Ggra11073.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11073.t1
Unique NameGgra11073.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length235
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:50374..51164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog164328.Phyra76755
PFAMsCBM_25,Gal_mutarotas_2,Glyco_hydro_31,NtCtMGAM_N
Max annot lvl4776|Peronosporales
KEGG rclassRC00028,RC00049,RC00077
KEGG koko:K12316
KEGG ReactionR00028,R00801,R00802
KEGG Pathwayko00052,ko00500,ko01100,ko04142,map00052,map00500,map01100,map04142
Evalue2.02e-06
EggNOG OGsCOG1501@1|root,KOG1065@2759|Eukaryota,3QDUJ@4776|Peronosporales
EC3.2.1.20
DescriptionBelongs to the glycosyl hydrolase 31 family
COG categoryG
CAZyGH31
BRITEko00000,ko00001,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11073Ggra11073Gracilaria gracilis GNS1m malegenetig00000207_pilon 50374..51164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11073.t1Ggra11073.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 50374..51164 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11073.t1.stop1Ggra11073.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 50374..50376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11073.t1.CDS1Ggra11073.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 50374..50922 -
Ggra11073.t1.CDS2Ggra11073.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000207_pilon 51009..51164 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11073.t1.exon1Ggra11073.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 50374..50922 -
Ggra11073.t1.exon2Ggra11073.t1.exon2Gracilaria gracilis GNS1m maleexontig00000207_pilon 51009..51164 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11073.t1.intron1Ggra11073.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000207_pilon 50923..51008 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11073.t1.start1Ggra11073.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 51162..51164 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11073.t1 ID=Ggra11073.t1|Name=Ggra11073.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=235bp
MNVVHDHPNTAFRCSEDHDAWIELYYSRHSWKVSQISFKKDSDAWVPFGK
FKLIDASDIKTGFKTFRIIGKRLEFKFANNNETEIDNNIGRNYVIESPGR
YVVESGNGCRRVSDAQIADCLRAQRPNDTYIELMFNSNPIWRNCYVTFCM
PGEETLEWHKQQMELMEDTGLWFLRFEAKDGMNCAFTDGNAEWDSNINLN
YQIRLPGRYALGQGNISYLGPSALDMHMQTYIER*
back to top

spliced messenger RNA

>Ggra11073.t1 ID=Ggra11073.t1|Name=Ggra11073.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00000207_pilon:50374..51164- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGTAGTCCACGATCATCCCAACACTGCATTTCGCTGCAGCGAGGA
TCATGATGCTTGGATAGAGCTCTACTATTCAAGACACAGTTGGAAAGTTT
CTCAAATATCTTTCAAGAAAGACTCGGATGCGTGGGTTCCGTTTGGAAAA
TTTAAGCTAATAGATGCCTCAGATATTAAGACTGGATTCAAGACGTTTCG
CATCATAGGAAAGCGACTTGAGTTCAAGTTTGCGAACAACAATGAGACAG
AAATTGACAATAATATCGGTCGGAATTATGTCATTGAGTCTCCCGGTCGA
TATGTTGTTGAAAGCGGTAATGGGTGTCGGCGAGTTTCTGACGCACAAAT
AGCAGACTGTTTACGAGCTCAGAGACCAAACGACACTTACATCGAGCTCA
TGTTCAACTCCAATCCCATATGGCGTAACTGCTATGTTACGTTCTGCATG
CCTGGTGAAGAAACGTTGGAATGGCATAAACAACAGATGGAATTGATGGA
GGACACCGGGCTTTGGTTTCTTCGCTTCGAAGCCAAGGATGGAATGAACT
GCGCCTTCACTGACGGTAACGCAGAGTGGGACAGCAATATCAATCTTAAC
TATCAAATACGATTGCCAGGCAGATATGCCTTAGGGCAAGGGAACATTTC
ATATTTAGGACCGTCTGCTTTAGATATGCACATGCAGACGTACATAGAAA
GATAG
back to top

