Ggra11077.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra11077.t1
Unique Name	Ggra11077.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	623

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000207_pilon	contig	tig00000207_pilon:60294..62162 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703672.1
Preferred name	MTHFR1
PFAMs	MTHFR
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00081
KEGG ko	ko:K00297,ko:K10901
KEGG Reaction	R01224,R07168
KEGG Pathway	ko00670,ko00720,ko01100,ko01120,ko01200,ko01523,ko03440,ko03460,map00670,map00720,map01100,map01120,map01200,map01523,map03440,map03460
KEGG Module	M00295,M00377,M00414
GOs	GO:0003674,GO:0003824,GO:0004489,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114
Evalue	3.95e-303
EggNOG OGs	COG0685@1\|root,KOG0564@2759\|Eukaryota
EC	1.5.1.20,3.6.4.12
Description	methylenetetrahydrofolate reductase (NAD(P)H) activity
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra11077	Ggra11077	Gracilaria gracilis GNS1m male	gene	tig00000207_pilon 60294..62162 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11077.t1.start1	Ggra11077.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000207_pilon 60294..60296 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11077.t1.CDS1	Ggra11077.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000207_pilon 60294..62162 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11077.t1.exon1	Ggra11077.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000207_pilon 60294..62162 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11077.t1.stop1	Ggra11077.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000207_pilon 62160..62162 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11077.t1	Ggra11077.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000207_pilon 60294..62162 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000207_pilon:60294..62162+
coding sequence from alignment at tig00000207_pilon:60294..62162+

mRNA sequence

>Ggra11077.t1 ID=Ggra11077.t1|Name=Ggra11077.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=623bp
MTAHSMNGSSSPGVSFDSDPNLRHLPRIADKIRQRAEENRPFFSFEYFPP
KTETGVCNLYQRVERMTAVEPLFCDVTWGAGGSTSDLTLELSGNIQKYLG
VDVMMHLTCTNMPAGRVLDGLEGAKAHGIRNILALRGDPPAGKEWTKCED
GFEHGTDLVRFIRANYGDYFGICVAGYPEGHPAGFLDGKISMDEEMEFLK
EKVDAGADFIITQMFYDVDTFLGFVRDCRKAGITVPILPGILPIQNYNGF
KRMTGFCKTFVPQAILDAMEPIKDDDLAVKEFGINLGVDMCKRILKSGLC
PGIHFYSLNLENSVMGIIDKLNLIPRTESIRSLPWRPATVDKRRNENVRP
IYWANRPKSYLDRTSTWDDFPNGRWGDNRSPAYGDLADYHLLGGGGWASA
GQRTEAAKRYGEIRDFDDVVSVFTRFQKGELKRLPWAETEELATETSVIS
APLLWLNRNGLLTINSQPRVNAAPSGDVTVGWGTNGGYVYQKAYLEFFAK
PEIVDALFEAATTFPSLTIYAAKAGSGELRTNAKQKSTCAVTWGVFPDRE
VLQPTVVDPDSFLVWKNEAFNVWTNVWAELYDERSPSCSVLKELRDSLYL
INVIDNDYVGGDIFAIFKTLLS*

