Ggra11076.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11076.t1
Unique NameGgra11076.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length490
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:58192..59661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707355.1
Preferred namePOLD2
PFAMsDNA_pol_E_B
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02321,ko:K02328
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440,map05166
KEGG ModuleM00261,M00262
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000723,GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006273,GO:0006278,GO:0006279,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019439,GO:0019725,GO:0019985,GO:0022402,GO:0022414,GO:0022616,GO:0030894,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0033567,GO:0033683,GO:0034061,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0034655,GO:0042575,GO:0042592,GO:0042769,GO:0043137,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0043625,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0046700,GO:0050896,GO:0051276,GO:0051321,GO:0051606,GO:0051716,GO:0060249,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0104004,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902969,GO:1902983,GO:1903046,GO:1903047,GO:1903459,GO:1903460,GO:1904161,GO:1990234
Evalue3.48e-74
EggNOG OGsCOG1311@1|root,KOG2732@2759|Eukaryota
Descriptiondna polymerase delta
COG categoryL
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11076Ggra11076Gracilaria gracilis GNS1m malegenetig00000207_pilon 58192..59661 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11076.t1.stop1Ggra11076.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 58192..58194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11076.t1.CDS1Ggra11076.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 58192..59661 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11076.t1.exon1Ggra11076.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 58192..59661 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11076.t1.start1Ggra11076.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 59659..59661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11076.t1Ggra11076.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 58192..59661 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11076.t1 ID=Ggra11076.t1|Name=Ggra11076.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=490bp
MATGENGSHTIERRAIAIDSAPAKRFLLPPKKRYEPQYAHIYFCRLTALR
PALQAAAEDNFGPPSEKLRYAKRIVNVSGESMQDIESVIIGVVFRQMKKP
SILALYEQPSHDLIPSPPLRASTPYPGPDDVIFLEDENGRCTLDASALDS
IPDSFVTGFIVAVKGAEDRSTGTFKVSGFSSILPAPQMALKRYPEDSYIC
LLSSLSLSTPSFALELLLEFLKGNTLEEDEAFQRNVVSVVIAGNLIPHVE
ATPMHKPLAVGDKERIASPMVDADRFLSGLASTVPVFHMPGENDATNCLL
PQQPLHRCLLPSSARNSNFKRVPNPFACNFEGRLLLATSGQNVSDFALYQ
AQYDTGSKEETLGSKEKEKKFEPSGERVTDILESMLNNRHIAPTCPDTLG
SYPFYEMDPFVVESTPHIFVAGNQKEFGTRTMNVPRETSQESSEEMNIDG
ELGGSVRLISVPRFDSTGQAVFVNLRNMECFVREFGGAV*
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spliced messenger RNA

