Ggra11067.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra11067.t1
Unique Name	Ggra11067.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	562

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000207_pilon	contig	tig00000207_pilon:35254..36939 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra11067	Ggra11067	Gracilaria gracilis GNS1m male	gene	tig00000207_pilon 35254..36939 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11067.t1.start1	Ggra11067.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000207_pilon 35254..35256 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11067.t1.CDS1	Ggra11067.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000207_pilon 35254..36939 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11067.t1.exon1	Ggra11067.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000207_pilon 35254..36939 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11067.t1.stop1	Ggra11067.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000207_pilon 36937..36939 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11067.t1	Ggra11067.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000207_pilon 35254..36939 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000207_pilon:35254..36939+
coding sequence from alignment at tig00000207_pilon:35254..36939+

mRNA sequence

>Ggra11067.t1 ID=Ggra11067.t1|Name=Ggra11067.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=562bp
MRSFLLVLFTLWGSLTVSFAVPTVIRQDANTDTCPIDGVCFALDQSGSIF
TNYPILQAFVAAVAREVESNSPQTLFSAFGFATSFNTIQTSTSEVEGAFV
PAVNAPVTPAGTTNMFAGLNACFNELTDLTGNRVIVLITDGVDNGTPFAI
QLAPTVKEQGIVIITVGIGAGVSSLYLQQVATSPDFFIASAFTALPVEVF
SLTQMMCELPAVSPVPTDDDFSEPEISATPEVTETPEVLGTLGVTETPEV
TETPEVTETPEVSETPEVTETPEVTETPEVTETPEVTETPEVTETPEVTE
SPEVTESPELSETPEVTETPEITETPEVSITPEVSITPEVSITPEVSETP
EVSESPLFASPELTETPEPSETPVVDVPETPTPEIPTPTVSVTPTVSETP
DVPPITPPVVDACEMAFQECGFTFVGTATVPTFALPSTPDVPFTPRIISR
NPNINIGVVNTNDIVPGFIEPDGSVVAITDETDATQPFAPTQFKPFSIPG
DNGSAIGHQTFQANQAFVIADRCVRVFFSSFQLLSTEEPFSVIGNVDATI
DDNACVVFRTA*

