Ggra11056.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11056.t1
Unique NameGgra11056.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:3491..5135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704806.1
PFAMsPro_isomerase
Max annot lvl2759|Eukaryota
Evalue3.73e-85
EggNOG OGsCOG0652@1|root,2QSSP@2759|Eukaryota
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11056Ggra11056Gracilaria gracilis GNS1m malegenetig00000207_pilon 3491..5135 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11056.t1Ggra11056.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 3491..5135 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11056.t1.stop1Ggra11056.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 3491..3493 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11056.t1.CDS1Ggra11056.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 3491..4148 -
Ggra11056.t1.CDS2Ggra11056.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000207_pilon 4248..4359 -
Ggra11056.t1.CDS3Ggra11056.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000207_pilon 4466..5135 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11056.t1.exon1Ggra11056.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 3491..4148 -
Ggra11056.t1.exon2Ggra11056.t1.exon2Gracilaria gracilis GNS1m maleexontig00000207_pilon 4248..4359 -
Ggra11056.t1.exon3Ggra11056.t1.exon3Gracilaria gracilis GNS1m maleexontig00000207_pilon 4466..5135 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11056.t1.intron1Ggra11056.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000207_pilon 4149..4247 -
Ggra11056.t1.intron2Ggra11056.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000207_pilon 4360..4465 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11056.t1.start1Ggra11056.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 5133..5135 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11056.t1 ID=Ggra11056.t1|Name=Ggra11056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=480bp
MTEQKVLQLPAVAFLYRSSIPLVERPRSATFSKYCCCSSRSPSYRNAIAA
ATAAAAAAAVLLLPLSDAQAKGLLSNNTIFRRYLITDSDAILRYSLPIPS
ERLSAEPIPIRRIQEQLERLGVDLRSRGAAGLISGKRDVQKLRDLLTTTR
LDVLLDVPADKRRIAAQSLSALEVCVSEIGGELQVSSAPGSTSLFPPQIS
RVQETLSDVFERRNAMSKKTNFDAALVEEYRQRALDHVANIEQIAVEGIG
LPFKIPRRYNEFPRLVGRAMVQLKLRKGGDAAWKDPNTLQPLGKDLTITA
VLDGFSAPLTCGNFVDIARRGYYDNTTILAAQKGFFAQMGEREDDNIEGF
KDPKSGKRRQIPLEILVDGEPSPVYGATLDELGIGDLQPVLPVSAFGAMA
MVHSVEDANDASSQFYFFILDPASYQARSFGGSVLTGSLSTFGYVDDGKE
FLPQLQVGDKITSVKMISGIDNFVEKGDS*
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spliced messenger RNA

>Ggra11056.t1 ID=Ggra11056.t1|Name=Ggra11056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00000207_pilon:3491..5135- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGAACAGAAAGTGCTTCAGTTACCAGCTGTTGCCTTTCTTTATCG
CTCTTCGATTCCTTTGGTCGAACGACCCCGCTCCGCGACTTTTTCGAAAT
ACTGTTGCTGCTCTTCGAGGTCTCCATCGTATCGCAATGCCATTGCGGCG
GCCACTGCAGCTGCGGCAGCGGCAGCTGTGCTATTGCTACCACTATCTGA
