Ggra11072.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11072.t1
Unique NameGgra11072.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length466
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:48651..50048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_12681T0
PFAMsGTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3
Max annot lvl33154|Opisthokonta
KEGG koko:K03231,ko:K13199
KEGG Pathwayko03013,ko05134,map03013,map05134
Evalue8.73e-252
EggNOG OGsCOG5256@1|root,KOG0052@2759|Eukaryota,38G33@33154|Opisthokonta
Descriptiontranslation elongation factor activity
COG categoryJ
BRITEko00000,ko00001,ko03012,ko03016,ko03019,ko03041,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11072Ggra11072Gracilaria gracilis GNS1m malegenetig00000207_pilon 48651..50048 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11072.t1.start1Ggra11072.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 48651..48653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11072.t1.CDS1Ggra11072.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 48651..50048 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11072.t1.exon1Ggra11072.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 48651..50048 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11072.t1.stop1Ggra11072.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 50046..50048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11072.t1Ggra11072.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 48651..50048 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11072.t1 ID=Ggra11072.t1|Name=Ggra11072.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=466bp
MTEGKKHVSIVICGHVDAGKSTTTGRLIFELGGISDREMQKLKDEAKALG
KDSFAFAFYMDKSKEERARGVTIACTTKEFFTDSYHYTIIDAPGHRDFIK
NMITGASQADVGLLMVPADGNFITSIAKGDHKAGQVQGQTRQHARLLNLL
GVKQLIVGVNKMDCDVAKYGKDRYDEIRAEVTTMLMKVGWKKDFIGKSVP
VIPISGWMGDNLITKSSKMGWWKGCDVLVGKEKVHIDTLSDALEKMVRIP
PRPTNAPLRMPVSGVYKIKGVGDVITGRVEQGVLKPEDQILFLPTHSSST
PCSGKVFSVEMHHKGVKEAGPGDNVGLNIKGLEKLNMPHVGDVMILQKDT
TLKRTGLFTAQVQILDHPGQLKVGYAPVAFVRTGRSACKIKAINWKMGKE
TGGAKVEHPEYIKANEVAEIVFEPQQPFVVEGFKSCEGLGRVAIMEGNTV
VMLGKAIKVEFYQDK*
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spliced messenger RNA

>Ggra11072.t1 ID=Ggra11072.t1|Name=Ggra11072.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1398bp|location=Sequence derived from alignment at tig00000207_pilon:48651..50048+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGAGGGAAAGAAGCACGTCTCCATCGTCATCTGTGGACATGTCGA
TGCCGGTAAATCCACCACCACCGGCCGACTCATCTTCGAGCTTGGCGGCA
TTTCCGATCGTGAAATGCAGAAGCTCAAGGATGAGGCCAAGGCTCTCGGA
AAGGATTCCTTCGCTTTCGCCTTCTACATGGACAAGTCCAAGGAGGAGCG
TGCTCGCGGTGTCACCATCGCCTGTACCACCAAGGAGTTTTTCACAGACT
CCTACCACTACACCATCATCGATGCACCGGGCCATCGTGATTTCATCAAG