spliced messenger RNA

>Ggra11077.t1 ID=Ggra11077.t1|Name=Ggra11077.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1869bp|location=Sequence derived from alignment at tig00000207_pilon:60294..62162+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCCACAGTATGAACGGATCATCTTCTCCGGGTGTTTCTTTCGA
TTCTGATCCGAATCTCCGTCACTTACCGCGGATTGCAGACAAGATTCGTC
AGCGTGCAGAAGAGAACCGCCCGTTCTTTTCCTTCGAGTACTTTCCTCCG
AAGACCGAAACCGGAGTTTGTAATCTCTACCAGCGCGTGGAGCGGATGAC
CGCTGTGGAACCTCTTTTCTGCGATGTCACTTGGGGCGCCGGTGGTTCCA
CAAGCGATCTGACACTTGAGCTCTCCGGAAACATTCAGAAGTATCTCGGG
GTGGATGTCATGATGCACTTGACGTGCACCAACATGCCCGCAGGAAGAGT
TCTGGATGGTTTGGAGGGCGCCAAAGCCCATGGTATTCGTAATATTCTCG
CCTTGCGAGGAGACCCACCGGCCGGTAAGGAATGGACAAAGTGCGAGGAT
GGTTTCGAACATGGTACGGATCTTGTTCGCTTCATCCGCGCCAACTACGG
GGACTACTTTGGTATTTGCGTCGCGGGCTATCCGGAGGGTCACCCTGCTG
GGTTTTTAGATGGTAAGATTTCAATGGACGAAGAAATGGAATTCTTGAAG
GAGAAGGTTGACGCAGGGGCGGATTTCATTATCACTCAAATGTTTTATGA
TGTTGATACCTTCCTTGGCTTTGTTCGTGACTGTCGGAAAGCTGGCATTA
CCGTCCCTATATTGCCGGGTATTCTTCCTATTCAAAATTATAATGGATTC
AAGCGTATGACAGGGTTCTGCAAAACATTTGTCCCCCAGGCTATTCTTGA
TGCAATGGAACCGATTAAAGACGATGACCTGGCAGTGAAGGAATTCGGTA
TTAATCTTGGTGTCGACATGTGCAAACGTATTCTTAAATCCGGTCTTTGT
CCTGGCATTCACTTCTATTCCCTGAACCTGGAAAACTCTGTTATGGGCAT
CATTGATAAGCTTAACCTCATTCCCAGGACTGAATCTATTCGCTCTCTCC
CATGGCGTCCAGCCACTGTGGATAAGCGCCGTAATGAGAATGTGCGCCCT
ATCTACTGGGCTAATAGACCGAAGTCGTACCTTGATCGTACATCTACTTG
GGATGACTTTCCGAACGGACGTTGGGGGGATAACAGGTCGCCTGCTTACG
GTGATCTTGCTGATTATCACCTGCTGGGTGGCGGAGGTTGGGCCTCTGCT
GGGCAGAGAACCGAAGCTGCAAAGCGATACGGAGAGATCAGGGACTTTGA
CGATGTCGTTAGTGTGTTCACAAGGTTCCAGAAGGGTGAGCTCAAGAGGC
TGCCATGGGCGGAAACCGAAGAATTGGCTACTGAAACATCTGTGATCTCT
GCCCCACTGTTGTGGTTAAATCGTAATGGACTGCTGACGATTAATTCGCA
ACCTCGAGTGAACGCGGCACCTTCTGGAGACGTAACCGTCGGATGGGGTA
CCAATGGAGGATACGTATACCAGAAGGCATACCTGGAGTTCTTCGCAAAG
CCAGAAATTGTGGATGCCTTGTTCGAAGCGGCGACCACCTTCCCATCGCT
GACTATTTACGCGGCAAAGGCTGGAAGTGGTGAACTACGAACAAATGCCA
AGCAAAAGTCCACGTGCGCAGTTACTTGGGGTGTATTCCCGGATCGTGAG
GTTCTACAGCCGACTGTGGTTGATCCAGACTCTTTCCTTGTATGGAAGAA
CGAAGCATTCAACGTATGGACTAACGTGTGGGCTGAACTCTATGATGAGC
GTAGTCCGTCCTGCTCTGTCCTCAAGGAGCTACGTGATTCTCTCTATCTC
ATCAACGTTATCGACAATGATTATGTGGGTGGGGATATTTTCGCTATCTT
CAAGACGCTGTTATCGTAA

protein sequence of Ggra11077.t1

>Ggra11077.t1 ID=Ggra11077.t1|Name=Ggra11077.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=623bp
MTAHSMNGSSSPGVSFDSDPNLRHLPRIADKIRQRAEENRPFFSFEYFPP
KTETGVCNLYQRVERMTAVEPLFCDVTWGAGGSTSDLTLELSGNIQKYLG
VDVMMHLTCTNMPAGRVLDGLEGAKAHGIRNILALRGDPPAGKEWTKCED
GFEHGTDLVRFIRANYGDYFGICVAGYPEGHPAGFLDGKISMDEEMEFLK
EKVDAGADFIITQMFYDVDTFLGFVRDCRKAGITVPILPGILPIQNYNGF
KRMTGFCKTFVPQAILDAMEPIKDDDLAVKEFGINLGVDMCKRILKSGLC
PGIHFYSLNLENSVMGIIDKLNLIPRTESIRSLPWRPATVDKRRNENVRP
IYWANRPKSYLDRTSTWDDFPNGRWGDNRSPAYGDLADYHLLGGGGWASA
GQRTEAAKRYGEIRDFDDVVSVFTRFQKGELKRLPWAETEELATETSVIS
APLLWLNRNGLLTINSQPRVNAAPSGDVTVGWGTNGGYVYQKAYLEFFAK
PEIVDALFEAATTFPSLTIYAAKAGSGELRTNAKQKSTCAVTWGVFPDRE
VLQPTVVDPDSFLVWKNEAFNVWTNVWAELYDERSPSCSVLKELRDSLYL
INVIDNDYVGGDIFAIFKTLLS*

