Ggra11078.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11078.t1
Unique NameGgra11078.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:62385..63035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001745007.1
Preferred namePSMB6
PFAMsProteasome
Max annot lvl33154|Opisthokonta
KEGG koko:K02738,ko:K02741
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0001889,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003674,GO:0003824,GO:0004175,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009617,GO:0009628,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0014070,GO:0014889,GO:0016020,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019774,GO:0019882,GO:0019941,GO:0030071,GO:0030162,GO:0030163,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0031984,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034097,GO:0034515,GO:0036211,GO:0042175,GO:0042221,GO:0042493,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043279,GO:0043412,GO:0043500,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048536,GO:0048538,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051246,GO:0051247,GO:0051336,GO:0051602,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0060255,GO:0061008,GO:0062033,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070555,GO:0070628,GO:0070646,GO:0070647,GO:0070887,GO:0071214,GO:0071257,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0080090,GO:0090068,GO:0098586,GO:0098827,GO:0104004,GO:0140096,GO:1901423,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990111,GO:2000116,GO:2001252
Evalue1.42e-101
EggNOG OGsKOG0174@1|root,KOG0174@2759|Eukaryota,38EH1@33154|Opisthokonta
EC3.4.25.1
Descriptionthreonine-type endopeptidase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11078Ggra11078Gracilaria gracilis GNS1m malegenetig00000207_pilon 62385..63035 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11078.t1.stop1Ggra11078.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 62385..62387 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11078.t1.CDS1Ggra11078.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 62385..63035 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11078.t1.exon1Ggra11078.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 62385..63035 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11078.t1.start1Ggra11078.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 63033..63035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11078.t1Ggra11078.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 62385..63035 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11078.t1 ID=Ggra11078.t1|Name=Ggra11078.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=217bp
MNPIEPEWTSTEHSMGTSIMAVAFDGGVVMGADSRTTTGSYIANRVSDKI
TPMTDKIFCCRSGSAADTQIISDYVRHYLSMHAIELSEEPDVATAAKVFR
TFCYYNKEQLMAGIIVAGHDAKKGGQVFTIPLGGALVQQPFAIGGSGSSY
IYGYCDANFKDGMSKEECKEFVKNALSLAMSRDGSSGGVIRLVIIDKGGA
TREFHPGNKLPVFWQG*
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spliced messenger RNA

>Ggra11078.t1 ID=Ggra11078.t1|Name=Ggra11078.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000207_pilon:62385..63035- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCCGATCGAACCAGAATGGACAAGCACCGAGCATTCGATGGGGAC
GTCCATCATGGCCGTTGCTTTTGATGGCGGTGTGGTCATGGGAGCAGACT
CTCGAACCACCACTGGTTCCTATATCGCGAATCGAGTCTCTGATAAGATT
ACGCCTATGACAGACAAGATTTTCTGCTGTCGTTCAGGATCTGCAGCTGA
CACCCAAATTATCTCAGACTACGTCCGTCACTATCTTTCAATGCACGCGA
TCGAACTGTCAGAGGAACCGGATGTGGCTACTGCTGCGAAAGTTTTCCGA
ACGTTCTGTTACTATAACAAAGAGCAGCTTATGGCTGGAATCATTGTGGC
CGGACACGATGCGAAGAAAGGAGGCCAGGTTTTCACGATCCCACTTGGAG
GGGCTTTAGTTCAACAACCGTTCGCAATAGGTGGTTCAGGCTCTTCATAC
ATCTATGGTTACTGCGATGCGAACTTCAAGGATGGCATGTCAAAAGAAGA
ATGCAAAGAATTCGTGAAGAATGCTCTCTCTCTCGCGATGTCTCGAGATG
GCAGTTCCGGTGGAGTCATTCGGTTAGTAATCATTGATAAGGGTGGCGCC
ACAAGGGAGTTCCATCCTGGAAACAAACTACCAGTGTTTTGGCAGGGATA
A
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protein sequence of Ggra11078.t1

