Ggra11063.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra11063.t1
Unique Name	Ggra11063.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	375

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000207_pilon	contig	tig00000207_pilon:20167..21291 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX48763
PFAMs	S1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02357
Evalue	3.45e-34
EggNOG OGs	COG0264@1\|root,KOG1071@2759\|Eukaryota
Description	translation elongation factor activity
COG category	J
BRITE	ko00000,ko03012,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra11063	Ggra11063	Gracilaria gracilis GNS1m male	gene	tig00000207_pilon 20167..21291 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11063.t1.start1	Ggra11063.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000207_pilon 20167..20169 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11063.t1.CDS1	Ggra11063.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000207_pilon 20167..21291 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11063.t1.exon1	Ggra11063.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000207_pilon 20167..21291 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11063.t1.stop1	Ggra11063.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000207_pilon 21289..21291 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11063.t1	Ggra11063.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000207_pilon 20167..21291 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000207_pilon:20167..21291+
coding sequence from alignment at tig00000207_pilon:20167..21291+

mRNA sequence

>Ggra11063.t1 ID=Ggra11063.t1|Name=Ggra11063.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp
MAPFVPAFVVHLAATPLRISSSSSSFCSRRALPVALRPATRYATLQTIRA
SLGGQPAEAESTLLENEVDVPQAVENPESVDQPEADQPEADQPEADQPEV
DSAEIEAIAAAAEEETDKPRPEQRRRRRRTRQRREVTLPLEQMTVGMELE
GVVKSVTDYGAFIGDTGAPTDGLLHVSQLGNGFVENVSDIVTIGEKITVR
VLNIDMKKGNFSLTTKTAEQLDALKSGESRKEAGSNRKRELNRKWDAFTY
DDKEFIEAKVISLTDFGAFCKLVDESGKAIEAPTDGLIHISELSEKRVSN
VSDVLSEGQVVKVRIVAADRKRNRISLSMRDPRVSPQQQHVATADDIAEA
TKNQPVFKTSFQLAFEKAETGMGQ*

spliced messenger RNA

>Ggra11063.t1 ID=Ggra11063.t1|Name=Ggra11063.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1125bp|location=Sequence derived from alignment at tig00000207_pilon:20167..21291+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGTTCGTCCCCGCCTTCGTCGTCCACCTGGCAGCTACCCCGCT
TCGCATCTCCTCTTCCTCCTCTTCATTCTGTTcgcgccgcgcgctgccag
tcgcgcttcgtcccgccacgcgcTATGCCACACTTCAAACAATAAGAGCC
TCTCTCGGCGGGCAGCCTGCCGAAGCCGAGAGTACCCTGCTTGAGAATGA
AGTCGACGTGCCCCAAGCCGTTGAAAATCCTGAATCTGTCGATCAGCCAG
AGGCCGATCAACCGGAAGCCGATCAGCCGGAGGCCGATCAGCCGGAGGTC
GACTCGGCCGAGATCGAAGCTATTGCCGCAGCCGCCGAGGAGGAAACGGA
CAAACCGCGTCCGGAACAACGTCGTCGTCGTCGCCGCACGCGCCAGAGAC
GAGAAGTTACTTTACCGCTTGAGCAGATGACTGTCGGTATGGAGCTTGAA
GGCGTCGTGAAGAGCGTCACCGACTACGGCGCCTTCATTGGAGACACCGG
TGCTCCTACTGATGGTTTGTTACATGTTTCGCAGCTTGGCAATGGCTTTG
TTGAAAATGTATCCGATATTGTCACCATCGGCGAAAAGATTACCGTCAGG
GTGCTCAATATTGATATGAAGAAGGGTAACTTTTCGCTCACCACCAAGAC
TGCTGAACAGCTTGACGCTCTCAAGAGCGGAGAATCTAGAAAGGAAGCTG
GTTCCAATCGTAAACGCGAACTGAATAGGAAATGGGACGCTTTTACATAT
GATGACAAGGAATTCATCGAGGCTAAGGTTATCTCGCTCACTGACTTCGG
CGCCTTCTGCAAGCTTGTTGACGAGTCTGGAAAAGCAATTGAAGCTCCAA
CAGATGGCTTGATTCATATATCTGAACTCAGTGAGAAAAGAGTTTCCAAT
GTTAGCGACGTTCTGAGTGAGGGGCAGGTTGTGAAGGTTAGAATTGTGGC
AGCTGATCGTAAGAGAAACAGAATTTCTCTGTCCATGAGGGATCCTAGAG
TTTCGCCGCAGCAGCAGCATGTTGCCACTGCCGATGATATCGCAGAGGCT
ACGAAGAATCAACCTGTGTTCAAGACGTCCTTCCAATTGGCATTCGAAAA
GGCTGAGACAGGCATGGGTCAGTAG