spliced messenger RNA

>Ggra11067.t1 ID=Ggra11067.t1|Name=Ggra11067.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1686bp|location=Sequence derived from alignment at tig00000207_pilon:35254..36939+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAAGCTTTCTTCTCGTTCTCTTCACCCTTTGGGGTTCTTTGACAGT
TTCATTCGCCGTGCCTACCGTGATTCGCCAAGATGCAAATACGGATACTT
GTCCAATTGACGGTGTGTGTTTCGCTCTGGATCAGAGCGGGTCAATCTTC
ACCAACTATCCGATTCTCCAAGCCTTCGTAGCCGCCGTTGCTCGTGAAGT
TGAATCTAATTCCCCACAAACTCTATTCTCAGCCTTCGGATTTGCAACCA
GTTTCAATACGATCCAGACGTCTACCTCAGAAGTTGAAGGCGCATTTGTT
CCGGCCGTGAATGCTCCAGTCACACCTGCTGGGACTACGAATATGTTCGC
GGGTCTGAACGCGTGTTTTAATGAATTGACGGATCTTACTGGCAACAGGG
TCATCGTTCTCATTACGGATGGCGTGGACAATGGAACTCCTTTTGCAATT
CAACTAGCTCCGACAGTTAAAGAGCAAGGAATTGTAATCATCACCGTTGG
TATTGGTGCCGGTGTGTCTAGCCTATACCTCCAACAGGTTGCCACGAGTC
CAGACTTTTTCATTGCGTCAGCATTCACTGCATTGCCAGTCGAAGTGTTT
AGCCTTACACAGATGATGTGTGAACTCCCTGCAGTCTCTCCAGTACCAAC
TGATGATGACTTTTCGGAACCAGAGATAAGCGCAACCCCAGAAGTAACGG
AAACACCGGAGGTGCTCGGAACCCTAGGAGTAACAGAAACACCGGAAGTA
ACAGAAACCCCAGAAGTAACAGAAACACCGGAAGTATCAGAAACCCCAGA
AGTGACGGAAACTCCGGAAGTGACGGAAACTCCAGAAGTGACAGAAACTC
CGGAAGTTACAGAAACTCCGGAAGTGACAGAAACTCCGGAAGTTACAGAA
AGTCCAGAAGTAACAGAAAGCCCAGAACTATCCGAGACTCCAGAGGTGAC
CGAAACCCCAGAAATAACCGAAACGCCGGAGGTGAGTATAACTCCAGAAG
TGAGCATAACTCCGGAAGTGAGCATTACCCCAGAAGTGAGCGAAACACCG
GAGGTGAGCGAAAGTCCACTCTTCGCATCTCCAGAGCTAACTGAGACGCC
TGAGCCATCGGAAACACCTGTGGTGGACGTTCCCGAAACGCCTACTCCGG
AAATTCCGACACCAACTGTATCTGTGACACCGACCGTATCTGAGACACCC
GATGTCCCTCCTATCACTCCTCCAGTCGTGGATGCATGTGAAATGGCTTT
CCAGGAGTGTGGCTTCACTTTCGTTGGCACAGCGACAGTGCCGACATTCG
CCCTCCCATCTACTCCTGATGTACCATTCACGCCGAGAATAATATCAAGG
AATCCAAACATTAACATTGGTGTCGTAAACACCAACGACATCGTCCCTGG
GTTTATTGAACCAGACGGAAGTGTCGTTGCCATTACGGACGAGACGGATG
CCACCCAACCGTTTGCACCGACACAGTTCAAGCCGTTTTCTATCCCTGGT
GATAATGGCTCTGCTATTGGCCATCAGACATTCCAAGCCAATCAAGCATT
TGTGATAGCTGATCGATGTGTGCGTGTGTTCTTCTCATCCTTCCAACTGC
TTTCGACTGAGGAACCATTCTCTGTAATCGGCAATGTCGATGCCACTATC
GATGACAATGCGTGTGTTGTCTTCAGAACCGCGTAG

protein sequence of Ggra11067.t1

>Ggra11067.t1 ID=Ggra11067.t1|Name=Ggra11067.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=562bp
MRSFLLVLFTLWGSLTVSFAVPTVIRQDANTDTCPIDGVCFALDQSGSIF
TNYPILQAFVAAVAREVESNSPQTLFSAFGFATSFNTIQTSTSEVEGAFV
PAVNAPVTPAGTTNMFAGLNACFNELTDLTGNRVIVLITDGVDNGTPFAI
QLAPTVKEQGIVIITVGIGAGVSSLYLQQVATSPDFFIASAFTALPVEVF
SLTQMMCELPAVSPVPTDDDFSEPEISATPEVTETPEVLGTLGVTETPEV
TETPEVTETPEVSETPEVTETPEVTETPEVTETPEVTETPEVTETPEVTE
SPEVTESPELSETPEVTETPEITETPEVSITPEVSITPEVSITPEVSETP
EVSESPLFASPELTETPEPSETPVVDVPETPTPEIPTPTVSVTPTVSETP
DVPPITPPVVDACEMAFQECGFTFVGTATVPTFALPSTPDVPFTPRIISR
NPNINIGVVNTNDIVPGFIEPDGSVVAITDETDATQPFAPTQFKPFSIPG
DNGSAIGHQTFQANQAFVIADRCVRVFFSSFQLLSTEEPFSVIGNVDATI
DDNACVVFRTA*

