Ggra11074.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra11074.t1
Unique Name	Ggra11074.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	444

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000207_pilon	contig	tig00000207_pilon:51894..53225 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	400682.PAC_15715739
Preferred name	ELAC1
PFAMs	Lactamase_B,Lactamase_B_2
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K00784
KEGG Pathway	ko03013,map03013
GOs	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0031123,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042779,GO:0042780,GO:0042781,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043628,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1905267
Evalue	2.97e-32
EggNOG OGs	COG1234@1\|root,KOG2121@2759\|Eukaryota,38EKA@33154\|Opisthokonta,3BK5I@33208\|Metazoa
EC	3.1.26.11
Description	3'-tRNA processing endoribonuclease activity
COG category	S
BRITE	ko00000,ko00001,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra11074	Ggra11074	Gracilaria gracilis GNS1m male	gene	tig00000207_pilon 51894..53225 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11074.t1.start1	Ggra11074.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000207_pilon 51894..51896 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11074.t1.CDS1	Ggra11074.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000207_pilon 51894..53225 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11074.t1.exon1	Ggra11074.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000207_pilon 51894..53225 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11074.t1.stop1	Ggra11074.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000207_pilon 53223..53225 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11074.t1	Ggra11074.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000207_pilon 51894..53225 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000207_pilon:51894..53225+
coding sequence from alignment at tig00000207_pilon:51894..53225+

mRNA sequence

>Ggra11074.t1 ID=Ggra11074.t1|Name=Ggra11074.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp
MAQLQRSNMRVGLVRNIFISHLHGDHLYGLPGLVMSILGRREIFNKQGDA
TLNVYGPQGIRGFLRMALGVASFRIPGKGALRINELIWPDEFGPRCLHNK
HRNGSTYWKHSIRRLPFEMAGRDIIPQRDGQGRFTYEVTGEEDSNMGERN
SKRRWLGSGPATVLAAPVLHTVPTYAYGVTENVVSQRFDKGKLLELGIPT
DGREEVRMLFEQWLRGERGIWQGKEIPIEEVLQNGRKPRTLCIVGDTYDA
AGAAHIAKSVDVLVHEATNMASGTQTAKSRGHSSTVGASSFARRVGARRL
ILNHASVSYSERKIRAMELEARGMFGAKKAFVARDLSVFNIPTCEEDDND
FAFRRFVGFADSLEFRSPQETPFTDDFVVDSEEDGSAQDEDFDSLKTDDY
SEEPDEEDTPILLDAGEQSVIADDIEIHSSIFREQERQPVVTM*

spliced messenger RNA

>Ggra11074.t1 ID=Ggra11074.t1|Name=Ggra11074.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00000207_pilon:51894..53225+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCAACTTCAACGTTCTAATATGCGAGTGGGACTGGTTCGCAATAT
TTTTATATCCCATCTGCATGGAGACCATCTATACGGTCTTCCTGGTTTGG
TCATGTCCATTCTTGGTCGTCGCGAAATTTTCAATAAGCAAGGAGATGCA
ACCCTCAATGTGTACGGGCCACAGGGCATCAGAGGATTCCTACGCATGGC
TCTTGGGGTTGCGAGTTTTCGGATCCCAGGCAAAGGTGCTTTGAGAATTA
ATGAATTGATCTGGCCCGATGAGTTTGGTCCGCGTTGTTTGCATAACAAG
CATCGAAACGGGAGTACGTATTGGAAACATTCCATAAGGAGACTTCCCTT
TGAGATGGCTGGTAGAGATATCATCCCGCAGAGGGATGGCCAAGGGCGAT
TCACGTACGAAGTTACGGGAGAAGAAGATAGCAATATGGGTGAACGAAAC
TCAAAACGGCGATGGCTTGGTTCTGGGCCTGCCACAGTCTTGGCGGCTCC
TGTTCTACATACTGTTCCAACATACGCATATGGTGTGACAGAGAATGTCG
TAAGCCAGCGTTTTGACAAAGGGAAACTCCTTGAGCTTGGGATTCCAACT
GATGGTCGGGAAGAAGTACGCATGCTTTTCGAGCAATGGCTGAGAGGGGA
AAGGGGAATCTGGCAAGGGAAAGAAATCCCTATTGAAGAAGTGCTACAAA
ATGGAAGGAAGCCTAGAACACTTTGTATTGTAGGAGACACTTATGATGCA
GCCGGAGCGGCTCATATAGCAAAGAGCGTCGATGTTTTGGTTCACGAAGC
GACAAATATGGCTTCGGGAACTCAAACTGCCAAAAGCCGTGGGCATTCAT
CCACAGTAGGTGCTAGCTCATTCGCTCGAAGAGTTGGCGCAAGGCGACTC
ATACTGAACCATGCAAGTGTTTCGTACAGTGAGCGTAAGATCAGAGCAAT
GGAGCTGGAAGCAAGGGGTATGTTTGGAGCTAAGAAGGCGTTCGTGGCAA
GGGACTTGAGTGTGTTTAATATACCTACTTGCGAAGAGGACGACAATGAC
TTTGCGTTTAGAAGGTTTGTTGGTTTTGCAGACTCCCTAGAATTCAGATC
GCCTCAAGAAACCCCCTTCACTGACGACTTCGTGGTTGACAGTGAGGAAG
ATGGGTCGGCCCAAGACGAAGACTTCGATTCACTGAAGACGGATGATTAT
TCTGAAGAACCTGATGAGGAAGACACACCGATTCTGTTAGATGCTGGTGA
GCAGTCGGTCATTGCGGACGATATAGAGATACATAGCAGTATATTCCGTG
AACAAGAAAGACAACCCGTGGTAACTATGTAA