mRNA from alignment at tig00000207_pilon:60294..62162+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra11077.t1 ID=Ggra11077.t1|Name=Ggra11077.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1869bp|location=Sequence derived from alignment at tig00000207_pilon:60294..62162+ (Gracilaria gracilis GNS1m male)
ATGACCGCCCACAGTATGAACGGATCATCTTCTCCGGGTGTTTCTTTCGA
TTCTGATCCGAATCTCCGTCACTTACCGCGGATTGCAGACAAGATTCGTC
AGCGTGCAGAAGAGAACCGCCCGTTCTTTTCCTTCGAGTACTTTCCTCCG
AAGACCGAAACCGGAGTTTGTAATCTCTACCAGCGCGTGGAGCGGATGAC
CGCTGTGGAACCTCTTTTCTGCGATGTCACTTGGGGCGCCGGTGGTTCCA
CAAGCGATCTGACACTTGAGCTCTCCGGAAACATTCAGAAGTATCTCGGG
GTGGATGTCATGATGCACTTGACGTGCACCAACATGCCCGCAGGAAGAGT
TCTGGATGGTTTGGAGGGCGCCAAAGCCCATGGTATTCGTAATATTCTCG
CCTTGCGAGGAGACCCACCGGCCGGTAAGGAATGGACAAAGTGCGAGGAT
GGTTTCGAACATGGTACGGATCTTGTTCGCTTCATCCGCGCCAACTACGG
GGACTACTTTGGTATTTGCGTCGCGGGCTATCCGGAGGGTCACCCTGCTG
GGTTTTTAGATGGTAAGATTTCAATGGACGAAGAAATGGAATTCTTGAAG
GAGAAGGTTGACGCAGGGGCGGATTTCATTATCACTCAAATGTTTTATGA
TGTTGATACCTTCCTTGGCTTTGTTCGTGACTGTCGGAAAGCTGGCATTA
CCGTCCCTATATTGCCGGGTATTCTTCCTATTCAAAATTATAATGGATTC
AAGCGTATGACAGGGTTCTGCAAAACATTTGTCCCCCAGGCTATTCTTGA
TGCAATGGAACCGATTAAAGACGATGACCTGGCAGTGAAGGAATTCGGTA
TTAATCTTGGTGTCGACATGTGCAAACGTATTCTTAAATCCGGTCTTTGT
CCTGGCATTCACTTCTATTCCCTGAACCTGGAAAACTCTGTTATGGGCAT
CATTGATAAGCTTAACCTCATTCCCAGGACTGAATCTATTCGCTCTCTCC
CATGGCGTCCAGCCACTGTGGATAAGCGCCGTAATGAGAATGTGCGCCCT
ATCTACTGGGCTAATAGACCGAAGTCGTACCTTGATCGTACATCTACTTG
GGATGACTTTCCGAACGGACGTTGGGGGGATAACAGGTCGCCTGCTTACG
GTGATCTTGCTGATTATCACCTGCTGGGTGGCGGAGGTTGGGCCTCTGCT
GGGCAGAGAACCGAAGCTGCAAAGCGATACGGAGAGATCAGGGACTTTGA
CGATGTCGTTAGTGTGTTCACAAGGTTCCAGAAGGGTGAGCTCAAGAGGC
TGCCATGGGCGGAAACCGAAGAATTGGCTACTGAAACATCTGTGATCTCT
GCCCCACTGTTGTGGTTAAATCGTAATGGACTGCTGACGATTAATTCGCA
ACCTCGAGTGAACGCGGCACCTTCTGGAGACGTAACCGTCGGATGGGGTA
CCAATGGAGGATACGTATACCAGAAGGCATACCTGGAGTTCTTCGCAAAG
CCAGAAATTGTGGATGCCTTGTTCGAAGCGGCGACCACCTTCCCATCGCT
GACTATTTACGCGGCAAAGGCTGGAAGTGGTGAACTACGAACAAATGCCA
AGCAAAAGTCCACGTGCGCAGTTACTTGGGGTGTATTCCCGGATCGTGAG
GTTCTACAGCCGACTGTGGTTGATCCAGACTCTTTCCTTGTATGGAAGAA
CGAAGCATTCAACGTATGGACTAACGTGTGGGCTGAACTCTATGATGAGC
GTAGTCCGTCCTGCTCTGTCCTCAAGGAGCTACGTGATTCTCTCTATCTC
ATCAACGTTATCGACAATGATTATGTGGGTGGGGATATTTTCGCTATCTT
CAAGACGCTGTTATCGTAA