mRNA from alignment at tig00000207_pilon:35254..36939+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra11067.t1 ID=Ggra11067.t1|Name=Ggra11067.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1686bp|location=Sequence derived from alignment at tig00000207_pilon:35254..36939+ (Gracilaria gracilis GNS1m male)
ATGCGAAGCTTTCTTCTCGTTCTCTTCACCCTTTGGGGTTCTTTGACAGT
TTCATTCGCCGTGCCTACCGTGATTCGCCAAGATGCAAATACGGATACTT
GTCCAATTGACGGTGTGTGTTTCGCTCTGGATCAGAGCGGGTCAATCTTC
ACCAACTATCCGATTCTCCAAGCCTTCGTAGCCGCCGTTGCTCGTGAAGT
TGAATCTAATTCCCCACAAACTCTATTCTCAGCCTTCGGATTTGCAACCA
GTTTCAATACGATCCAGACGTCTACCTCAGAAGTTGAAGGCGCATTTGTT
CCGGCCGTGAATGCTCCAGTCACACCTGCTGGGACTACGAATATGTTCGC
GGGTCTGAACGCGTGTTTTAATGAATTGACGGATCTTACTGGCAACAGGG
TCATCGTTCTCATTACGGATGGCGTGGACAATGGAACTCCTTTTGCAATT
CAACTAGCTCCGACAGTTAAAGAGCAAGGAATTGTAATCATCACCGTTGG
TATTGGTGCCGGTGTGTCTAGCCTATACCTCCAACAGGTTGCCACGAGTC
CAGACTTTTTCATTGCGTCAGCATTCACTGCATTGCCAGTCGAAGTGTTT
AGCCTTACACAGATGATGTGTGAACTCCCTGCAGTCTCTCCAGTACCAAC
TGATGATGACTTTTCGGAACCAGAGATAAGCGCAACCCCAGAAGTAACGG
AAACACCGGAGGTGCTCGGAACCCTAGGAGTAACAGAAACACCGGAAGTA
ACAGAAACCCCAGAAGTAACAGAAACACCGGAAGTATCAGAAACCCCAGA
AGTGACGGAAACTCCGGAAGTGACGGAAACTCCAGAAGTGACAGAAACTC
CGGAAGTTACAGAAACTCCGGAAGTGACAGAAACTCCGGAAGTTACAGAA
AGTCCAGAAGTAACAGAAAGCCCAGAACTATCCGAGACTCCAGAGGTGAC
CGAAACCCCAGAAATAACCGAAACGCCGGAGGTGAGTATAACTCCAGAAG
TGAGCATAACTCCGGAAGTGAGCATTACCCCAGAAGTGAGCGAAACACCG
GAGGTGAGCGAAAGTCCACTCTTCGCATCTCCAGAGCTAACTGAGACGCC
TGAGCCATCGGAAACACCTGTGGTGGACGTTCCCGAAACGCCTACTCCGG
AAATTCCGACACCAACTGTATCTGTGACACCGACCGTATCTGAGACACCC
GATGTCCCTCCTATCACTCCTCCAGTCGTGGATGCATGTGAAATGGCTTT
CCAGGAGTGTGGCTTCACTTTCGTTGGCACAGCGACAGTGCCGACATTCG
CCCTCCCATCTACTCCTGATGTACCATTCACGCCGAGAATAATATCAAGG
AATCCAAACATTAACATTGGTGTCGTAAACACCAACGACATCGTCCCTGG
GTTTATTGAACCAGACGGAAGTGTCGTTGCCATTACGGACGAGACGGATG
CCACCCAACCGTTTGCACCGACACAGTTCAAGCCGTTTTCTATCCCTGGT
GATAATGGCTCTGCTATTGGCCATCAGACATTCCAAGCCAATCAAGCATT
TGTGATAGCTGATCGATGTGTGCGTGTGTTCTTCTCATCCTTCCAACTGC
TTTCGACTGAGGAACCATTCTCTGTAATCGGCAATGTCGATGCCACTATC
GATGACAATGCGTGTGTTGTCTTCAGAACCGCGTAG