protein sequence of Ggra11074.t1

>Ggra11074.t1 ID=Ggra11074.t1|Name=Ggra11074.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=444bp
MAQLQRSNMRVGLVRNIFISHLHGDHLYGLPGLVMSILGRREIFNKQGDA
TLNVYGPQGIRGFLRMALGVASFRIPGKGALRINELIWPDEFGPRCLHNK
HRNGSTYWKHSIRRLPFEMAGRDIIPQRDGQGRFTYEVTGEEDSNMGERN
SKRRWLGSGPATVLAAPVLHTVPTYAYGVTENVVSQRFDKGKLLELGIPT
DGREEVRMLFEQWLRGERGIWQGKEIPIEEVLQNGRKPRTLCIVGDTYDA
AGAAHIAKSVDVLVHEATNMASGTQTAKSRGHSSTVGASSFARRVGARRL
ILNHASVSYSERKIRAMELEARGMFGAKKAFVARDLSVFNIPTCEEDDND
FAFRRFVGFADSLEFRSPQETPFTDDFVVDSEEDGSAQDEDFDSLKTDDY
SEEPDEEDTPILLDAGEQSVIADDIEIHSSIFREQERQPVVTM*

mRNA from alignment at tig00000207_pilon:51894..53225+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra11074.t1 ID=Ggra11074.t1|Name=Ggra11074.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00000207_pilon:51894..53225+ (Gracilaria gracilis GNS1m male)
ATGGCTCAACTTCAACGTTCTAATATGCGAGTGGGACTGGTTCGCAATAT
TTTTATATCCCATCTGCATGGAGACCATCTATACGGTCTTCCTGGTTTGG
TCATGTCCATTCTTGGTCGTCGCGAAATTTTCAATAAGCAAGGAGATGCA
ACCCTCAATGTGTACGGGCCACAGGGCATCAGAGGATTCCTACGCATGGC
TCTTGGGGTTGCGAGTTTTCGGATCCCAGGCAAAGGTGCTTTGAGAATTA
ATGAATTGATCTGGCCCGATGAGTTTGGTCCGCGTTGTTTGCATAACAAG
CATCGAAACGGGAGTACGTATTGGAAACATTCCATAAGGAGACTTCCCTT
TGAGATGGCTGGTAGAGATATCATCCCGCAGAGGGATGGCCAAGGGCGAT
TCACGTACGAAGTTACGGGAGAAGAAGATAGCAATATGGGTGAACGAAAC
TCAAAACGGCGATGGCTTGGTTCTGGGCCTGCCACAGTCTTGGCGGCTCC
TGTTCTACATACTGTTCCAACATACGCATATGGTGTGACAGAGAATGTCG
TAAGCCAGCGTTTTGACAAAGGGAAACTCCTTGAGCTTGGGATTCCAACT
GATGGTCGGGAAGAAGTACGCATGCTTTTCGAGCAATGGCTGAGAGGGGA
AAGGGGAATCTGGCAAGGGAAAGAAATCCCTATTGAAGAAGTGCTACAAA
ATGGAAGGAAGCCTAGAACACTTTGTATTGTAGGAGACACTTATGATGCA
GCCGGAGCGGCTCATATAGCAAAGAGCGTCGATGTTTTGGTTCACGAAGC
GACAAATATGGCTTCGGGAACTCAAACTGCCAAAAGCCGTGGGCATTCAT
CCACAGTAGGTGCTAGCTCATTCGCTCGAAGAGTTGGCGCAAGGCGACTC
ATACTGAACCATGCAAGTGTTTCGTACAGTGAGCGTAAGATCAGAGCAAT
GGAGCTGGAAGCAAGGGGTATGTTTGGAGCTAAGAAGGCGTTCGTGGCAA
GGGACTTGAGTGTGTTTAATATACCTACTTGCGAAGAGGACGACAATGAC
TTTGCGTTTAGAAGGTTTGTTGGTTTTGCAGACTCCCTAGAATTCAGATC
GCCTCAAGAAACCCCCTTCACTGACGACTTCGTGGTTGACAGTGAGGAAG
ATGGGTCGGCCCAAGACGAAGACTTCGATTCACTGAAGACGGATGATTAT
TCTGAAGAACCTGATGAGGAAGACACACCGATTCTGTTAGATGCTGGTGA
GCAGTCGGTCATTGCGGACGATATAGAGATACATAGCAGTATATTCCGTG
AACAAGAAAGACAACCCGTGGTAACTATGTAA

