAGDMLEAERLKATMLDAASADGA*

mRNA from alignment at tig00000945_pilon:67628..69109+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1108.t1 ID=Ggra1108.t1|Name=Ggra1108.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000945_pilon:67628..69109+ (Gracilaria gracilis GNS1m male)
ATGCTGCGCCGGCTGCAGCCGCTGCGTCGCCGCTGGCCATGGCCGTCGTC
GTCGTCGTCGCCGTTGCCGCGTCGCGCCGTCGCGTCCTCCGCTGCTGCCG
CTGCCGCCGCGGCGCCGCCGACGCCGCGCGCGTGGCGCGGGCTATCGCGC
GCGCGGCTGCAGCGTATGCGGCGTAAGTCGGCGTCCGCGCCGCCGCCGCG
CTGCGCGGCCTCGCTACAGCGCGCCGTGCTAGACAGTCTGCTGCAGTCGG
CGCTGCAGCAGCCGCCGCCGCACGCGGCGCCGCAAGCGGTACGTCTGCTA
CACGCGGCGGCGCGCCGCCCCGGCAGCAGCAGCAGCAACAGCAACAGCGG
CGGTGGCGGCGGGCGGGTGGTGCGGCCGTCTGCGGCGCTGGTGGGGCGAC
TGGTGGCGGCCGTGGCGCAGCACGCGGCGCACAGCGCCGCCGTGGCGCCG
CTCACGGCCGGCGGCGCCGACGCGGCTGTGGAGGCTGCGCTGCGCGTGGC
GGCGCTGCTGCGCGCGCGCGTGGACGCCGAGCTGCTGCTGCAGGTGGTGC
GCGCCGCCGAGCTGGACGCGCGGCTGCGCACGCGCGTCATGCGCGTGTGG
TCCGTGTGGCGCGCGATCAGGTCGTTGCAGCTGGCGCCCACGCCGCGCCT
GGCGTTTGAGAGCTTCCGCGTGTGTGCGCGCGCGCTCGACGTGCAGTCGG
CTGCCGTCTTCATGCACTTTGCCTTTCTCAATGGCATGTACAGCGACGAC
caacaacaacgacaacaacaacaacaacaacaacaacaacaacaacaaca
acaacaacaGTGGCTGCCGTCGCGCCGCCTGTACTACAACCACCTCATGC
ACGCCGCGTGCGTGTCGGAGCACTACTCGCTGCTCAACGTCGCGCACGCC
GAGATGCGCCGCTGCCGCATCGCGCCCGACGCCCTCACGGACGACATCCT
GCTCACGGCCGCGCTGGACCAGCGCCACCACACGCAGGCACAGCTGCTGC
Tgcacgcgctcgacgaccgagcgcgcgcgctggcgccgtgcgcgctggcc
gcgctcatgcgcgacgccgcgcgtcgccgacagcccgacgccgtcgccgc
gctgcacgcgcAGTACGTCCGCCATCTGCCCGCCGACCAGCGCGAGCTGC
CGGCCGTGCTGTCGCCGTTGGCCGTGCGACAGCGCGTGCCCTccgccgcc
gccgccgccgccgctgccgccgccgAACAGCCGCCGTCGGAGAGCGACGC
CGCGCTGGCGAGAGCCGACCCTACGCTGGCCGCCTTCCATGCGTTCCGTG
cgtgcggcgccgcgccgcacgcgctgcgccTGTTGCGCCTCATGACCGAT
ACGTTTGCATTGCGCCCGTCGCACTTGGTGTACTCGCTCGTGGTGGACAC
CTGTTGGAAGGCGGGCGATATGCTGGAGGCCGAGCGGCTCAAGGCCACCA
TGCTCGACGCCGCGTCGGCGGACGGCGCTTGA

Coding sequence (CDS) from alignment at tig00000945_pilon:67628..69109+

>Ggra1108.t1 ID=Ggra1108.t1|Name=Ggra1108.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1482bp|location=Sequence derived from alignment at tig00000945_pilon:67628..69109+ (Gracilaria gracilis GNS1m male)
ATGCTGCGCCGGCTGCAGCCGCTGCGTCGCCGCTGGCCATGGCCGTCGTC
GTCGTCGTCGCCGTTGCCGCGTCGCGCCGTCGCGTCCTCCGCTGCTGCCG
CTGCCGCCGCGGCGCCGCCGACGCCGCGCGCGTGGCGCGGGCTATCGCGC
GCGCGGCTGCAGCGTATGCGGCGTAAGTCGGCGTCCGCGCCGCCGCCGCG
CTGCGCGGCCTCGCTACAGCGCGCCGTGCTAGACAGTCTGCTGCAGTCGG
CGCTGCAGCAGCCGCCGCCGCACGCGGCGCCGCAAGCGGTACGTCTGCTA
CACGCGGCGGCGCGCCGCCCCGGCAGCAGCAGCAGCAACAGCAACAGCGG
CGGTGGCGGCGGGCGGGTGGTGCGGCCGTCTGCGGCGCTGGTGGGGCGAC
TGGTGGCGGCCGTGGCGCAGCACGCGGCGCACAGCGCCGCCGTGGCGCCG
CTCACGGCCGGCGGCGCCGACGCGGCTGTGGAGGCTGCGCTGCGCGTGGC
GGCGCTGCTGCGCGCGCGCGTGGACGCCGAGCTGCTGCTGCAGGTGGTGC
GCGCCGCCGAGCTGGACGCGCGGCTGCGCACGCGCGTCATGCGCGTGTGG
TCCGTGTGGCGCGCGATCAGGTCGTTGCAGCTGGCGCCCACGCCGCGCCT
GGCGTTTGAGAGCTTCCGCGTGTGTGCGCGCGCGCTCGACGTGCAGTCGG
CTGCCGTCTTCATGCACTTTGCCTTTCTCAATGGCATGTACAGCGACGAC
caacaacaacgacaacaacaacaacaacaacaacaacaacaacaacaaca
acaacaacaGTGGCTGCCGTCGCGCCGCCTGTACTACAACCACCTCATGC
ACGCCGCGTGCGTGTCGGAGCACTACTCGCTGCTCAACGTCGCGCACGCC
GAGATGCGCCGCTGCCGCATCGCGCCCGACGCCCTCACGGACGACATCCT
GCTCACGGCCGCGCTGGACCAGCGCCACCACACGCAGGCACAGCTGCTGC
Tgcacgcgctcgacgaccgagcgcgcgcgctggcgccgtgcgcgctggcc
gcgctcatgcgcgacgccgcgcgtcgccgacagcccgacgccgtcgccgc
gctgcacgcgcAGTACGTCCGCCATCTGCCCGCCGACCAGCGCGAGCTGC
CGGCCGTGCTGTCGCCGTTGGCCGTGCGACAGCGCGTGCCCTccgccgcc
gccgccgccgccgctgccgccgccgAACAGCCGCCGTCGGAGAGCGACGC
CGCGCTGGCGAGAGCCGACCCTACGCTGGCCGCCTTCCATGCGTTCCGTG
cgtgcggcgccgcgccgcacgcgctgcgccTGTTGCGCCTCATGACCGAT
ACGTTTGCATTGCGCCCGTCGCACTTGGTGTACTCGCTCGTGGTGGACAC
CTGTTGGAAGGCGGGCGATATGCTGGAGGCCGAGCGGCTCAAGGCCACCA
TGCTCGACGCCGCGTCGGCGGACGGCGCTTGA