AACATGATTACTGGTGCCTCGCAGGCTGATGTTGGTCTCCTCATGGTTCC
CGCCGATGGTAACTTCATTACCTCCATCGCCAAGGGTGACCACAAGGCTG
GTCAAGTGCAGGGTCAGACTCGCCAGCATGCCCGTCTGCTCAACCTTTTG
GGTGTCAAGCAACTTATCGTCGGTGTCAACAAGATGGACTGTGATGTCGC
CAAGTACGGCAAGGATAGATATGATGAGATCCGCGCTGAGGTCACCACCA
TGCTCATGAAGGTCGGATGGAAGAAGGATTTCATTGGCAAGAGTGTGCCG
GTCATTCCGATTTCCGGATGGATGGGTGACAACCTTATCACCAAATCCAG
CAAAATGGGCTGGTGGAAGGGCTGTGACGTGCTTGTCGGAAAGGAGAAGG
TTCACATCGACACTCTTTCCGATGCCCTCGAGAAGATGGTCAGAATCCCT
CCTCGCCCTACTAATGCTCCTCTTCGTATGCCTGTGTCTGGTGTCTACAA
GATCAAGGGTGTTGGTGATGTTATCACTGGCCGTGTGGAACAGGGTGTTC
TGAAGCCTGAGGATCAAATCCTCTTCCTTCCCACCCATTCTTCTTCCACT
CCGTGTTCCGGTAAGGTCTTTTCGGTGGAAATGCATCACAAGGGTGTTAA
GGAGGCAGGGCCTGGCGACAACGTCGGTCTCAATATCAAGGGTCTCGAGA
AGCTGAACATGCCTCACGTTGGTGATGTCATGATTCTGCAAAAGGACACC
ACCTTGAAACGCACTGGCCTGTTTACGGCTCAGGTTCAGATTCTGGATCA
CCCTGGCCAGCTTAAGGTTGGATATGCCCCAGTGGCCTTCGTCCGTACCG
GTAGGTCTGCTTGCAAGATCAAGGCTATTAACTGGAAGATGGGCAAGGAG
ACTGGTGGTGCCAAGGTCGAGCACCCAGAATACATCAAGGCTAATGAGGT
CGCTGAGATTGTGTTTGAGCCGCAACAGCCATTCGTTGTCGAAGGGTTCA
AGTCTTGCGAAGGTCTTGGACGTGTAGCTATCATGGAAGGGAACACTGTT
GTCATGCTCGGAAAAGCCATCAAGGTTGAGTTCTACCAGGACAAATAG
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protein sequence of Ggra11072.t1

>Ggra11072.t1 ID=Ggra11072.t1|Name=Ggra11072.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=466bp
MTEGKKHVSIVICGHVDAGKSTTTGRLIFELGGISDREMQKLKDEAKALG
KDSFAFAFYMDKSKEERARGVTIACTTKEFFTDSYHYTIIDAPGHRDFIK
NMITGASQADVGLLMVPADGNFITSIAKGDHKAGQVQGQTRQHARLLNLL
GVKQLIVGVNKMDCDVAKYGKDRYDEIRAEVTTMLMKVGWKKDFIGKSVP
VIPISGWMGDNLITKSSKMGWWKGCDVLVGKEKVHIDTLSDALEKMVRIP
PRPTNAPLRMPVSGVYKIKGVGDVITGRVEQGVLKPEDQILFLPTHSSST
PCSGKVFSVEMHHKGVKEAGPGDNVGLNIKGLEKLNMPHVGDVMILQKDT
TLKRTGLFTAQVQILDHPGQLKVGYAPVAFVRTGRSACKIKAINWKMGKE
TGGAKVEHPEYIKANEVAEIVFEPQQPFVVEGFKSCEGLGRVAIMEGNTV
VMLGKAIKVEFYQDK*
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mRNA from alignment at tig00000207_pilon:48651..50048+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11072.t1 ID=Ggra11072.t1|Name=Ggra11072.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1398bp|location=Sequence derived from alignment at tig00000207_pilon:48651..50048+ (Gracilaria gracilis GNS1m male)
ATGACTGAGGGAAAGAAGCACGTCTCCATCGTCATCTGTGGACATGTCGA
TGCCGGTAAATCCACCACCACCGGCCGACTCATCTTCGAGCTTGGCGGCA
TTTCCGATCGTGAAATGCAGAAGCTCAAGGATGAGGCCAAGGCTCTCGGA
AAGGATTCCTTCGCTTTCGCCTTCTACATGGACAAGTCCAAGGAGGAGCG
TGCTCGCGGTGTCACCATCGCCTGTACCACCAAGGAGTTTTTCACAGACT
CCTACCACTACACCATCATCGATGCACCGGGCCATCGTGATTTCATCAAG
AACATGATTACTGGTGCCTCGCAGGCTGATGTTGGTCTCCTCATGGTTCC
CGCCGATGGTAACTTCATTACCTCCATCGCCAAGGGTGACCACAAGGCTG
GTCAAGTGCAGGGTCAGACTCGCCAGCATGCCCGTCTGCTCAACCTTTTG
GGTGTCAAGCAACTTATCGTCGGTGTCAACAAGATGGACTGTGATGTCGC
