Ggra11071.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11071.t1
Unique NameGgra11071.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length154
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:47318..47779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702733.1
Preferred nameRPS11
PFAMsRibosomal_S17,Ribosomal_S17_N
Max annot lvl2759|Eukaryota
KEGG koko:K02949
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue7.58e-74
EggNOG OGsCOG0186@1|root,KOG1728@2759|Eukaryota
DescriptionrRNA binding
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11071Ggra11071Gracilaria gracilis GNS1m malegenetig00000207_pilon 47318..47779 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11071.t1.stop1Ggra11071.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 47318..47320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11071.t1.CDS1Ggra11071.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 47318..47779 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11071.t1.exon1Ggra11071.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 47318..47779 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11071.t1.start1Ggra11071.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 47777..47779 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11071.t1Ggra11071.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 47318..47779 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11071.t1 ID=Ggra11071.t1|Name=Ggra11071.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=154bp
MADILHDKSFPKQGAVSLVGRTSRKQGRWYKNVGLGIKTPREAIEGTYID
KKCPFTGNVSIRGRLFRGVIISTKMKKTVIIRKDYLHWIRKYKRFEKRHR
NIPAHASPCFRLREGDQVTIGQTRPLSKTKRFAVLKINRTAPAEDGKKMF
TGF*
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spliced messenger RNA

>Ggra11071.t1 ID=Ggra11071.t1|Name=Ggra11071.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp|location=Sequence derived from alignment at tig00000207_pilon:47318..47779- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGATATCCTTCACGATAAGAGTTTCCCGAAGCAGGGCGCCGTTTC
GCTGGTCGGCAGAACAAGCCGCAAGCAAGGGCGGTGGTACAAGAACGTCG
GATTGGGCATCAAGACCCCCCGTGAGGCCATCGAAGGAACCTACATCGAC
AAGAAGTGCCCCTTCACTGGCAATGTCTCGATCCGCGGCAGGCTGTTCCG
AGGCGTTATCATCTCTACCAAGATGAAGAAGACCGTCATTATTCGCAAGG
ATTATCTGCATTGGATCCGTAAGTACAAGCGTTTCGAGAAGCGTCACCGA
AATATTCCAGCGCATGCATCGCCTTGTTTCCGTCTGCGTGAGGGAGATCA
GGTCACCATTGGACAGACTCGCCCGCTCTCCAAGACCAAGCGTTTTGCCG
TGCTCAAGATCAATCGCACTGCTCCTGCAGAGGATGGAAAGAAAATGTTC
ACTGGCTTTTAA
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protein sequence of Ggra11071.t1

>Ggra11071.t1 ID=Ggra11071.t1|Name=Ggra11071.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=154bp
MADILHDKSFPKQGAVSLVGRTSRKQGRWYKNVGLGIKTPREAIEGTYID
KKCPFTGNVSIRGRLFRGVIISTKMKKTVIIRKDYLHWIRKYKRFEKRHR
NIPAHASPCFRLREGDQVTIGQTRPLSKTKRFAVLKINRTAPAEDGKKMF
TGF*
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mRNA from alignment at tig00000207_pilon:47318..47779-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11071.t1 ID=Ggra11071.t1|Name=Ggra11071.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp|location=Sequence derived from alignment at tig00000207_pilon:47318..47779- (Gracilaria gracilis GNS1m male)
ATGGCTGATATCCTTCACGATAAGAGTTTCCCGAAGCAGGGCGCCGTTTC
GCTGGTCGGCAGAACAAGCCGCAAGCAAGGGCGGTGGTACAAGAACGTCG
GATTGGGCATCAAGACCCCCCGTGAGGCCATCGAAGGAACCTACATCGAC
AAGAAGTGCCCCTTCACTGGCAATGTCTCGATCCGCGGCAGGCTGTTCCG
AGGCGTTATCATCTCTACCAAGATGAAGAAGACCGTCATTATTCGCAAGG
ATTATCTGCATTGGATCCGTAAGTACAAGCGTTTCGAGAAGCGTCACCGA
AATATTCCAGCGCATGCATCGCCTTGTTTCCGTCTGCGTGAGGGAGATCA
GGTCACCATTGGACAGACTCGCCCGCTCTCCAAGACCAAGCGTTTTGCCG
TGCTCAAGATCAATCGCACTGCTCCTGCAGAGGATGGAAAGAAAATGTTC
ACTGGCTTTTAA
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Coding sequence (CDS) from alignment at tig00000207_pilon:47318..47779-

>Ggra11071.t1 ID=Ggra11071.t1|Name=Ggra11071.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=462bp|location=Sequence derived from alignment at tig00000207_pilon:47318..47779- (Gracilaria gracilis GNS1m male)
ATGGCTGATATCCTTCACGATAAGAGTTTCCCGAAGCAGGGCGCCGTTTC
GCTGGTCGGCAGAACAAGCCGCAAGCAAGGGCGGTGGTACAAGAACGTCG
GATTGGGCATCAAGACCCCCCGTGAGGCCATCGAAGGAACCTACATCGAC
AAGAAGTGCCCCTTCACTGGCAATGTCTCGATCCGCGGCAGGCTGTTCCG
AGGCGTTATCATCTCTACCAAGATGAAGAAGACCGTCATTATTCGCAAGG
ATTATCTGCATTGGATCCGTAAGTACAAGCGTTTCGAGAAGCGTCACCGA
AATATTCCAGCGCATGCATCGCCTTGTTTCCGTCTGCGTGAGGGAGATCA
GGTCACCATTGGACAGACTCGCCCGCTCTCCAAGACCAAGCGTTTTGCCG
TGCTCAAGATCAATCGCACTGCTCCTGCAGAGGATGGAAAGAAAATGTTC
ACTGGCTTTTAA
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