>Ggra11076.t1 ID=Ggra11076.t1|Name=Ggra11076.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00000207_pilon:58192..59661- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACCGGCGAAAACGGGAGTCACACAATCGAACGGAGAGCCATTGC
AATTGATTCCGCACCGGCAAAGCGCTTCTTGCTGCCGCCAAAGAAACGAT
ATGAACCTCAATATGCACATATATATTTCTGTCGTTTGACTGCATTACGT
CCCGCTCTACAAGCCGCTGCAGAAGACAATTTCGGTCCTCCATCAGAAAA
GCTGCGCTACGCAAAACGAATCGTAAATGTTTCTGGCGAAAGTATGCAAG
ACATTGAATCAGTTATCATTGGCGTTGTATTTCGACAAATGAAGAAGCCT
AGTATTCTTGCGCTCTACGAACAACCCAGTCATGACCTCATTCCCTCTCC
ACCCCTACGTGCTTCCACTCCTTACCCTGGACCCGATGATGTAATATTTC
TGGAAGATGAGAATGGAAGATGCACTCTGGACGCCTCCGCTCTTGATTCA
ATACCGGACTCCTTCGTCACGGGCTTTATCGTTGCAGTGAAGGGAGCGGA
AGATCGTTCCACGGGCACATTCAAAGTATCGGGCTTCTCTTCAATCCTTC
CTGCGCCTCAAATGGCTTTGAAGCGATATCCTGAAGACTCATACATATGT
CTGCTTTCTTCACTCTCCCTTTCAACCCCTTCATTTGCGCTGGAACTTCT
ACTGGAATTTCTCAAGGGAAACACCCTAGAAGAAGATGAAGCATTTCAAC
GAAATGTAGTGTCTGTGGTCATTGCCGGTAATCTAATACCACATGTGGAG
GCTACACCAATGCACAAGCCATTAGCTGTCGGGGACAAAGAGAGAATTGC
CTCACCGATGGTAGATGCAGACAGGTTTCTTTCTGGGCTGGCTTCGACAG
TGCCCGTCTTCCACATGCCTGGTGAGAATGATGCCACGAACTGTTTGCTT
CCACAGCAACCGCTGCATCGCTGTTTGCTTCCTAGTTCGGCCAGGAATTC
CAACTTCAAGCGTGTTCCTAATCCATTTGCATGTAATTTTGAAGGGAGGT
TGTTGTTGGCTACATCCGGCCAGAACGTTAGCGATTTCGCGCTTTATCAA
GCCCAGTATGATACAGGCAGCAAGGAAGAAACGCTGGGATCAAAAGAGAA
GGAAAAGAAGTTCGAACCAAGTGGGGAAAGGGTGACGGATATTCTTGAAA
GCATGCTAAACAATAGACATATTGCCCCAACATGCCCTGACACGCTTGGC
TCATATCCATTCTACGAAATGGATCCATTTGTTGTGGAAAGCACACCGCA
CATATTTGTCGCAGGAAATCAGAAGGAGTTTGGAACAAGGACTATGAATG
TGCCGAGGGAGACTTCTCAAGAAAGCAGTGAAGAGATGAACATTGATGGG
GAGTTGGGTGGTTCTGTGAGATTAATTTCAGTACCACGCTTTGATTCTAC
TGGCCAAGCCGTGTTTGTGAACTTGAGGAATATGGAGTGTTTCGTAAGAG
AATTTGGTGGTGCAGTATGA
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protein sequence of Ggra11076.t1

>Ggra11076.t1 ID=Ggra11076.t1|Name=Ggra11076.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=490bp
MATGENGSHTIERRAIAIDSAPAKRFLLPPKKRYEPQYAHIYFCRLTALR
PALQAAAEDNFGPPSEKLRYAKRIVNVSGESMQDIESVIIGVVFRQMKKP
SILALYEQPSHDLIPSPPLRASTPYPGPDDVIFLEDENGRCTLDASALDS
IPDSFVTGFIVAVKGAEDRSTGTFKVSGFSSILPAPQMALKRYPEDSYIC
LLSSLSLSTPSFALELLLEFLKGNTLEEDEAFQRNVVSVVIAGNLIPHVE
ATPMHKPLAVGDKERIASPMVDADRFLSGLASTVPVFHMPGENDATNCLL
PQQPLHRCLLPSSARNSNFKRVPNPFACNFEGRLLLATSGQNVSDFALYQ
AQYDTGSKEETLGSKEKEKKFEPSGERVTDILESMLNNRHIAPTCPDTLG
SYPFYEMDPFVVESTPHIFVAGNQKEFGTRTMNVPRETSQESSEEMNIDG
ELGGSVRLISVPRFDSTGQAVFVNLRNMECFVREFGGAV*
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mRNA from alignment at tig00000207_pilon:58192..59661-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11076.t1 ID=Ggra11076.t1|Name=Ggra11076.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00000207_pilon:58192..59661- (Gracilaria gracilis GNS1m male)
ATGGCGACCGGCGAAAACGGGAGTCACACAATCGAACGGAGAGCCATTGC
AATTGATTCCGCACCGGCAAAGCGCTTCTTGCTGCCGCCAAAGAAACGAT
ATGAACCTCAATATGCACATATATATTTCTGTCGTTTGACTGCATTACGT
CCCGCTCTACAAGCCGCTGCAGAAGACAATTTCGGTCCTCCATCAGAAAA
GCTGCGCTACGCAAAACGAATCGTAAATGTTTCTGGCGAAAGTATGCAAG
ACATTGAATCAGTTATCATTGGCGTTGTATTTCGACAAATGAAGAAGCCT
AGTATTCTTGCGCTCTACGAACAACCCAGTCATGACCTCATTCCCTCTCC