protein sequence of Ggra11063.t1

>Ggra11063.t1 ID=Ggra11063.t1|Name=Ggra11063.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=375bp
MAPFVPAFVVHLAATPLRISSSSSSFCSRRALPVALRPATRYATLQTIRA
SLGGQPAEAESTLLENEVDVPQAVENPESVDQPEADQPEADQPEADQPEV
DSAEIEAIAAAAEEETDKPRPEQRRRRRRTRQRREVTLPLEQMTVGMELE
GVVKSVTDYGAFIGDTGAPTDGLLHVSQLGNGFVENVSDIVTIGEKITVR
VLNIDMKKGNFSLTTKTAEQLDALKSGESRKEAGSNRKRELNRKWDAFTY
DDKEFIEAKVISLTDFGAFCKLVDESGKAIEAPTDGLIHISELSEKRVSN
VSDVLSEGQVVKVRIVAADRKRNRISLSMRDPRVSPQQQHVATADDIAEA
TKNQPVFKTSFQLAFEKAETGMGQ*

mRNA from alignment at tig00000207_pilon:20167..21291+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra11063.t1 ID=Ggra11063.t1|Name=Ggra11063.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1125bp|location=Sequence derived from alignment at tig00000207_pilon:20167..21291+ (Gracilaria gracilis GNS1m male)
ATGGCGCCGTTCGTCCCCGCCTTCGTCGTCCACCTGGCAGCTACCCCGCT
TCGCATCTCCTCTTCCTCCTCTTCATTCTGTTcgcgccgcgcgctgccag
tcgcgcttcgtcccgccacgcgcTATGCCACACTTCAAACAATAAGAGCC
TCTCTCGGCGGGCAGCCTGCCGAAGCCGAGAGTACCCTGCTTGAGAATGA
AGTCGACGTGCCCCAAGCCGTTGAAAATCCTGAATCTGTCGATCAGCCAG
AGGCCGATCAACCGGAAGCCGATCAGCCGGAGGCCGATCAGCCGGAGGTC
GACTCGGCCGAGATCGAAGCTATTGCCGCAGCCGCCGAGGAGGAAACGGA
CAAACCGCGTCCGGAACAACGTCGTCGTCGTCGCCGCACGCGCCAGAGAC
GAGAAGTTACTTTACCGCTTGAGCAGATGACTGTCGGTATGGAGCTTGAA
GGCGTCGTGAAGAGCGTCACCGACTACGGCGCCTTCATTGGAGACACCGG
TGCTCCTACTGATGGTTTGTTACATGTTTCGCAGCTTGGCAATGGCTTTG
TTGAAAATGTATCCGATATTGTCACCATCGGCGAAAAGATTACCGTCAGG
GTGCTCAATATTGATATGAAGAAGGGTAACTTTTCGCTCACCACCAAGAC
TGCTGAACAGCTTGACGCTCTCAAGAGCGGAGAATCTAGAAAGGAAGCTG
GTTCCAATCGTAAACGCGAACTGAATAGGAAATGGGACGCTTTTACATAT
GATGACAAGGAATTCATCGAGGCTAAGGTTATCTCGCTCACTGACTTCGG
CGCCTTCTGCAAGCTTGTTGACGAGTCTGGAAAAGCAATTGAAGCTCCAA
CAGATGGCTTGATTCATATATCTGAACTCAGTGAGAAAAGAGTTTCCAAT
GTTAGCGACGTTCTGAGTGAGGGGCAGGTTGTGAAGGTTAGAATTGTGGC
AGCTGATCGTAAGAGAAACAGAATTTCTCTGTCCATGAGGGATCCTAGAG
TTTCGCCGCAGCAGCAGCATGTTGCCACTGCCGATGATATCGCAGAGGCT
ACGAAGAATCAACCTGTGTTCAAGACGTCCTTCCAATTGGCATTCGAAAA
GGCTGAGACAGGCATGGGTCAGTAG