CAAGTACGGCAAGGATAGATATGATGAGATCCGCGCTGAGGTCACCACCA
TGCTCATGAAGGTCGGATGGAAGAAGGATTTCATTGGCAAGAGTGTGCCG
GTCATTCCGATTTCCGGATGGATGGGTGACAACCTTATCACCAAATCCAG
CAAAATGGGCTGGTGGAAGGGCTGTGACGTGCTTGTCGGAAAGGAGAAGG
TTCACATCGACACTCTTTCCGATGCCCTCGAGAAGATGGTCAGAATCCCT
CCTCGCCCTACTAATGCTCCTCTTCGTATGCCTGTGTCTGGTGTCTACAA
GATCAAGGGTGTTGGTGATGTTATCACTGGCCGTGTGGAACAGGGTGTTC
TGAAGCCTGAGGATCAAATCCTCTTCCTTCCCACCCATTCTTCTTCCACT
CCGTGTTCCGGTAAGGTCTTTTCGGTGGAAATGCATCACAAGGGTGTTAA
GGAGGCAGGGCCTGGCGACAACGTCGGTCTCAATATCAAGGGTCTCGAGA
AGCTGAACATGCCTCACGTTGGTGATGTCATGATTCTGCAAAAGGACACC
ACCTTGAAACGCACTGGCCTGTTTACGGCTCAGGTTCAGATTCTGGATCA
CCCTGGCCAGCTTAAGGTTGGATATGCCCCAGTGGCCTTCGTCCGTACCG
GTAGGTCTGCTTGCAAGATCAAGGCTATTAACTGGAAGATGGGCAAGGAG
ACTGGTGGTGCCAAGGTCGAGCACCCAGAATACATCAAGGCTAATGAGGT
CGCTGAGATTGTGTTTGAGCCGCAACAGCCATTCGTTGTCGAAGGGTTCA
AGTCTTGCGAAGGTCTTGGACGTGTAGCTATCATGGAAGGGAACACTGTT
GTCATGCTCGGAAAAGCCATCAAGGTTGAGTTCTACCAGGACAAATAG
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Coding sequence (CDS) from alignment at tig00000207_pilon:48651..50048+

>Ggra11072.t1 ID=Ggra11072.t1|Name=Ggra11072.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1398bp|location=Sequence derived from alignment at tig00000207_pilon:48651..50048+ (Gracilaria gracilis GNS1m male)
ATGACTGAGGGAAAGAAGCACGTCTCCATCGTCATCTGTGGACATGTCGA
TGCCGGTAAATCCACCACCACCGGCCGACTCATCTTCGAGCTTGGCGGCA
TTTCCGATCGTGAAATGCAGAAGCTCAAGGATGAGGCCAAGGCTCTCGGA
AAGGATTCCTTCGCTTTCGCCTTCTACATGGACAAGTCCAAGGAGGAGCG
TGCTCGCGGTGTCACCATCGCCTGTACCACCAAGGAGTTTTTCACAGACT
CCTACCACTACACCATCATCGATGCACCGGGCCATCGTGATTTCATCAAG
AACATGATTACTGGTGCCTCGCAGGCTGATGTTGGTCTCCTCATGGTTCC
CGCCGATGGTAACTTCATTACCTCCATCGCCAAGGGTGACCACAAGGCTG
GTCAAGTGCAGGGTCAGACTCGCCAGCATGCCCGTCTGCTCAACCTTTTG
GGTGTCAAGCAACTTATCGTCGGTGTCAACAAGATGGACTGTGATGTCGC
CAAGTACGGCAAGGATAGATATGATGAGATCCGCGCTGAGGTCACCACCA
TGCTCATGAAGGTCGGATGGAAGAAGGATTTCATTGGCAAGAGTGTGCCG
GTCATTCCGATTTCCGGATGGATGGGTGACAACCTTATCACCAAATCCAG
CAAAATGGGCTGGTGGAAGGGCTGTGACGTGCTTGTCGGAAAGGAGAAGG
TTCACATCGACACTCTTTCCGATGCCCTCGAGAAGATGGTCAGAATCCCT
CCTCGCCCTACTAATGCTCCTCTTCGTATGCCTGTGTCTGGTGTCTACAA
GATCAAGGGTGTTGGTGATGTTATCACTGGCCGTGTGGAACAGGGTGTTC
TGAAGCCTGAGGATCAAATCCTCTTCCTTCCCACCCATTCTTCTTCCACT
CCGTGTTCCGGTAAGGTCTTTTCGGTGGAAATGCATCACAAGGGTGTTAA
GGAGGCAGGGCCTGGCGACAACGTCGGTCTCAATATCAAGGGTCTCGAGA
AGCTGAACATGCCTCACGTTGGTGATGTCATGATTCTGCAAAAGGACACC
ACCTTGAAACGCACTGGCCTGTTTACGGCTCAGGTTCAGATTCTGGATCA
CCCTGGCCAGCTTAAGGTTGGATATGCCCCAGTGGCCTTCGTCCGTACCG
GTAGGTCTGCTTGCAAGATCAAGGCTATTAACTGGAAGATGGGCAAGGAG
ACTGGTGGTGCCAAGGTCGAGCACCCAGAATACATCAAGGCTAATGAGGT
CGCTGAGATTGTGTTTGAGCCGCAACAGCCATTCGTTGTCGAAGGGTTCA
AGTCTTGCGAAGGTCTTGGACGTGTAGCTATCATGGAAGGGAACACTGTT
GTCATGCTCGGAAAAGCCATCAAGGTTGAGTTCTACCAGGACAAATAG
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