TGCGCAAGCAAAAGGCTTGCTGTCGAACAACACGATATTCCGTCGCTATC
TAATAACAGATTCAGATGCTATTCTTCGTTACTCACTTCCCATACCTAGC
GAACGGCTATCAGCAGAGCCAATTCCAATCCGCCGAATTCAAGAACAGTT
GGAGCGCTTAGGAGTTGATCTTCGTTCACGTGGAGCGGCGGGACTCATCT
CCGGAAAGAGGGACGTTCAGAAGCTCAGAGATTTGTTAACTACAACCAGA
TTGGATGTCTTATTGGACGTTCCGGCTGACAAACGAAGAATAGCCGCTCA
ATCTCTCTCAGCGTTAGAGGTTTGTGTTTCCGAAATTGGAGGAGAACTGC
AAGTTTCTTCTGCGCCCGGAAGCACTAGCTTGTTTCCTCCGCAGATTTCT
AGAGTTCAAGAAACACTATCCGATGTCTTCGAAAGACGAAATGCAATGTC
TAAGAAAACGAATTTCGATGCTGCTTTGGTGGAGGAATATAGACAGCGTG
CTTTGGACCATGTAGCTAACATTGAGCAAATTGCTGTTGAAGGCATTGGT
TTGCCTTTCAAGATTCCACGGCGCTACAACGAGTTTCCACGCCTTGTTGG
AAGAGCCATGGTGCAGCTCAAACTAAGAAAAGGAGGCGATGCAGCTTGGA
AGGACCCAAACACTCTACAGCCGCTTGGAAAAGATCTAACAATCACAGCT
GTGCTGGACGGGTTTTCAGCTCCTCTAACATGCGGTAATTTTGTGGACAT
TGCACGCCGTGGGTACTATGATAACACGACAATTCTGGCGGCACAAAAGG
GCTTTTTCGCCCAAATGGGAGAAAGAGAGGATGACAACATTGAGGGTTTC
AAAGACCCTAAATCTGGAAAAAGAAGACAAATCCCTCTAGAGATCTTGGT
GGATGGCGAACCATCTCCTGTGTATGGCGCAACGTTGGACGAACTTGGAA
TCGGTGATTTACAACCTGTTCTACCTGTGTCTGCGTTCGGTGCTATGGCG
ATGGTGCACAGTGTGGAAGATGCGAATGATGCTTCTTCGCAGTTCTACTT
TTTCATACTTGATCCAGCGTCGTATCAGGCCAGATCTTTCGGCGGCAGCG
TGTTGACCGGGAGCCTATCGACTTTTGGGTATGTGGATGATGGCAAAGAA
TTTCTGCCACAGTTGCAAGTTGGGGATAAGATAACATCGGTGAAGATGAT
TTCTGGGATTGACAACTTTGTAGAAAAAGGTGATAGCTAA
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protein sequence of Ggra11056.t1

>Ggra11056.t1 ID=Ggra11056.t1|Name=Ggra11056.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=480bp
MTEQKVLQLPAVAFLYRSSIPLVERPRSATFSKYCCCSSRSPSYRNAIAA
ATAAAAAAAVLLLPLSDAQAKGLLSNNTIFRRYLITDSDAILRYSLPIPS
ERLSAEPIPIRRIQEQLERLGVDLRSRGAAGLISGKRDVQKLRDLLTTTR
LDVLLDVPADKRRIAAQSLSALEVCVSEIGGELQVSSAPGSTSLFPPQIS
RVQETLSDVFERRNAMSKKTNFDAALVEEYRQRALDHVANIEQIAVEGIG
LPFKIPRRYNEFPRLVGRAMVQLKLRKGGDAAWKDPNTLQPLGKDLTITA
VLDGFSAPLTCGNFVDIARRGYYDNTTILAAQKGFFAQMGEREDDNIEGF
KDPKSGKRRQIPLEILVDGEPSPVYGATLDELGIGDLQPVLPVSAFGAMA
MVHSVEDANDASSQFYFFILDPASYQARSFGGSVLTGSLSTFGYVDDGKE
FLPQLQVGDKITSVKMISGIDNFVEKGDS*
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mRNA from alignment at tig00000207_pilon:3491..5135-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11056.t1 ID=Ggra11056.t1|Name=Ggra11056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1645bp|location=Sequence derived from alignment at tig00000207_pilon:3491..5135- (Gracilaria gracilis GNS1m male)
ATGACCGAACAGAAAGTGCTTCAGTTACCAGCTGTTGCCTTTCTTTATCG
CTCTTCGATTCCTTTGGTCGAACGACCCCGCTCCGCGACTTTTTCGAAAT
ACTGTTGCTGCTCTTCGAGGTCTCCATCGTATCGCAATGCCATTGCGGCG
GCCACTGCAGCTGCGGCAGCGGCAGCTGTGCTATTGCTACCACTATCTGA
TGCGCAAGCAAAAGGCTTGCTGTCGAACAACACGATATTCCGTCGCTATC
TAATAACAGATTCAGATGCTATTCTTCGTTACTCACTTCCCATACCTAGC
GAACGGCTATCAGCAGAGCCAATTCCAATCCGCCGAATTCAAGAACAGTT
GGAGCGCTTAGGAGTTGATCTTCGTTCACGTGGAGCGGCGGGACTCATCT
CCGGAAAGAGGGACGTTCAGAAGCTCAGAGATTTGTTAACTACAACCAGA
TTGGATGTCTTATTGGACGTTCCGGCTGACAAACGAAGAATAGCCGCTCA
ATCTCTCTCAGCGTTAGAGGTTTGTGTTTCCGAAATTGGAGGAGAACTGC
AAGTTTCTTCTGCGCCCGGAAGCACTAGCTTGTTTCCTCCGCAGATTTCT