Coding sequence (CDS) from alignment at tig00000207_pilon:35254..36939+

>Ggra11067.t1 ID=Ggra11067.t1|Name=Ggra11067.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1686bp|location=Sequence derived from alignment at tig00000207_pilon:35254..36939+ (Gracilaria gracilis GNS1m male)
ATGCGAAGCTTTCTTCTCGTTCTCTTCACCCTTTGGGGTTCTTTGACAGT
TTCATTCGCCGTGCCTACCGTGATTCGCCAAGATGCAAATACGGATACTT
GTCCAATTGACGGTGTGTGTTTCGCTCTGGATCAGAGCGGGTCAATCTTC
ACCAACTATCCGATTCTCCAAGCCTTCGTAGCCGCCGTTGCTCGTGAAGT
TGAATCTAATTCCCCACAAACTCTATTCTCAGCCTTCGGATTTGCAACCA
GTTTCAATACGATCCAGACGTCTACCTCAGAAGTTGAAGGCGCATTTGTT
CCGGCCGTGAATGCTCCAGTCACACCTGCTGGGACTACGAATATGTTCGC
GGGTCTGAACGCGTGTTTTAATGAATTGACGGATCTTACTGGCAACAGGG
TCATCGTTCTCATTACGGATGGCGTGGACAATGGAACTCCTTTTGCAATT
CAACTAGCTCCGACAGTTAAAGAGCAAGGAATTGTAATCATCACCGTTGG
TATTGGTGCCGGTGTGTCTAGCCTATACCTCCAACAGGTTGCCACGAGTC
CAGACTTTTTCATTGCGTCAGCATTCACTGCATTGCCAGTCGAAGTGTTT
AGCCTTACACAGATGATGTGTGAACTCCCTGCAGTCTCTCCAGTACCAAC
TGATGATGACTTTTCGGAACCAGAGATAAGCGCAACCCCAGAAGTAACGG
AAACACCGGAGGTGCTCGGAACCCTAGGAGTAACAGAAACACCGGAAGTA
ACAGAAACCCCAGAAGTAACAGAAACACCGGAAGTATCAGAAACCCCAGA
AGTGACGGAAACTCCGGAAGTGACGGAAACTCCAGAAGTGACAGAAACTC
CGGAAGTTACAGAAACTCCGGAAGTGACAGAAACTCCGGAAGTTACAGAA
AGTCCAGAAGTAACAGAAAGCCCAGAACTATCCGAGACTCCAGAGGTGAC
CGAAACCCCAGAAATAACCGAAACGCCGGAGGTGAGTATAACTCCAGAAG
TGAGCATAACTCCGGAAGTGAGCATTACCCCAGAAGTGAGCGAAACACCG
GAGGTGAGCGAAAGTCCACTCTTCGCATCTCCAGAGCTAACTGAGACGCC
TGAGCCATCGGAAACACCTGTGGTGGACGTTCCCGAAACGCCTACTCCGG
AAATTCCGACACCAACTGTATCTGTGACACCGACCGTATCTGAGACACCC
GATGTCCCTCCTATCACTCCTCCAGTCGTGGATGCATGTGAAATGGCTTT
CCAGGAGTGTGGCTTCACTTTCGTTGGCACAGCGACAGTGCCGACATTCG
CCCTCCCATCTACTCCTGATGTACCATTCACGCCGAGAATAATATCAAGG
AATCCAAACATTAACATTGGTGTCGTAAACACCAACGACATCGTCCCTGG
GTTTATTGAACCAGACGGAAGTGTCGTTGCCATTACGGACGAGACGGATG
CCACCCAACCGTTTGCACCGACACAGTTCAAGCCGTTTTCTATCCCTGGT
GATAATGGCTCTGCTATTGGCCATCAGACATTCCAAGCCAATCAAGCATT
TGTGATAGCTGATCGATGTGTGCGTGTGTTCTTCTCATCCTTCCAACTGC
TTTCGACTGAGGAACCATTCTCTGTAATCGGCAATGTCGATGCCACTATC
GATGACAATGCGTGTGTTGTCTTCAGAACCGCGTAG