ACCCCTACGTGCTTCCACTCCTTACCCTGGACCCGATGATGTAATATTTC
TGGAAGATGAGAATGGAAGATGCACTCTGGACGCCTCCGCTCTTGATTCA
ATACCGGACTCCTTCGTCACGGGCTTTATCGTTGCAGTGAAGGGAGCGGA
AGATCGTTCCACGGGCACATTCAAAGTATCGGGCTTCTCTTCAATCCTTC
CTGCGCCTCAAATGGCTTTGAAGCGATATCCTGAAGACTCATACATATGT
CTGCTTTCTTCACTCTCCCTTTCAACCCCTTCATTTGCGCTGGAACTTCT
ACTGGAATTTCTCAAGGGAAACACCCTAGAAGAAGATGAAGCATTTCAAC
GAAATGTAGTGTCTGTGGTCATTGCCGGTAATCTAATACCACATGTGGAG
GCTACACCAATGCACAAGCCATTAGCTGTCGGGGACAAAGAGAGAATTGC
CTCACCGATGGTAGATGCAGACAGGTTTCTTTCTGGGCTGGCTTCGACAG
TGCCCGTCTTCCACATGCCTGGTGAGAATGATGCCACGAACTGTTTGCTT
CCACAGCAACCGCTGCATCGCTGTTTGCTTCCTAGTTCGGCCAGGAATTC
CAACTTCAAGCGTGTTCCTAATCCATTTGCATGTAATTTTGAAGGGAGGT
TGTTGTTGGCTACATCCGGCCAGAACGTTAGCGATTTCGCGCTTTATCAA
GCCCAGTATGATACAGGCAGCAAGGAAGAAACGCTGGGATCAAAAGAGAA
GGAAAAGAAGTTCGAACCAAGTGGGGAAAGGGTGACGGATATTCTTGAAA
GCATGCTAAACAATAGACATATTGCCCCAACATGCCCTGACACGCTTGGC
TCATATCCATTCTACGAAATGGATCCATTTGTTGTGGAAAGCACACCGCA
CATATTTGTCGCAGGAAATCAGAAGGAGTTTGGAACAAGGACTATGAATG
TGCCGAGGGAGACTTCTCAAGAAAGCAGTGAAGAGATGAACATTGATGGG
GAGTTGGGTGGTTCTGTGAGATTAATTTCAGTACCACGCTTTGATTCTAC
TGGCCAAGCCGTGTTTGTGAACTTGAGGAATATGGAGTGTTTCGTAAGAG
AATTTGGTGGTGCAGTATGA
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Coding sequence (CDS) from alignment at tig00000207_pilon:58192..59661-

>Ggra11076.t1 ID=Ggra11076.t1|Name=Ggra11076.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1470bp|location=Sequence derived from alignment at tig00000207_pilon:58192..59661- (Gracilaria gracilis GNS1m male)
ATGGCGACCGGCGAAAACGGGAGTCACACAATCGAACGGAGAGCCATTGC
AATTGATTCCGCACCGGCAAAGCGCTTCTTGCTGCCGCCAAAGAAACGAT
ATGAACCTCAATATGCACATATATATTTCTGTCGTTTGACTGCATTACGT
CCCGCTCTACAAGCCGCTGCAGAAGACAATTTCGGTCCTCCATCAGAAAA
GCTGCGCTACGCAAAACGAATCGTAAATGTTTCTGGCGAAAGTATGCAAG
ACATTGAATCAGTTATCATTGGCGTTGTATTTCGACAAATGAAGAAGCCT
AGTATTCTTGCGCTCTACGAACAACCCAGTCATGACCTCATTCCCTCTCC
ACCCCTACGTGCTTCCACTCCTTACCCTGGACCCGATGATGTAATATTTC
TGGAAGATGAGAATGGAAGATGCACTCTGGACGCCTCCGCTCTTGATTCA
ATACCGGACTCCTTCGTCACGGGCTTTATCGTTGCAGTGAAGGGAGCGGA
AGATCGTTCCACGGGCACATTCAAAGTATCGGGCTTCTCTTCAATCCTTC
CTGCGCCTCAAATGGCTTTGAAGCGATATCCTGAAGACTCATACATATGT
CTGCTTTCTTCACTCTCCCTTTCAACCCCTTCATTTGCGCTGGAACTTCT
ACTGGAATTTCTCAAGGGAAACACCCTAGAAGAAGATGAAGCATTTCAAC
GAAATGTAGTGTCTGTGGTCATTGCCGGTAATCTAATACCACATGTGGAG
GCTACACCAATGCACAAGCCATTAGCTGTCGGGGACAAAGAGAGAATTGC
CTCACCGATGGTAGATGCAGACAGGTTTCTTTCTGGGCTGGCTTCGACAG
TGCCCGTCTTCCACATGCCTGGTGAGAATGATGCCACGAACTGTTTGCTT
CCACAGCAACCGCTGCATCGCTGTTTGCTTCCTAGTTCGGCCAGGAATTC
CAACTTCAAGCGTGTTCCTAATCCATTTGCATGTAATTTTGAAGGGAGGT
TGTTGTTGGCTACATCCGGCCAGAACGTTAGCGATTTCGCGCTTTATCAA
GCCCAGTATGATACAGGCAGCAAGGAAGAAACGCTGGGATCAAAAGAGAA
GGAAAAGAAGTTCGAACCAAGTGGGGAAAGGGTGACGGATATTCTTGAAA
GCATGCTAAACAATAGACATATTGCCCCAACATGCCCTGACACGCTTGGC
TCATATCCATTCTACGAAATGGATCCATTTGTTGTGGAAAGCACACCGCA
CATATTTGTCGCAGGAAATCAGAAGGAGTTTGGAACAAGGACTATGAATG
TGCCGAGGGAGACTTCTCAAGAAAGCAGTGAAGAGATGAACATTGATGGG
GAGTTGGGTGGTTCTGTGAGATTAATTTCAGTACCACGCTTTGATTCTAC
TGGCCAAGCCGTGTTTGTGAACTTGAGGAATATGGAGTGTTTCGTAAGAG
AATTTGGTGGTGCAGTATGA
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