Ggra1103.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1103.t1
Unique NameGgra1103.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length108
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000945_piloncontigtig00000945_pilon:52049..52372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707867.1
Max annot lvl2759|Eukaryota
Evalue4.5e-21
EggNOG OGs2E51Z@1|root,2SBWK@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1103Ggra1103Gracilaria gracilis GNS1m malegenetig00000945_pilon 52049..52372 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1103.t1.start1Ggra1103.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000945_pilon 52049..52051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1103.t1.CDS1Ggra1103.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000945_pilon 52049..52372 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1103.t1.exon1Ggra1103.t1.exon1Gracilaria gracilis GNS1m maleexontig00000945_pilon 52049..52372 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1103.t1.stop1Ggra1103.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000945_pilon 52370..52372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1103.t1Ggra1103.t1Gracilaria gracilis GNS1m malepolypeptidetig00000945_pilon 52049..52372 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1103.t1 ID=Ggra1103.t1|Name=Ggra1103.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=108bp
MGLGEDGLKEDLSFAQNCIEEGCSVDAVQDVLTRLERRRAVLALEVTQIE
DVMAVLAKENLGGDRNLVAEAMAAAVSIFSKADDDYPGVGQATNPWTLDP
LKKQPKL*
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spliced messenger RNA

>Ggra1103.t1 ID=Ggra1103.t1|Name=Ggra1103.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=324bp|location=Sequence derived from alignment at tig00000945_pilon:52049..52372+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTTGGGAGAGGACGGGCTCAAGGAGGACCTGTCCTTCGCGCAGAA
CTGCATAGAGGAAGGCTGCTCAGTGGACGCCGTGCAGGACGTGCTCACGC
GCCTGGAGCGCCGTCGCGCCGTGCTGGCGTTGGAGGTCACGCAGATCGAG
GACGTCATGGCCGTGCTCGCCAAGGAGAACCTGGGAGGCGACCGTAACCT
CGTGGCGGAGGCCATGGCCGCCGCCGTCAGCATCTTCTCCAAGGCGGATG
ATGACTACCCGGGCGTGGGACAGGCCACCAATCCATGGACCTTGGACCCG
CTCAAGAAGCAACCCAAGCTGTAG
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protein sequence of Ggra1103.t1

>Ggra1103.t1 ID=Ggra1103.t1|Name=Ggra1103.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=108bp
MGLGEDGLKEDLSFAQNCIEEGCSVDAVQDVLTRLERRRAVLALEVTQIE
DVMAVLAKENLGGDRNLVAEAMAAAVSIFSKADDDYPGVGQATNPWTLDP
LKKQPKL*
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mRNA from alignment at tig00000945_pilon:52049..52372+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1103.t1 ID=Ggra1103.t1|Name=Ggra1103.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=324bp|location=Sequence derived from alignment at tig00000945_pilon:52049..52372+ (Gracilaria gracilis GNS1m male)
ATGGGCTTGGGAGAGGACGGGCTCAAGGAGGACCTGTCCTTCGCGCAGAA
CTGCATAGAGGAAGGCTGCTCAGTGGACGCCGTGCAGGACGTGCTCACGC
GCCTGGAGCGCCGTCGCGCCGTGCTGGCGTTGGAGGTCACGCAGATCGAG
GACGTCATGGCCGTGCTCGCCAAGGAGAACCTGGGAGGCGACCGTAACCT
CGTGGCGGAGGCCATGGCCGCCGCCGTCAGCATCTTCTCCAAGGCGGATG
ATGACTACCCGGGCGTGGGACAGGCCACCAATCCATGGACCTTGGACCCG
CTCAAGAAGCAACCCAAGCTGTAG
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Coding sequence (CDS) from alignment at tig00000945_pilon:52049..52372+

>Ggra1103.t1 ID=Ggra1103.t1|Name=Ggra1103.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=324bp|location=Sequence derived from alignment at tig00000945_pilon:52049..52372+ (Gracilaria gracilis GNS1m male)
ATGGGCTTGGGAGAGGACGGGCTCAAGGAGGACCTGTCCTTCGCGCAGAA
CTGCATAGAGGAAGGCTGCTCAGTGGACGCCGTGCAGGACGTGCTCACGC
GCCTGGAGCGCCGTCGCGCCGTGCTGGCGTTGGAGGTCACGCAGATCGAG
GACGTCATGGCCGTGCTCGCCAAGGAGAACCTGGGAGGCGACCGTAACCT
CGTGGCGGAGGCCATGGCCGCCGCCGTCAGCATCTTCTCCAAGGCGGATG
ATGACTACCCGGGCGTGGGACAGGCCACCAATCCATGGACCTTGGACCCG
CTCAAGAAGCAACCCAAGCTGTAG
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