AGAGTTCAAGAAACACTATCCGATGTCTTCGAAAGACGAAATGCAATGTC
TAAGAAAACGAATTTCGATGGTATGTTGAACTCTTTTGCGTTGCTCGGCC
ACACTTTCATAGCTTGCTAACTCTCTGCCACATGCATTGTTACTACGGGT
GTTTTTTTGTTGTTTATCCGTTGAAGCTGCTTTGGTGGAGGAATATAGAC
AGCGTGCTTTGGACCATGTAGCTAACATTGAGCAAATTGCTGTTGAAGGC
ATTGGTTTGCCTTTCAAGATTCCACGGCGCTACAACGAGTAAGTGCGCAC
CTTCGTAACGCTCCCCGCCAACGAAACAAATGTTGGCTGCTTTGATGCTA
ACGATGACACGAATTTTTCCCAATGTCGCCGGTGCAGGTTTCCACGCCTT
GTTGGAAGAGCCATGGTGCAGCTCAAACTAAGAAAAGGAGGCGATGCAGC
TTGGAAGGACCCAAACACTCTACAGCCGCTTGGAAAAGATCTAACAATCA
CAGCTGTGCTGGACGGGTTTTCAGCTCCTCTAACATGCGGTAATTTTGTG
GACATTGCACGCCGTGGGTACTATGATAACACGACAATTCTGGCGGCACA
AAAGGGCTTTTTCGCCCAAATGGGAGAAAGAGAGGATGACAACATTGAGG
GTTTCAAAGACCCTAAATCTGGAAAAAGAAGACAAATCCCTCTAGAGATC
TTGGTGGATGGCGAACCATCTCCTGTGTATGGCGCAACGTTGGACGAACT
TGGAATCGGTGATTTACAACCTGTTCTACCTGTGTCTGCGTTCGGTGCTA
TGGCGATGGTGCACAGTGTGGAAGATGCGAATGATGCTTCTTCGCAGTTC
TACTTTTTCATACTTGATCCAGCGTCGTATCAGGCCAGATCTTTCGGCGG
CAGCGTGTTGACCGGGAGCCTATCGACTTTTGGGTATGTGGATGATGGCA
AAGAATTTCTGCCACAGTTGCAAGTTGGGGATAAGATAACATCGGTGAAG
ATGATTTCTGGGATTGACAACTTTGTAGAAAAAGGTGATAGCTAA
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Coding sequence (CDS) from alignment at tig00000207_pilon:3491..5135-

>Ggra11056.t1 ID=Ggra11056.t1|Name=Ggra11056.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1440bp|location=Sequence derived from alignment at tig00000207_pilon:3491..5135- (Gracilaria gracilis GNS1m male)
ATGACCGAACAGAAAGTGCTTCAGTTACCAGCTGTTGCCTTTCTTTATCG
CTCTTCGATTCCTTTGGTCGAACGACCCCGCTCCGCGACTTTTTCGAAAT
ACTGTTGCTGCTCTTCGAGGTCTCCATCGTATCGCAATGCCATTGCGGCG
GCCACTGCAGCTGCGGCAGCGGCAGCTGTGCTATTGCTACCACTATCTGA
TGCGCAAGCAAAAGGCTTGCTGTCGAACAACACGATATTCCGTCGCTATC
TAATAACAGATTCAGATGCTATTCTTCGTTACTCACTTCCCATACCTAGC
GAACGGCTATCAGCAGAGCCAATTCCAATCCGCCGAATTCAAGAACAGTT
GGAGCGCTTAGGAGTTGATCTTCGTTCACGTGGAGCGGCGGGACTCATCT
CCGGAAAGAGGGACGTTCAGAAGCTCAGAGATTTGTTAACTACAACCAGA
TTGGATGTCTTATTGGACGTTCCGGCTGACAAACGAAGAATAGCCGCTCA
ATCTCTCTCAGCGTTAGAGGTTTGTGTTTCCGAAATTGGAGGAGAACTGC
AAGTTTCTTCTGCGCCCGGAAGCACTAGCTTGTTTCCTCCGCAGATTTCT
AGAGTTCAAGAAACACTATCCGATGTCTTCGAAAGACGAAATGCAATGTC
TAAGAAAACGAATTTCGATGCTGCTTTGGTGGAGGAATATAGACAGCGTG
CTTTGGACCATGTAGCTAACATTGAGCAAATTGCTGTTGAAGGCATTGGT
TTGCCTTTCAAGATTCCACGGCGCTACAACGAGTTTCCACGCCTTGTTGG
AAGAGCCATGGTGCAGCTCAAACTAAGAAAAGGAGGCGATGCAGCTTGGA
AGGACCCAAACACTCTACAGCCGCTTGGAAAAGATCTAACAATCACAGCT
GTGCTGGACGGGTTTTCAGCTCCTCTAACATGCGGTAATTTTGTGGACAT
TGCACGCCGTGGGTACTATGATAACACGACAATTCTGGCGGCACAAAAGG
GCTTTTTCGCCCAAATGGGAGAAAGAGAGGATGACAACATTGAGGGTTTC
AAAGACCCTAAATCTGGAAAAAGAAGACAAATCCCTCTAGAGATCTTGGT
GGATGGCGAACCATCTCCTGTGTATGGCGCAACGTTGGACGAACTTGGAA
TCGGTGATTTACAACCTGTTCTACCTGTGTCTGCGTTCGGTGCTATGGCG
ATGGTGCACAGTGTGGAAGATGCGAATGATGCTTCTTCGCAGTTCTACTT
TTTCATACTTGATCCAGCGTCGTATCAGGCCAGATCTTTCGGCGGCAGCG
TGTTGACCGGGAGCCTATCGACTTTTGGGTATGTGGATGATGGCAAAGAA
TTTCTGCCACAGTTGCAAGTTGGGGATAAGATAACATCGGTGAAGATGAT
TTCTGGGATTGACAACTTTGTAGAAAAAGGTGATAGCTAA
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