Coding sequence (CDS) from alignment at tig00000207_pilon:51894..53225+

>Ggra11074.t1 ID=Ggra11074.t1|Name=Ggra11074.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1332bp|location=Sequence derived from alignment at tig00000207_pilon:51894..53225+ (Gracilaria gracilis GNS1m male)
ATGGCTCAACTTCAACGTTCTAATATGCGAGTGGGACTGGTTCGCAATAT
TTTTATATCCCATCTGCATGGAGACCATCTATACGGTCTTCCTGGTTTGG
TCATGTCCATTCTTGGTCGTCGCGAAATTTTCAATAAGCAAGGAGATGCA
ACCCTCAATGTGTACGGGCCACAGGGCATCAGAGGATTCCTACGCATGGC
TCTTGGGGTTGCGAGTTTTCGGATCCCAGGCAAAGGTGCTTTGAGAATTA
ATGAATTGATCTGGCCCGATGAGTTTGGTCCGCGTTGTTTGCATAACAAG
CATCGAAACGGGAGTACGTATTGGAAACATTCCATAAGGAGACTTCCCTT
TGAGATGGCTGGTAGAGATATCATCCCGCAGAGGGATGGCCAAGGGCGAT
TCACGTACGAAGTTACGGGAGAAGAAGATAGCAATATGGGTGAACGAAAC
TCAAAACGGCGATGGCTTGGTTCTGGGCCTGCCACAGTCTTGGCGGCTCC
TGTTCTACATACTGTTCCAACATACGCATATGGTGTGACAGAGAATGTCG
TAAGCCAGCGTTTTGACAAAGGGAAACTCCTTGAGCTTGGGATTCCAACT
GATGGTCGGGAAGAAGTACGCATGCTTTTCGAGCAATGGCTGAGAGGGGA
AAGGGGAATCTGGCAAGGGAAAGAAATCCCTATTGAAGAAGTGCTACAAA
ATGGAAGGAAGCCTAGAACACTTTGTATTGTAGGAGACACTTATGATGCA
GCCGGAGCGGCTCATATAGCAAAGAGCGTCGATGTTTTGGTTCACGAAGC
GACAAATATGGCTTCGGGAACTCAAACTGCCAAAAGCCGTGGGCATTCAT
CCACAGTAGGTGCTAGCTCATTCGCTCGAAGAGTTGGCGCAAGGCGACTC
ATACTGAACCATGCAAGTGTTTCGTACAGTGAGCGTAAGATCAGAGCAAT
GGAGCTGGAAGCAAGGGGTATGTTTGGAGCTAAGAAGGCGTTCGTGGCAA
GGGACTTGAGTGTGTTTAATATACCTACTTGCGAAGAGGACGACAATGAC
TTTGCGTTTAGAAGGTTTGTTGGTTTTGCAGACTCCCTAGAATTCAGATC
GCCTCAAGAAACCCCCTTCACTGACGACTTCGTGGTTGACAGTGAGGAAG
ATGGGTCGGCCCAAGACGAAGACTTCGATTCACTGAAGACGGATGATTAT
TCTGAAGAACCTGATGAGGAAGACACACCGATTCTGTTAGATGCTGGTGA
GCAGTCGGTCATTGCGGACGATATAGAGATACATAGCAGTATATTCCGTG
AACAAGAAAGACAACCCGTGGTAACTATGTAA