Ggra11062.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11062.t1
Unique NameGgra11062.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length152
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:18232..18870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11062Ggra11062Gracilaria gracilis GNS1m malegenetig00000207_pilon 18232..18870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11062.t1Ggra11062.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 18232..18870 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11062.t1.stop1Ggra11062.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 18232..18234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11062.t1.CDS1Ggra11062.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 18232..18456 -
Ggra11062.t1.CDS2Ggra11062.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000207_pilon 18534..18630 -
Ggra11062.t1.CDS3Ggra11062.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000207_pilon 18737..18870 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11062.t1.exon1Ggra11062.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 18232..18456 -
Ggra11062.t1.exon2Ggra11062.t1.exon2Gracilaria gracilis GNS1m maleexontig00000207_pilon 18534..18630 -
Ggra11062.t1.exon3Ggra11062.t1.exon3Gracilaria gracilis GNS1m maleexontig00000207_pilon 18737..18870 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11062.t1.intron1Ggra11062.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000207_pilon 18457..18533 -
Ggra11062.t1.intron2Ggra11062.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000207_pilon 18631..18736 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11062.t1.start1Ggra11062.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 18868..18870 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11062.t1 ID=Ggra11062.t1|Name=Ggra11062.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=152bp
MAHTTSNQRIAISSLLNDPIRDYICPPQPSSSQNRLYECEQCLKRFTQKA
DVRKHKKTVHEKARDYHCNECTLSFGERGNLNKHVRSIHRKERNFVCNQC
PASFPFRNGLTEHQRMKHSDDRPYECKTCTSSFKKKSHLHRHVTVVHKAT
L*
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spliced messenger RNA

>Ggra11062.t1 ID=Ggra11062.t1|Name=Ggra11062.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=456bp|location=Sequence derived from alignment at tig00000207_pilon:18232..18870- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCACACCACCTCCAATCAACGAATTGCTATCTCTTCGCTTCTTAA
CGATCCTATTCGAGATTACATCTGCCCGCCACAACCATCCTCATCACAGA
ATAGGCTTTATGAATGCGAACAGTGTCTCAAGAGGTTCACTCAGAAGGCT
GATGTCAGAAAGCATAAGAAGACCGTTCATGAGAAGGCAAGAGATTATCA
CTGCAATGAATGTACCTTATCCTTCGGAGAGCGTGGAAATCTTAACAAGC
ATGTACGAAGCATTCACAGAAAAGAGCGCAACTTTGTTTGCAACCAATGT
CCAGCTTCATTCCCGTTTCGAAATGGACTCACCGAGCATCAACGGATGAA
GCATTCTGATGATCGGCCCTACGAATGCAAAACATGTACTTCAAGCTTCA
AAAAGAAGAGTCACTTGCACAGACACGTTACTGTTGTTCACAAGGCTACT
CTTTGA
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protein sequence of Ggra11062.t1

>Ggra11062.t1 ID=Ggra11062.t1|Name=Ggra11062.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=152bp
MAHTTSNQRIAISSLLNDPIRDYICPPQPSSSQNRLYECEQCLKRFTQKA
DVRKHKKTVHEKARDYHCNECTLSFGERGNLNKHVRSIHRKERNFVCNQC
PASFPFRNGLTEHQRMKHSDDRPYECKTCTSSFKKKSHLHRHVTVVHKAT
L*
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mRNA from alignment at tig00000207_pilon:18232..18870-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11062.t1 ID=Ggra11062.t1|Name=Ggra11062.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000207_pilon:18232..18870- (Gracilaria gracilis GNS1m male)
ATGGCTCACACCACCTCCAATCAACGAATTGCTATCTCTTCGCTTCTTAA
CGATCCTATTCGAGATTACATCTGCCCGCCACAACCATCCTCATCACAGA
ATAGGCTTTATGAATGCGAACAGTGTCTCAAGAGGTAACTTCAGCTCATT
TCTACTCCACTCCCTCTTTCTCCTTATCGTTCATGCTTTCTAATTCCATT
TGTTCTCCATTTTTTCGTGCTTGTTTCTTGTTATGTTCAGGTTCACTCAG
AAGGCTGATGTCAGAAAGCATAAGAAGACCGTTCATGAGAAGGCAAGAGA
TTATCACTGCAATGAATGTACCTTATCCTTCGGAGAGGTAAGCTTTCTTC
CCATGTATTTCTTTGCAGCAGCATAAATGAAAAGCCTCAATCTAACCTTT
ATCTTTGCTTTCAGCGTGGAAATCTTAACAAGCATGTACGAAGCATTCAC
AGAAAAGAGCGCAACTTTGTTTGCAACCAATGTCCAGCTTCATTCCCGTT
TCGAAATGGACTCACCGAGCATCAACGGATGAAGCATTCTGATGATCGGC
CCTACGAATGCAAAACATGTACTTCAAGCTTCAAAAAGAAGAGTCACTTG
CACAGACACGTTACTGTTGTTCACAAGGCTACTCTTTGA
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Coding sequence (CDS) from alignment at tig00000207_pilon:18232..18870-

>Ggra11062.t1 ID=Ggra11062.t1|Name=Ggra11062.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=456bp|location=Sequence derived from alignment at tig00000207_pilon:18232..18870- (Gracilaria gracilis GNS1m male)
ATGGCTCACACCACCTCCAATCAACGAATTGCTATCTCTTCGCTTCTTAA
CGATCCTATTCGAGATTACATCTGCCCGCCACAACCATCCTCATCACAGA
ATAGGCTTTATGAATGCGAACAGTGTCTCAAGAGGTTCACTCAGAAGGCT
GATGTCAGAAAGCATAAGAAGACCGTTCATGAGAAGGCAAGAGATTATCA
CTGCAATGAATGTACCTTATCCTTCGGAGAGCGTGGAAATCTTAACAAGC
ATGTACGAAGCATTCACAGAAAAGAGCGCAACTTTGTTTGCAACCAATGT
CCAGCTTCATTCCCGTTTCGAAATGGACTCACCGAGCATCAACGGATGAA
GCATTCTGATGATCGGCCCTACGAATGCAAAACATGTACTTCAAGCTTCA
AAAAGAAGAGTCACTTGCACAGACACGTTACTGTTGTTCACAAGGCTACT
CTTTGA
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