Ggra11068.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11068.t1
Unique NameGgra11068.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length272
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:37280..38095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2711.XP_006486126.1
PFAMsHAGH_C,Lactamase_B
Max annot lvl35493|Streptophyta
KEGG rclassRC00004,RC00137
KEGG koko:K01069
KEGG ReactionR01736
KEGG Pathwayko00620,map00620
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue2.19e-86
EggNOG OGsCOG0491@1|root,KOG0813@2759|Eukaryota,37INA@33090|Viridiplantae,3GDZI@35493|Streptophyta
EC3.1.2.6
DescriptionHydroxyacylglutathione hydrolase
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11068Ggra11068Gracilaria gracilis GNS1m malegenetig00000207_pilon 37280..38095 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11068.t1.stop1Ggra11068.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 37280..37282 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11068.t1.CDS1Ggra11068.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 37280..38095 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11068.t1.exon1Ggra11068.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 37280..38095 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11068.t1.start1Ggra11068.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 38093..38095 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11068.t1Ggra11068.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 37280..38095 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11068.t1 ID=Ggra11068.t1|Name=Ggra11068.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=272bp
MSVSVVPLSSSVDVHVVPILSDNFSYLIHDKSTSTAALVDPAEPRKLLQV
AENLNANVTTSLTTHHHWDHAGGNVQLSRLVPGVEIVGSAYETADGVTKR
LESGRSHQVKDSSLTVSALSTPCHTKGHLCFVTDTTKRAVFTGDTLFIGG
CGKFFEGSASDMQESLNSTLASLHDDTLVFCGHEYTVSNLLFAVSVEPQN
QNTIEKLAWAREQAANGIPTVPSTIGGEKQFNPFMRTNYPELAKTVGVAD
GDPVEVMKALRIRKNSFRPPK*
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spliced messenger RNA

>Ggra11068.t1 ID=Ggra11068.t1|Name=Ggra11068.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00000207_pilon:37280..38095- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGTCTCCGTTGTCCCGCTCAGTTCCTCCGTCGACGTGCACGTCGT
CCCGATTCTGTCCGACAACTTTTCCTACCTCATTCATGACAAATCTACCT
CAACCGCCGCTCTAGTCGACCCTGCAGAGCCTAGAAAGCTCTTGCAAGTC
GCAGAGAATCTCAACGCAAACGTGACGACTTCGCTCACTACCCATCATCA
CTGGGATCATGCCGGGGGAAACGTGCAACTCTCCAGGCTTGTTCCGGGCG
TTGAGATTGTCGGCTCTGCTTATGAAACAGCTGATGGTGTCACAAAGCGG
CTTGAGTCTGGTAGATCTCACCAGGTGAAGGATTCTTCTCTGACCGTTTC
GGCGTTGAGCACCCCATGTCACACGAAGGGACACCTGTGTTTCGTCACCG
ACACCACCAAAAGAGCGGTGTTCACTGGTGATACTCTGTTCATTGGTGGC
TGTGGAAAGTTTTTTGAAGGCTCCGCATCTGACATGCAAGAGTCCTTGAA
TTCCACTCTGGCTTCCCTCCATGACGACACACTTGTGTTTTGTGGCCATG
AGTACACTGTTTCTAATTTGCTATTCGCTGTTTCCGTTGAGCCTCAAAAT
CAGAACACCATAGAGAAGCTTGCTTGGGCTAGAGAGCAAGCTGCTAACGG
AATTCCCACCGTCCCCAGTACTATTGGCGGAGAGAAGCAGTTCAATCCGT
TTATGCGTACAAACTACCCCGAACTGGCTAAGACAGTGGGAGTGGCAGAT
GGAGACCCTGTTGAGGTGATGAAGGCCTTAAGAATAAGGAAAAACTCCTT
TCGACCCCCGAAGTGA
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protein sequence of Ggra11068.t1