>Ggra11078.t1 ID=Ggra11078.t1|Name=Ggra11078.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MNPIEPEWTSTEHSMGTSIMAVAFDGGVVMGADSRTTTGSYIANRVSDKI
TPMTDKIFCCRSGSAADTQIISDYVRHYLSMHAIELSEEPDVATAAKVFR
TFCYYNKEQLMAGIIVAGHDAKKGGQVFTIPLGGALVQQPFAIGGSGSSY
IYGYCDANFKDGMSKEECKEFVKNALSLAMSRDGSSGGVIRLVIIDKGGA
TREFHPGNKLPVFWQG*
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mRNA from alignment at tig00000207_pilon:62385..63035-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11078.t1 ID=Ggra11078.t1|Name=Ggra11078.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000207_pilon:62385..63035- (Gracilaria gracilis GNS1m male)
ATGAACCCGATCGAACCAGAATGGACAAGCACCGAGCATTCGATGGGGAC
GTCCATCATGGCCGTTGCTTTTGATGGCGGTGTGGTCATGGGAGCAGACT
CTCGAACCACCACTGGTTCCTATATCGCGAATCGAGTCTCTGATAAGATT
ACGCCTATGACAGACAAGATTTTCTGCTGTCGTTCAGGATCTGCAGCTGA
CACCCAAATTATCTCAGACTACGTCCGTCACTATCTTTCAATGCACGCGA
TCGAACTGTCAGAGGAACCGGATGTGGCTACTGCTGCGAAAGTTTTCCGA
ACGTTCTGTTACTATAACAAAGAGCAGCTTATGGCTGGAATCATTGTGGC
CGGACACGATGCGAAGAAAGGAGGCCAGGTTTTCACGATCCCACTTGGAG
GGGCTTTAGTTCAACAACCGTTCGCAATAGGTGGTTCAGGCTCTTCATAC
ATCTATGGTTACTGCGATGCGAACTTCAAGGATGGCATGTCAAAAGAAGA
ATGCAAAGAATTCGTGAAGAATGCTCTCTCTCTCGCGATGTCTCGAGATG
GCAGTTCCGGTGGAGTCATTCGGTTAGTAATCATTGATAAGGGTGGCGCC
ACAAGGGAGTTCCATCCTGGAAACAAACTACCAGTGTTTTGGCAGGGATA
A
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Coding sequence (CDS) from alignment at tig00000207_pilon:62385..63035-

>Ggra11078.t1 ID=Ggra11078.t1|Name=Ggra11078.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=651bp|location=Sequence derived from alignment at tig00000207_pilon:62385..63035- (Gracilaria gracilis GNS1m male)
ATGAACCCGATCGAACCAGAATGGACAAGCACCGAGCATTCGATGGGGAC
GTCCATCATGGCCGTTGCTTTTGATGGCGGTGTGGTCATGGGAGCAGACT
CTCGAACCACCACTGGTTCCTATATCGCGAATCGAGTCTCTGATAAGATT
ACGCCTATGACAGACAAGATTTTCTGCTGTCGTTCAGGATCTGCAGCTGA
CACCCAAATTATCTCAGACTACGTCCGTCACTATCTTTCAATGCACGCGA
TCGAACTGTCAGAGGAACCGGATGTGGCTACTGCTGCGAAAGTTTTCCGA
ACGTTCTGTTACTATAACAAAGAGCAGCTTATGGCTGGAATCATTGTGGC
CGGACACGATGCGAAGAAAGGAGGCCAGGTTTTCACGATCCCACTTGGAG
GGGCTTTAGTTCAACAACCGTTCGCAATAGGTGGTTCAGGCTCTTCATAC
ATCTATGGTTACTGCGATGCGAACTTCAAGGATGGCATGTCAAAAGAAGA
ATGCAAAGAATTCGTGAAGAATGCTCTCTCTCTCGCGATGTCTCGAGATG
GCAGTTCCGGTGGAGTCATTCGGTTAGTAATCATTGATAAGGGTGGCGCC
ACAAGGGAGTTCCATCCTGGAAACAAACTACCAGTGTTTTGGCAGGGATA
A
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