protein sequence of Ggra11073.t1

>Ggra11073.t1 ID=Ggra11073.t1|Name=Ggra11073.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=235bp
MNVVHDHPNTAFRCSEDHDAWIELYYSRHSWKVSQISFKKDSDAWVPFGK
FKLIDASDIKTGFKTFRIIGKRLEFKFANNNETEIDNNIGRNYVIESPGR
YVVESGNGCRRVSDAQIADCLRAQRPNDTYIELMFNSNPIWRNCYVTFCM
PGEETLEWHKQQMELMEDTGLWFLRFEAKDGMNCAFTDGNAEWDSNINLN
YQIRLPGRYALGQGNISYLGPSALDMHMQTYIER*
back to top

mRNA from alignment at tig00000207_pilon:50374..51164-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11073.t1 ID=Ggra11073.t1|Name=Ggra11073.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=791bp|location=Sequence derived from alignment at tig00000207_pilon:50374..51164- (Gracilaria gracilis GNS1m male)
ATGAATGTAGTCCACGATCATCCCAACACTGCATTTCGCTGCAGCGAGGA
TCATGATGCTTGGATAGAGCTCTACTATTCAAGACACAGTTGGAAAGTTT
CTCAAATATCTTTCAAGAAAGACTCGGATGCGTGGGTTCCGTTTGGAAAA
TTTAAGGTAAGCCTTTGCGTTTCACAAGCCACGGCCACGCATCATTGAGA
AGTACGTGCTCACAGGTAAACGTTGTCCCAAAACCCATGCAGCTAATAGA
TGCCTCAGATATTAAGACTGGATTCAAGACGTTTCGCATCATAGGAAAGC
GACTTGAGTTCAAGTTTGCGAACAACAATGAGACAGAAATTGACAATAAT
ATCGGTCGGAATTATGTCATTGAGTCTCCCGGTCGATATGTTGTTGAAAG
CGGTAATGGGTGTCGGCGAGTTTCTGACGCACAAATAGCAGACTGTTTAC
GAGCTCAGAGACCAAACGACACTTACATCGAGCTCATGTTCAACTCCAAT
CCCATATGGCGTAACTGCTATGTTACGTTCTGCATGCCTGGTGAAGAAAC
GTTGGAATGGCATAAACAACAGATGGAATTGATGGAGGACACCGGGCTTT
GGTTTCTTCGCTTCGAAGCCAAGGATGGAATGAACTGCGCCTTCACTGAC
GGTAACGCAGAGTGGGACAGCAATATCAATCTTAACTATCAAATACGATT
GCCAGGCAGATATGCCTTAGGGCAAGGGAACATTTCATATTTAGGACCGT
CTGCTTTAGATATGCACATGCAGACGTACATAGAAAGATAG
back to top

Coding sequence (CDS) from alignment at tig00000207_pilon:50374..51164-

>Ggra11073.t1 ID=Ggra11073.t1|Name=Ggra11073.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=705bp|location=Sequence derived from alignment at tig00000207_pilon:50374..51164- (Gracilaria gracilis GNS1m male)
ATGAATGTAGTCCACGATCATCCCAACACTGCATTTCGCTGCAGCGAGGA
TCATGATGCTTGGATAGAGCTCTACTATTCAAGACACAGTTGGAAAGTTT
CTCAAATATCTTTCAAGAAAGACTCGGATGCGTGGGTTCCGTTTGGAAAA
TTTAAGCTAATAGATGCCTCAGATATTAAGACTGGATTCAAGACGTTTCG
CATCATAGGAAAGCGACTTGAGTTCAAGTTTGCGAACAACAATGAGACAG
AAATTGACAATAATATCGGTCGGAATTATGTCATTGAGTCTCCCGGTCGA
TATGTTGTTGAAAGCGGTAATGGGTGTCGGCGAGTTTCTGACGCACAAAT
AGCAGACTGTTTACGAGCTCAGAGACCAAACGACACTTACATCGAGCTCA
TGTTCAACTCCAATCCCATATGGCGTAACTGCTATGTTACGTTCTGCATG
CCTGGTGAAGAAACGTTGGAATGGCATAAACAACAGATGGAATTGATGGA
GGACACCGGGCTTTGGTTTCTTCGCTTCGAAGCCAAGGATGGAATGAACT
GCGCCTTCACTGACGGTAACGCAGAGTGGGACAGCAATATCAATCTTAAC
TATCAAATACGATTGCCAGGCAGATATGCCTTAGGGCAAGGGAACATTTC
ATATTTAGGACCGTCTGCTTTAGATATGCACATGCAGACGTACATAGAAA
GATAG
back to top