>Ggra11068.t1 ID=Ggra11068.t1|Name=Ggra11068.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=272bp
MSVSVVPLSSSVDVHVVPILSDNFSYLIHDKSTSTAALVDPAEPRKLLQV
AENLNANVTTSLTTHHHWDHAGGNVQLSRLVPGVEIVGSAYETADGVTKR
LESGRSHQVKDSSLTVSALSTPCHTKGHLCFVTDTTKRAVFTGDTLFIGG
CGKFFEGSASDMQESLNSTLASLHDDTLVFCGHEYTVSNLLFAVSVEPQN
QNTIEKLAWAREQAANGIPTVPSTIGGEKQFNPFMRTNYPELAKTVGVAD
GDPVEVMKALRIRKNSFRPPK*
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mRNA from alignment at tig00000207_pilon:37280..38095-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11068.t1 ID=Ggra11068.t1|Name=Ggra11068.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00000207_pilon:37280..38095- (Gracilaria gracilis GNS1m male)
ATGAGTGTCTCCGTTGTCCCGCTCAGTTCCTCCGTCGACGTGCACGTCGT
CCCGATTCTGTCCGACAACTTTTCCTACCTCATTCATGACAAATCTACCT
CAACCGCCGCTCTAGTCGACCCTGCAGAGCCTAGAAAGCTCTTGCAAGTC
GCAGAGAATCTCAACGCAAACGTGACGACTTCGCTCACTACCCATCATCA
CTGGGATCATGCCGGGGGAAACGTGCAACTCTCCAGGCTTGTTCCGGGCG
TTGAGATTGTCGGCTCTGCTTATGAAACAGCTGATGGTGTCACAAAGCGG
CTTGAGTCTGGTAGATCTCACCAGGTGAAGGATTCTTCTCTGACCGTTTC
GGCGTTGAGCACCCCATGTCACACGAAGGGACACCTGTGTTTCGTCACCG
ACACCACCAAAAGAGCGGTGTTCACTGGTGATACTCTGTTCATTGGTGGC
TGTGGAAAGTTTTTTGAAGGCTCCGCATCTGACATGCAAGAGTCCTTGAA
TTCCACTCTGGCTTCCCTCCATGACGACACACTTGTGTTTTGTGGCCATG
AGTACACTGTTTCTAATTTGCTATTCGCTGTTTCCGTTGAGCCTCAAAAT
CAGAACACCATAGAGAAGCTTGCTTGGGCTAGAGAGCAAGCTGCTAACGG
AATTCCCACCGTCCCCAGTACTATTGGCGGAGAGAAGCAGTTCAATCCGT
TTATGCGTACAAACTACCCCGAACTGGCTAAGACAGTGGGAGTGGCAGAT
GGAGACCCTGTTGAGGTGATGAAGGCCTTAAGAATAAGGAAAAACTCCTT
TCGACCCCCGAAGTGA
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Coding sequence (CDS) from alignment at tig00000207_pilon:37280..38095-

>Ggra11068.t1 ID=Ggra11068.t1|Name=Ggra11068.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=816bp|location=Sequence derived from alignment at tig00000207_pilon:37280..38095- (Gracilaria gracilis GNS1m male)
ATGAGTGTCTCCGTTGTCCCGCTCAGTTCCTCCGTCGACGTGCACGTCGT
CCCGATTCTGTCCGACAACTTTTCCTACCTCATTCATGACAAATCTACCT
CAACCGCCGCTCTAGTCGACCCTGCAGAGCCTAGAAAGCTCTTGCAAGTC
GCAGAGAATCTCAACGCAAACGTGACGACTTCGCTCACTACCCATCATCA
CTGGGATCATGCCGGGGGAAACGTGCAACTCTCCAGGCTTGTTCCGGGCG
TTGAGATTGTCGGCTCTGCTTATGAAACAGCTGATGGTGTCACAAAGCGG
CTTGAGTCTGGTAGATCTCACCAGGTGAAGGATTCTTCTCTGACCGTTTC
GGCGTTGAGCACCCCATGTCACACGAAGGGACACCTGTGTTTCGTCACCG
ACACCACCAAAAGAGCGGTGTTCACTGGTGATACTCTGTTCATTGGTGGC
TGTGGAAAGTTTTTTGAAGGCTCCGCATCTGACATGCAAGAGTCCTTGAA
TTCCACTCTGGCTTCCCTCCATGACGACACACTTGTGTTTTGTGGCCATG
AGTACACTGTTTCTAATTTGCTATTCGCTGTTTCCGTTGAGCCTCAAAAT
CAGAACACCATAGAGAAGCTTGCTTGGGCTAGAGAGCAAGCTGCTAACGG
AATTCCCACCGTCCCCAGTACTATTGGCGGAGAGAAGCAGTTCAATCCGT
TTATGCGTACAAACTACCCCGAACTGGCTAAGACAGTGGGAGTGGCAGAT
GGAGACCCTGTTGAGGTGATGAAGGCCTTAAGAATAAGGAAAAACTCCTT
TCGACCCCCGAAGTGA
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