Coding sequence (CDS) from alignment at tig00000207_pilon:60294..62162+

>Ggra11077.t1 ID=Ggra11077.t1|Name=Ggra11077.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1869bp|location=Sequence derived from alignment at tig00000207_pilon:60294..62162+ (Gracilaria gracilis GNS1m male)
ATGACCGCCCACAGTATGAACGGATCATCTTCTCCGGGTGTTTCTTTCGA
TTCTGATCCGAATCTCCGTCACTTACCGCGGATTGCAGACAAGATTCGTC
AGCGTGCAGAAGAGAACCGCCCGTTCTTTTCCTTCGAGTACTTTCCTCCG
AAGACCGAAACCGGAGTTTGTAATCTCTACCAGCGCGTGGAGCGGATGAC
CGCTGTGGAACCTCTTTTCTGCGATGTCACTTGGGGCGCCGGTGGTTCCA
CAAGCGATCTGACACTTGAGCTCTCCGGAAACATTCAGAAGTATCTCGGG
GTGGATGTCATGATGCACTTGACGTGCACCAACATGCCCGCAGGAAGAGT
TCTGGATGGTTTGGAGGGCGCCAAAGCCCATGGTATTCGTAATATTCTCG
CCTTGCGAGGAGACCCACCGGCCGGTAAGGAATGGACAAAGTGCGAGGAT
GGTTTCGAACATGGTACGGATCTTGTTCGCTTCATCCGCGCCAACTACGG
GGACTACTTTGGTATTTGCGTCGCGGGCTATCCGGAGGGTCACCCTGCTG
GGTTTTTAGATGGTAAGATTTCAATGGACGAAGAAATGGAATTCTTGAAG
GAGAAGGTTGACGCAGGGGCGGATTTCATTATCACTCAAATGTTTTATGA
TGTTGATACCTTCCTTGGCTTTGTTCGTGACTGTCGGAAAGCTGGCATTA
CCGTCCCTATATTGCCGGGTATTCTTCCTATTCAAAATTATAATGGATTC
AAGCGTATGACAGGGTTCTGCAAAACATTTGTCCCCCAGGCTATTCTTGA
TGCAATGGAACCGATTAAAGACGATGACCTGGCAGTGAAGGAATTCGGTA
TTAATCTTGGTGTCGACATGTGCAAACGTATTCTTAAATCCGGTCTTTGT
CCTGGCATTCACTTCTATTCCCTGAACCTGGAAAACTCTGTTATGGGCAT
CATTGATAAGCTTAACCTCATTCCCAGGACTGAATCTATTCGCTCTCTCC
CATGGCGTCCAGCCACTGTGGATAAGCGCCGTAATGAGAATGTGCGCCCT
ATCTACTGGGCTAATAGACCGAAGTCGTACCTTGATCGTACATCTACTTG
GGATGACTTTCCGAACGGACGTTGGGGGGATAACAGGTCGCCTGCTTACG
GTGATCTTGCTGATTATCACCTGCTGGGTGGCGGAGGTTGGGCCTCTGCT
GGGCAGAGAACCGAAGCTGCAAAGCGATACGGAGAGATCAGGGACTTTGA
CGATGTCGTTAGTGTGTTCACAAGGTTCCAGAAGGGTGAGCTCAAGAGGC
TGCCATGGGCGGAAACCGAAGAATTGGCTACTGAAACATCTGTGATCTCT
GCCCCACTGTTGTGGTTAAATCGTAATGGACTGCTGACGATTAATTCGCA
ACCTCGAGTGAACGCGGCACCTTCTGGAGACGTAACCGTCGGATGGGGTA
CCAATGGAGGATACGTATACCAGAAGGCATACCTGGAGTTCTTCGCAAAG
CCAGAAATTGTGGATGCCTTGTTCGAAGCGGCGACCACCTTCCCATCGCT
GACTATTTACGCGGCAAAGGCTGGAAGTGGTGAACTACGAACAAATGCCA
AGCAAAAGTCCACGTGCGCAGTTACTTGGGGTGTATTCCCGGATCGTGAG
GTTCTACAGCCGACTGTGGTTGATCCAGACTCTTTCCTTGTATGGAAGAA
CGAAGCATTCAACGTATGGACTAACGTGTGGGCTGAACTCTATGATGAGC
GTAGTCCGTCCTGCTCTGTCCTCAAGGAGCTACGTGATTCTCTCTATCTC
ATCAACGTTATCGACAATGATTATGTGGGTGGGGATATTTTCGCTATCTT
CAAGACGCTGTTATCGTAA