Coding sequence (CDS) from alignment at tig00000207_pilon:20167..21291+

>Ggra11063.t1 ID=Ggra11063.t1|Name=Ggra11063.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1125bp|location=Sequence derived from alignment at tig00000207_pilon:20167..21291+ (Gracilaria gracilis GNS1m male)
ATGGCGCCGTTCGTCCCCGCCTTCGTCGTCCACCTGGCAGCTACCCCGCT
TCGCATCTCCTCTTCCTCCTCTTCATTCTGTTcgcgccgcgcgctgccag
tcgcgcttcgtcccgccacgcgcTATGCCACACTTCAAACAATAAGAGCC
TCTCTCGGCGGGCAGCCTGCCGAAGCCGAGAGTACCCTGCTTGAGAATGA
AGTCGACGTGCCCCAAGCCGTTGAAAATCCTGAATCTGTCGATCAGCCAG
AGGCCGATCAACCGGAAGCCGATCAGCCGGAGGCCGATCAGCCGGAGGTC
GACTCGGCCGAGATCGAAGCTATTGCCGCAGCCGCCGAGGAGGAAACGGA
CAAACCGCGTCCGGAACAACGTCGTCGTCGTCGCCGCACGCGCCAGAGAC
GAGAAGTTACTTTACCGCTTGAGCAGATGACTGTCGGTATGGAGCTTGAA
GGCGTCGTGAAGAGCGTCACCGACTACGGCGCCTTCATTGGAGACACCGG
TGCTCCTACTGATGGTTTGTTACATGTTTCGCAGCTTGGCAATGGCTTTG
TTGAAAATGTATCCGATATTGTCACCATCGGCGAAAAGATTACCGTCAGG
GTGCTCAATATTGATATGAAGAAGGGTAACTTTTCGCTCACCACCAAGAC
TGCTGAACAGCTTGACGCTCTCAAGAGCGGAGAATCTAGAAAGGAAGCTG
GTTCCAATCGTAAACGCGAACTGAATAGGAAATGGGACGCTTTTACATAT
GATGACAAGGAATTCATCGAGGCTAAGGTTATCTCGCTCACTGACTTCGG
CGCCTTCTGCAAGCTTGTTGACGAGTCTGGAAAAGCAATTGAAGCTCCAA
CAGATGGCTTGATTCATATATCTGAACTCAGTGAGAAAAGAGTTTCCAAT
GTTAGCGACGTTCTGAGTGAGGGGCAGGTTGTGAAGGTTAGAATTGTGGC
AGCTGATCGTAAGAGAAACAGAATTTCTCTGTCCATGAGGGATCCTAGAG
TTTCGCCGCAGCAGCAGCATGTTGCCACTGCCGATGATATCGCAGAGGCT
ACGAAGAATCAACCTGTGTTCAAGACGTCCTTCCAATTGGCATTCGAAAA
GGCTGAGACAGGCATGGGTCAGTAG